HEADER IMMUNE SYSTEM 27-JUN-15 5C9J TITLE HUMAN CD1C WITH LIGANDS IN A' AND F' CHANNEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD1C,T-CELL SURFACE COMPND 3 GLYCOPROTEIN CD1B; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD1C, CD1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23D; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET23D KEYWDS ANTIGEN PRESENTATION, CD1, HUMAN CD1, MHC-LIKE, IMMUNOLOGY, LIPID KEYWDS 2 ANTIGEN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR I.TEWS,M.M.MACHELETT,S.MANSOUR,S.D.GADOLA REVDAT 3 10-JAN-24 5C9J 1 REMARK REVDAT 2 09-MAR-16 5C9J 1 JRNL REVDAT 1 02-MAR-16 5C9J 0 JRNL AUTH S.MANSOUR,A.S.TOCHEVA,C.CAVE-AYLAND,M.M.MACHELETT,B.SANDER, JRNL AUTH 2 N.M.LISSIN,P.E.MOLLOY,M.S.BAIRD,G.STUBS,N.W.SCHRODER, JRNL AUTH 3 R.R.SCHUMANN,J.RADEMANN,A.D.POSTLE,B.K.JAKOBSEN, JRNL AUTH 4 B.G.MARSHALL,R.GOSAIN,P.T.ELKINGTON,T.ELLIOTT,C.K.SKYLARIS, JRNL AUTH 5 J.W.ESSEX,I.TEWS,S.D.GADOLA JRNL TITL CHOLESTERYL ESTERS STABILIZE HUMAN CD1C CONFORMATIONS FOR JRNL TITL 2 RECOGNITION BY SELF-REACTIVE T CELLS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E1266 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 26884207 JRNL DOI 10.1073/PNAS.1519246113 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 22416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1369 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3052 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.85000 REMARK 3 B22 (A**2) : -8.85000 REMARK 3 B33 (A**2) : 17.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.048 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.040 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.852 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3246 ; 0.028 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2976 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4394 ; 2.372 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6869 ; 1.188 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 384 ; 8.214 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;34.591 ;24.025 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 503 ;15.619 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.338 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 448 ; 0.147 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3654 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 801 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1524 ; 4.608 ; 5.119 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1523 ; 4.603 ; 5.118 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1903 ; 6.138 ; 7.657 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1904 ; 6.136 ; 7.658 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1719 ; 5.752 ; 5.580 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1711 ; 5.700 ; 5.575 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2476 ; 7.931 ; 8.151 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3523 ; 9.664 ;41.084 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3505 ; 9.660 ;40.981 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.839 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.161 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8960 29.5990 0.4630 REMARK 3 T TENSOR REMARK 3 T11: 0.0077 T22: 0.0086 REMARK 3 T33: 0.0038 T12: 0.0022 REMARK 3 T13: 0.0037 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.9753 L22: 1.4656 REMARK 3 L33: 2.1713 L12: -0.1581 REMARK 3 L13: 1.2913 L23: -0.3572 REMARK 3 S TENSOR REMARK 3 S11: 0.0195 S12: 0.0068 S13: 0.0116 REMARK 3 S21: 0.0310 S22: -0.0464 S23: -0.0254 REMARK 3 S31: 0.0404 S32: 0.0162 S33: 0.0268 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 185 A 285 REMARK 3 ORIGIN FOR THE GROUP (A): -38.8320 10.8050 6.2130 REMARK 3 T TENSOR REMARK 3 T11: 0.0581 T22: 0.0793 REMARK 3 T33: 0.0980 T12: -0.0219 REMARK 3 T13: -0.0604 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 3.0729 L22: 1.4151 REMARK 3 L33: 1.4259 L12: 1.6900 REMARK 3 L13: -2.0000 L23: -0.9066 REMARK 3 S TENSOR REMARK 3 S11: 0.1111 S12: -0.1855 S13: 0.0659 REMARK 3 S21: 0.0428 S22: -0.0794 S23: 0.0621 REMARK 3 S31: -0.0475 S32: 0.0746 S33: -0.0317 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): -17.5230 4.2720 2.9860 REMARK 3 T TENSOR REMARK 3 T11: 0.0425 T22: 0.0243 REMARK 3 T33: 0.1037 T12: 0.0038 REMARK 3 T13: -0.0367 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 2.6578 L22: 1.4471 REMARK 3 L33: 1.8345 L12: 1.1131 REMARK 3 L13: 0.9960 L23: 0.4000 REMARK 3 S TENSOR REMARK 3 S11: 0.1014 S12: 0.0432 S13: -0.3914 REMARK 3 S21: 0.0371 S22: 0.0874 S23: -0.1111 REMARK 3 S31: 0.2568 S32: -0.0323 S33: -0.1888 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5C9J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210665. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 03.11.14 REMARK 200 DATA SCALING SOFTWARE : XSCALE 03.11.14 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46442 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 28.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.040 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.780 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.8.4 REMARK 200 STARTING MODEL: 3OV6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE, 0.1M TRIS PH REMARK 280 8, 10% PEG 8000, 1:1 PROTEIN TO PRECIPITANT RATIO., PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.36000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.72000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.72000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.36000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 414 O HOH A 453 0.86 REMARK 500 O HOH A 403 O HOH A 413 1.46 REMARK 500 O HOH A 470 O HOH A 477 1.64 REMARK 500 O HOH B 218 O HOH B 229 1.73 REMARK 500 OE1 GLN A 24 OH TYR A 92 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 34 CB TRP A 34 CG -0.142 REMARK 500 GLU A 37 CD GLU A 37 OE2 0.088 REMARK 500 GLU A 65 CD GLU A 65 OE2 0.075 REMARK 500 TRP B 61 CG TRP B 61 CD1 0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 91 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 CYS A 140 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 GLY A 282 N - CA - C ANGL. DEV. = -15.5 DEGREES REMARK 500 ARG B 13 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 32 149.40 -170.83 REMARK 500 ASP A 36 -116.02 52.55 REMARK 500 SER A 109 122.83 -32.96 REMARK 500 ASN A 131 -66.82 -123.84 REMARK 500 GLN A 154 45.61 -151.03 REMARK 500 TYR A 155 79.87 -159.83 REMARK 500 SER A 168 -51.88 -129.87 REMARK 500 SER A 285 -57.71 -29.93 REMARK 500 ASN B 18 132.35 -34.65 REMARK 500 ASN B 43 45.11 36.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 281 GLY A 282 131.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DAO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DAO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue STE A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 101 DBREF 5C9J A 9 188 UNP P29017 CD1C_HUMAN 24 203 DBREF 5C9J A 189 281 UNP P29016 CD1B_HUMAN 203 295 DBREF 5C9J B 2 99 UNP P61769 B2MG_HUMAN 21 118 SEQADV 5C9J GLY A 282 UNP P29016 EXPRESSION TAG SEQADV 5C9J PRO A 283 UNP P29016 EXPRESSION TAG SEQADV 5C9J GLY A 284 UNP P29016 EXPRESSION TAG SEQADV 5C9J SER A 285 UNP P29016 EXPRESSION TAG SEQADV 5C9J GLY A 286 UNP P29016 EXPRESSION TAG SEQADV 5C9J GLY A 287 UNP P29016 EXPRESSION TAG SEQADV 5C9J GLY A 288 UNP P29016 EXPRESSION TAG SEQADV 5C9J LEU A 289 UNP P29016 EXPRESSION TAG SEQADV 5C9J MET B 1 UNP P61769 INITIATING METHIONINE SEQRES 1 A 281 GLU HIS VAL SER PHE HIS VAL ILE GLN ILE PHE SER PHE SEQRES 2 A 281 VAL ASN GLN SER TRP ALA ARG GLY GLN GLY SER GLY TRP SEQRES 3 A 281 LEU ASP GLU LEU GLN THR HIS GLY TRP ASP SER GLU SER SEQRES 4 A 281 GLY THR ILE ILE PHE LEU HIS ASN TRP SER LYS GLY ASN SEQRES 5 A 281 PHE SER ASN GLU GLU LEU SER ASP LEU GLU LEU LEU PHE SEQRES 6 A 281 ARG PHE TYR LEU PHE GLY LEU THR ARG GLU ILE GLN ASP SEQRES 7 A 281 HIS ALA SER GLN ASP TYR SER LYS TYR PRO PHE GLU VAL SEQRES 8 A 281 GLN VAL LYS ALA GLY CYS GLU LEU HIS SER GLY LYS SER SEQRES 9 A 281 PRO GLU GLY PHE PHE GLN VAL ALA PHE ASN GLY LEU ASP SEQRES 10 A 281 LEU LEU SER PHE GLN ASN THR THR TRP VAL PRO SER PRO SEQRES 11 A 281 GLY CYS GLY SER LEU ALA GLN SER VAL CYS HIS LEU LEU SEQRES 12 A 281 ASN HIS GLN TYR GLU GLY VAL THR GLU THR VAL TYR ASN SEQRES 13 A 281 LEU ILE ARG SER THR CYS PRO ARG PHE LEU LEU GLY LEU SEQRES 14 A 281 LEU ASP ALA GLY LYS MET TYR VAL HIS ARG GLN VAL LYS SEQRES 15 A 281 PRO GLU ALA TRP LEU SER SER GLY PRO SER PRO GLY PRO SEQRES 16 A 281 GLY ARG LEU GLN LEU VAL CYS HIS VAL SER GLY PHE TYR SEQRES 17 A 281 PRO LYS PRO VAL TRP VAL MET TRP MET ARG GLY GLU GLN SEQRES 18 A 281 GLU GLN GLN GLY THR GLN LEU GLY ASP ILE LEU PRO ASN SEQRES 19 A 281 ALA ASN TRP THR TRP TYR LEU ARG ALA THR LEU ASP VAL SEQRES 20 A 281 ALA ASP GLY GLU ALA ALA GLY LEU SER CYS ARG VAL LYS SEQRES 21 A 281 HIS SER SER LEU GLU GLY GLN ASP ILE ILE LEU TYR TRP SEQRES 22 A 281 GLY PRO GLY SER GLY GLY GLY LEU SEQRES 1 B 99 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 99 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 99 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 99 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 99 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 99 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 99 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 99 LYS ILE VAL LYS TRP ASP ARG ASP HET DAO A 301 14 HET DAO A 302 14 HET STE A 303 20 HET GOL A 304 6 HET GOL A 305 6 HET GOL A 306 6 HET PO4 A 307 5 HET PO4 A 308 5 HET GOL B 101 6 HETNAM DAO LAURIC ACID HETNAM STE STEARIC ACID HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 DAO 2(C12 H24 O2) FORMUL 5 STE C18 H36 O2 FORMUL 6 GOL 4(C3 H8 O3) FORMUL 9 PO4 2(O4 P 3-) FORMUL 12 HOH *116(H2 O) HELIX 1 AA1 SER A 62 SER A 89 1 28 HELIX 2 AA2 GLN A 90 TYR A 95 5 6 HELIX 3 AA3 GLY A 141 GLN A 154 1 14 HELIX 4 AA4 TYR A 155 SER A 168 1 14 HELIX 5 AA5 SER A 168 HIS A 186 1 19 HELIX 6 AA6 HIS A 269 GLU A 273 5 5 SHEET 1 AA1 8 THR A 49 PHE A 52 0 SHEET 2 AA1 8 LEU A 38 ASP A 44 -1 N ASP A 44 O THR A 49 SHEET 3 AA1 8 TRP A 26 LEU A 35 -1 N LEU A 35 O LEU A 38 SHEET 4 AA1 8 HIS A 10 ASN A 23 -1 N SER A 20 O ARG A 28 SHEET 5 AA1 8 PHE A 97 HIS A 108 -1 O VAL A 99 N PHE A 19 SHEET 6 AA1 8 GLU A 114 PHE A 121 -1 O PHE A 116 N GLY A 104 SHEET 7 AA1 8 LEU A 124 PHE A 129 -1 O LEU A 126 N VAL A 119 SHEET 8 AA1 8 TRP A 134 PRO A 136 -1 O VAL A 135 N SER A 128 SHEET 1 AA2 4 GLU A 192 GLY A 198 0 SHEET 2 AA2 4 ARG A 205 PHE A 215 -1 O HIS A 211 N TRP A 194 SHEET 3 AA2 4 TRP A 247 ALA A 256 -1 O LEU A 253 N LEU A 208 SHEET 4 AA2 4 GLN A 235 LEU A 236 -1 N GLN A 235 O THR A 252 SHEET 1 AA3 4 GLU A 192 GLY A 198 0 SHEET 2 AA3 4 ARG A 205 PHE A 215 -1 O HIS A 211 N TRP A 194 SHEET 3 AA3 4 TRP A 247 ALA A 256 -1 O LEU A 253 N LEU A 208 SHEET 4 AA3 4 LEU A 240 PRO A 241 -1 N LEU A 240 O TYR A 248 SHEET 1 AA4 4 GLN A 229 GLU A 230 0 SHEET 2 AA4 4 TRP A 221 ARG A 226 -1 N ARG A 226 O GLN A 229 SHEET 3 AA4 4 SER A 264 LYS A 268 -1 O LYS A 268 N TRP A 221 SHEET 4 AA4 4 ILE A 277 TYR A 280 -1 O ILE A 277 N VAL A 267 SHEET 1 AA5 4 LYS B 7 SER B 12 0 SHEET 2 AA5 4 ASN B 22 PHE B 31 -1 O SER B 29 N LYS B 7 SHEET 3 AA5 4 PHE B 63 PHE B 71 -1 O TYR B 67 N CYS B 26 SHEET 4 AA5 4 GLU B 51 HIS B 52 -1 N GLU B 51 O TYR B 68 SHEET 1 AA6 4 LYS B 7 SER B 12 0 SHEET 2 AA6 4 ASN B 22 PHE B 31 -1 O SER B 29 N LYS B 7 SHEET 3 AA6 4 PHE B 63 PHE B 71 -1 O TYR B 67 N CYS B 26 SHEET 4 AA6 4 SER B 56 PHE B 57 -1 N SER B 56 O TYR B 64 SHEET 1 AA7 4 GLU B 45 ARG B 46 0 SHEET 2 AA7 4 GLU B 37 LYS B 42 -1 N LYS B 42 O GLU B 45 SHEET 3 AA7 4 TYR B 79 ASN B 84 -1 O ASN B 84 N GLU B 37 SHEET 4 AA7 4 LYS B 92 LYS B 95 -1 O VAL B 94 N CYS B 81 SSBOND 1 CYS A 105 CYS A 170 1555 1555 2.40 SSBOND 2 CYS A 210 CYS A 265 1555 1555 2.09 SSBOND 3 CYS B 26 CYS B 81 1555 1555 2.03 CISPEP 1 TYR A 95 PRO A 96 0 -9.15 CISPEP 2 TYR A 216 PRO A 217 0 2.27 CISPEP 3 GLY A 282 PRO A 283 0 -11.32 CISPEP 4 HIS B 32 PRO B 33 0 -1.19 SITE 1 AC1 3 GLU A 83 HIS A 87 VAL A 147 SITE 1 AC2 2 HIS A 87 PHE A 121 SITE 1 AC3 5 PHE A 73 TYR A 76 PHE A 117 LEU A 165 SITE 2 AC3 5 PHE A 173 SITE 1 AC4 5 GLY A 110 LYS A 111 LEU A 195 TYR A 280 SITE 2 AC4 5 GLY A 287 SITE 1 AC5 5 ASN A 242 ALA A 243 TRP A 245 HOH A 402 SITE 2 AC5 5 SER B 53 SITE 1 AC6 3 SER A 20 VAL A 22 ARG A 28 SITE 1 AC7 6 ARG A 28 GLY A 29 TRP A 43 SER A 45 SITE 2 AC7 6 HOH A 408 HOH A 421 SITE 1 AC8 6 HIS A 14 TRP A 34 ASP A 36 SER B 56 SITE 2 AC8 6 PHE B 57 TYR B 64 SITE 1 AC9 4 GLY B 44 GLU B 45 ARG B 46 ARG B 82 CRYST1 97.130 97.130 115.080 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010295 0.005944 0.000000 0.00000 SCALE2 0.000000 0.011888 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008690 0.00000