HEADER SUGAR BINDING PROTEIN 27-JUN-15 5C9L TITLE CRYSTAL STRUCTURE OF NATIVE PLL LECTIN FROM PHOTORHABDUS LUMINESCENS TITLE 2 AT 1.65 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLL LECTIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTORHABDUS LUMINESCENS; SOURCE 3 ORGANISM_TAXID: 29488 KEYWDS LECTIN, SEVEN-BLADED BETA-PROPELLER, FUCOSE-SPECIFIC, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.KUMAR,P.SYKOROVA,G.DEMO,P.DOBES,P.HYRSL,M.WIMMEROVA REVDAT 4 07-MAR-18 5C9L 1 REMARK REVDAT 3 07-DEC-16 5C9L 1 JRNL REVDAT 2 02-NOV-16 5C9L 1 JRNL REVDAT 1 19-OCT-16 5C9L 0 JRNL AUTH A.KUMAR,P.SYKOROVA,G.DEMO,P.DOBES,P.HYRSL,M.WIMMEROVA JRNL TITL A NOVEL FUCOSE-BINDING LECTIN FROM PHOTORHABDUS LUMINESCENS JRNL TITL 2 (PLL) WITH AN UNUSUAL HEPTABLADED BETA-PROPELLER TETRAMERIC JRNL TITL 3 STRUCTURE. JRNL REF J.BIOL.CHEM. V. 291 25032 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27758853 JRNL DOI 10.1074/JBC.M115.693473 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 56352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3001 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4029 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.1400 REMARK 3 BIN FREE R VALUE SET COUNT : 250 REMARK 3 BIN FREE R VALUE : 0.1780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2743 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 373 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.048 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2959 ; 0.068 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2689 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4040 ; 2.397 ; 1.884 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6158 ; 1.244 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 377 ; 7.783 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;35.512 ;24.275 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 420 ;11.615 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.513 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 446 ; 0.169 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3410 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 746 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1448 ; 1.952 ; 1.183 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1447 ; 1.950 ; 1.182 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1813 ; 2.762 ; 1.772 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1814 ; 2.762 ; 1.773 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1509 ; 2.821 ; 1.400 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1509 ; 2.812 ; 1.400 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2217 ; 3.882 ; 1.983 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3721 ; 5.874 ;11.238 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3519 ; 5.563 ;10.499 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5C9L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000211261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.005 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59360 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 76.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 0.15400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 14.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MOLREP, SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 10% PEG 4000, 0.2 M REMARK 280 CACL2, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.56000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.83850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 78.84550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.56000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.83850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.84550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.56000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.83850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.84550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.56000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.83850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.84550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 CYCLIC POINT SYMMETRY (SCHOENFLIES SYMBOL = C2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -224.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 71.12000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 71.12000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HG HG A 402 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 862 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ASN A 3 REMARK 465 PRO A 4 REMARK 465 ASP A 5 REMARK 465 ASN A 6 REMARK 465 THR A 7 REMARK 465 GLU A 8 REMARK 465 ALA A 9 REMARK 465 TYR A 10 REMARK 465 VAL A 11 REMARK 465 ALA A 12 REMARK 465 GLY A 13 REMARK 465 GLU A 14 REMARK 465 VAL A 15 REMARK 465 GLU A 16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 109 CB ASN A 109 CG 0.142 REMARK 500 ASP A 251 CB ASP A 251 CG 0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 95 OD1 - CG - OD2 ANGL. DEV. = 12.1 DEGREES REMARK 500 ASP A 95 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 CYS A 227 CA - CB - SG ANGL. DEV. = -13.0 DEGREES REMARK 500 ASP A 228 CB - CG - OD2 ANGL. DEV. = -9.0 DEGREES REMARK 500 ARG A 230 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 LYS A 273 CD - CE - NZ ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG A 284 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 36 -0.28 77.14 REMARK 500 ASN A 60 1.78 -67.62 REMARK 500 ASN A 109 43.88 -91.50 REMARK 500 SER A 113 155.65 74.27 REMARK 500 TYR A 118 -148.70 62.94 REMARK 500 LYS A 214 -158.88 67.08 REMARK 500 SER A 215 -175.21 75.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 872 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 873 DISTANCE = 6.08 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 84 OD2 REMARK 620 2 HIS A 155 O 90.2 REMARK 620 3 HOH A 504 O 64.0 144.5 REMARK 620 4 HOH A 734 O 98.1 71.0 88.1 REMARK 620 5 HOH A 790 O 113.9 152.5 62.5 115.8 REMARK 620 6 HOH A 775 O 172.1 82.9 120.4 76.0 73.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 401 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 128 SG REMARK 620 2 ALA A 175 O 103.5 REMARK 620 3 HOH A 772 O 91.8 107.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 132 OD2 REMARK 620 2 HIS A 203 O 91.4 REMARK 620 3 HOH A 704 O 169.5 78.5 REMARK 620 4 HOH A 778 O 91.6 82.6 84.4 REMARK 620 5 HOH A 805 O 106.8 158.9 83.6 106.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 402 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 862 O REMARK 620 2 HOH A 862 O 0.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 415 DBREF 5C9L A 1 369 UNP Q7N8J0 Q7N8J0_PHOLL 8 376 SEQADV 5C9L GLU A 16 UNP Q7N8J0 ALA 23 CONFLICT SEQADV 5C9L GLY A 93 UNP Q7N8J0 SER 100 CONFLICT SEQADV 5C9L VAL A 139 UNP Q7N8J0 ALA 146 CONFLICT SEQADV 5C9L SER A 142 UNP Q7N8J0 THR 149 CONFLICT SEQADV 5C9L LEU A 177 UNP Q7N8J0 ILE 184 CONFLICT SEQADV 5C9L ASN A 225 UNP Q7N8J0 GLY 232 CONFLICT SEQADV 5C9L SER A 240 UNP Q7N8J0 ASN 247 CONFLICT SEQADV 5C9L GLN A 278 UNP Q7N8J0 ARG 285 CONFLICT SEQADV 5C9L HIS A 298 UNP Q7N8J0 GLN 305 CONFLICT SEQRES 1 A 369 MET PRO ASN PRO ASP ASN THR GLU ALA TYR VAL ALA GLY SEQRES 2 A 369 GLU VAL GLU ILE GLU ASN SER ALA ILE ALA LEU SER GLY SEQRES 3 A 369 ILE VAL SER VAL ALA ASN ASN ALA ASP ASN ARG LEU GLU SEQRES 4 A 369 VAL PHE GLY VAL SER THR ASP SER ALA VAL TRP HIS ASN SEQRES 5 A 369 TRP GLN THR ALA PRO LEU PRO ASN SER SER TRP ALA GLY SEQRES 6 A 369 TRP ASN LYS PHE ASN GLY VAL VAL THR SER LYS PRO ALA SEQRES 7 A 369 VAL HIS ARG ASN SER ASP GLY ARG LEU GLU VAL PHE VAL SEQRES 8 A 369 ARG GLY THR ASP ASN ALA LEU TRP HIS ASN TRP GLN THR SEQRES 9 A 369 ALA ALA ASP THR ASN THR TRP SER SER TRP GLN PRO LEU SEQRES 10 A 369 TYR GLY GLY ILE THR SER ASN PRO GLU VAL CYS LEU ASN SEQRES 11 A 369 SER ASP GLY ARG LEU GLU VAL PHE VAL ARG GLY SER ASP SEQRES 12 A 369 ASN ALA LEU TRP HIS ILE TRP GLN THR ALA ALA HIS THR SEQRES 13 A 369 ASN SER TRP SER ASN TRP LYS SER LEU GLY GLY THR LEU SEQRES 14 A 369 THR SER ASN PRO ALA ALA HIS LEU ASN ALA ASP GLY ARG SEQRES 15 A 369 ILE GLU VAL PHE ALA ARG GLY ALA ASP ASN ALA LEU TRP SEQRES 16 A 369 HIS ILE TRP GLN THR ALA ALA HIS THR ASP GLN TRP SER SEQRES 17 A 369 ASN TRP GLN SER LEU LYS SER VAL ILE THR SER ASP PRO SEQRES 18 A 369 VAL VAL ILE ASN ASN CYS ASP GLY ARG LEU GLU VAL PHE SEQRES 19 A 369 ALA ARG GLY ALA ASP SER THR LEU ARG HIS ILE SER GLN SEQRES 20 A 369 ILE GLY SER ASP SER VAL SER TRP SER ASN TRP GLN CYS SEQRES 21 A 369 LEU ASP GLY VAL ILE THR SER ALA PRO ALA ALA VAL LYS SEQRES 22 A 369 ASN ILE SER GLY GLN LEU GLU VAL PHE ALA ARG GLY ALA SEQRES 23 A 369 ASP ASN THR LEU TRP ARG THR TRP GLN THR SER HIS ASN SEQRES 24 A 369 GLY PRO TRP SER ASN TRP SER SER PHE THR GLY ILE ILE SEQRES 25 A 369 ALA SER ALA PRO THR VAL ALA LYS ASN SER ASP GLY ARG SEQRES 26 A 369 ILE GLU VAL PHE VAL LEU GLY LEU ASP LYS ALA LEU TRP SEQRES 27 A 369 HIS LEU TRP GLN THR THR SER SER THR THR SER SER TRP SEQRES 28 A 369 THR THR TRP ALA LEU ILE GLY GLY ILE THR LEU ILE ASP SEQRES 29 A 369 ALA SER VAL ILE LYS HET HG A 401 1 HET HG A 402 1 HET CA A 403 1 HET CA A 404 1 HET CL A 405 1 HET PG4 A 406 13 HET PG4 A 407 13 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 4 HET EDO A 411 4 HET EDO A 412 4 HET EDO A 413 4 HET EDO A 414 4 HET EDO A 415 4 HETNAM HG MERCURY (II) ION HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 HG 2(HG 2+) FORMUL 4 CA 2(CA 2+) FORMUL 6 CL CL 1- FORMUL 7 PG4 2(C8 H18 O5) FORMUL 9 EDO 8(C2 H6 O2) FORMUL 17 HOH *373(H2 O) SHEET 1 AA1 4 SER A 29 ASN A 32 0 SHEET 2 AA1 4 LEU A 38 SER A 44 -1 O PHE A 41 N SER A 29 SHEET 3 AA1 4 ALA A 48 TRP A 53 -1 O TRP A 50 N GLY A 42 SHEET 4 AA1 4 ASN A 67 VAL A 72 -1 O PHE A 69 N VAL A 49 SHEET 1 AA2 3 SER A 29 ASN A 32 0 SHEET 2 AA2 3 LEU A 38 SER A 44 -1 O PHE A 41 N SER A 29 SHEET 3 AA2 3 LEU A 362 ILE A 363 -1 O ILE A 363 N VAL A 43 SHEET 1 AA3 4 ALA A 78 ARG A 81 0 SHEET 2 AA3 4 LEU A 87 ARG A 92 -1 O PHE A 90 N ALA A 78 SHEET 3 AA3 4 LEU A 98 TRP A 102 -1 O ASN A 101 N VAL A 89 SHEET 4 AA3 4 GLN A 115 TYR A 118 -1 O LEU A 117 N LEU A 98 SHEET 1 AA4 4 GLU A 126 LEU A 129 0 SHEET 2 AA4 4 LEU A 135 ARG A 140 -1 O PHE A 138 N GLU A 126 SHEET 3 AA4 4 LEU A 146 TRP A 150 -1 O TRP A 147 N VAL A 139 SHEET 4 AA4 4 LYS A 163 GLY A 166 -1 O LEU A 165 N LEU A 146 SHEET 1 AA5 4 ALA A 174 LEU A 177 0 SHEET 2 AA5 4 ILE A 183 ARG A 188 -1 O PHE A 186 N ALA A 174 SHEET 3 AA5 4 ALA A 193 TRP A 198 -1 O ILE A 197 N VAL A 185 SHEET 4 AA5 4 GLN A 211 VAL A 216 -1 O LEU A 213 N LEU A 194 SHEET 1 AA6 4 VAL A 222 ASN A 225 0 SHEET 2 AA6 4 LEU A 231 ARG A 236 -1 O PHE A 234 N VAL A 222 SHEET 3 AA6 4 THR A 241 SER A 246 -1 O ARG A 243 N ALA A 235 SHEET 4 AA6 4 GLN A 259 VAL A 264 -1 O GLN A 259 N HIS A 244 SHEET 1 AA7 4 ALA A 270 LYS A 273 0 SHEET 2 AA7 4 LEU A 279 ARG A 284 -1 O PHE A 282 N ALA A 270 SHEET 3 AA7 4 THR A 289 TRP A 294 -1 O TRP A 291 N ALA A 283 SHEET 4 AA7 4 SER A 306 ILE A 311 -1 O SER A 306 N ARG A 292 SHEET 1 AA8 4 THR A 317 LYS A 320 0 SHEET 2 AA8 4 ILE A 326 LEU A 331 -1 O PHE A 329 N THR A 317 SHEET 3 AA8 4 LEU A 337 TRP A 341 -1 O LEU A 340 N VAL A 328 SHEET 4 AA8 4 ALA A 355 ILE A 357 -1 O ILE A 357 N LEU A 337 SSBOND 1 CYS A 260 CYS A 260 1555 3655 2.03 LINK OD2 ASP A 84 CA CA A 404 1555 1555 2.42 LINK SG CYS A 128 HG HG A 401 1555 1555 2.42 LINK OD2 ASP A 132 CA CA A 403 1555 1555 2.43 LINK O HIS A 155 CA CA A 404 1555 1555 2.49 LINK O ALA A 175 HG HG A 401 1555 1555 2.87 LINK O HIS A 203 CA CA A 403 1555 1555 2.48 LINK HG HG A 401 O HOH A 772 1555 1555 3.06 LINK HG HG A 402 O HOH A 862 1555 1555 2.60 LINK CA CA A 403 O HOH A 704 1555 1555 2.21 LINK CA CA A 403 O HOH A 778 1555 1555 2.29 LINK CA CA A 403 O HOH A 805 1555 1555 2.55 LINK CA CA A 404 O HOH A 504 1555 1555 2.29 LINK CA CA A 404 O HOH A 734 1555 1555 2.60 LINK CA CA A 404 O HOH A 790 1555 1555 2.26 LINK CA CA A 404 O HOH A 775 1555 1555 2.21 LINK HG HG A 402 O HOH A 862 1555 4555 2.60 CISPEP 1 GLY A 300 PRO A 301 0 -8.69 SITE 1 AC1 5 CYS A 128 ALA A 175 HIS A 176 CL A 405 SITE 2 AC1 5 HOH A 772 SITE 1 AC2 2 HIS A 298 HOH A 862 SITE 1 AC3 5 ASP A 132 HIS A 203 HOH A 704 HOH A 778 SITE 2 AC3 5 HOH A 805 SITE 1 AC4 6 ASP A 84 HIS A 155 HOH A 504 HOH A 734 SITE 2 AC4 6 HOH A 775 HOH A 790 SITE 1 AC5 5 GLU A 126 VAL A 127 CYS A 128 ALA A 175 SITE 2 AC5 5 HG A 401 SITE 1 AC6 5 ARG A 140 SER A 142 ASN A 144 LEU A 169 SITE 2 AC6 5 ALA A 190 SITE 1 AC7 7 ALA A 34 ASN A 36 ARG A 81 ASN A 130 SITE 2 AC7 7 SER A 131 ASN A 321 HOH A 530 SITE 1 AC8 5 GLY A 119 GLY A 120 ILE A 121 TRP A 147 SITE 2 AC8 5 TRP A 162 SITE 1 AC9 1 TRP A 291 SITE 1 AD1 1 THR A 45 SITE 1 AD2 5 GLY A 167 THR A 168 ARG A 188 GLY A 189 SITE 2 AD2 5 TRP A 195 SITE 1 AD3 2 ILE A 311 TRP A 354 SITE 1 AD4 5 VAL A 72 GLY A 93 THR A 94 TRP A 99 SITE 2 AD4 5 HOH A 558 SITE 1 AD5 4 ARG A 292 SER A 306 SER A 307 PHE A 308 SITE 1 AD6 1 SER A 164 CRYST1 71.120 87.677 157.691 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014061 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011405 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006342 0.00000