HEADER GENE REGULATION 28-JUN-15 5C9S TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF RRP5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RRNA BIOGENESIS PROTEIN RRP5; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: UNP RESIDUES 1163-1729; COMPND 5 SYNONYM: RIBOSOMAL RNA-PROCESSING PROTEIN 5,U3 SMALL NUCLEOLAR RNA- COMPND 6 ASSOCIATED PROTEIN RRP5,U3 SNORNA-ASSOCIATED PROTEIN RRP5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: RRP5, FMI1, YMR229C, YM9959.11C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3) KEYWDS RIBOSOME BIOGENESIS, ASSEMBLY FACTOR, TPR, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR S.KHOSHNEVIS,K.KARBSTEIN REVDAT 4 06-MAR-24 5C9S 1 REMARK REVDAT 3 25-DEC-19 5C9S 1 REMARK REVDAT 2 20-SEP-17 5C9S 1 REMARK REVDAT 1 18-MAY-16 5C9S 0 JRNL AUTH S.KHOSHNEVIS,K.KARBSTEIN JRNL TITL CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF RRP5 JRNL REF PLOS BIOL. 2016 JRNL REFN ESSN 1545-7885 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14280 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6778 - 4.6159 1.00 2808 138 0.2062 0.2387 REMARK 3 2 4.6159 - 3.6643 1.00 2722 137 0.1907 0.2535 REMARK 3 3 3.6643 - 3.2013 1.00 2687 156 0.2272 0.2928 REMARK 3 4 3.2013 - 2.9087 1.00 2665 142 0.2479 0.3173 REMARK 3 5 2.9087 - 2.7002 1.00 2680 145 0.2898 0.3932 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 21.69 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.040 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.34710 REMARK 3 B22 (A**2) : -5.34710 REMARK 3 B33 (A**2) : 10.69430 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2307 REMARK 3 ANGLE : 1.008 3102 REMARK 3 CHIRALITY : 0.077 335 REMARK 3 PLANARITY : 0.004 395 REMARK 3 DIHEDRAL : 18.005 864 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C9S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000211278. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97530 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14309 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 57.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.18500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMUNIOM TARTRATE, 20% PEG3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.22667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.61333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 22.61333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.22667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 1158 REMARK 465 PRO B 1159 REMARK 465 LEU B 1160 REMARK 465 GLY B 1161 REMARK 465 SER B 1162 REMARK 465 ALA B 1163 REMARK 465 LYS B 1164 REMARK 465 THR B 1165 REMARK 465 ARG B 1166 REMARK 465 SER B 1167 REMARK 465 ILE B 1168 REMARK 465 LYS B 1169 REMARK 465 SER B 1170 REMARK 465 HIS B 1171 REMARK 465 GLU B 1172 REMARK 465 ASP B 1173 REMARK 465 LEU B 1174 REMARK 465 LYS B 1175 REMARK 465 GLN B 1176 REMARK 465 GLY B 1177 REMARK 465 GLU B 1178 REMARK 465 ILE B 1179 REMARK 465 VAL B 1180 REMARK 465 ASP B 1181 REMARK 465 GLY B 1182 REMARK 465 ILE B 1183 REMARK 465 VAL B 1184 REMARK 465 LYS B 1185 REMARK 465 ASN B 1186 REMARK 465 VAL B 1187 REMARK 465 ASN B 1188 REMARK 465 ASP B 1189 REMARK 465 LYS B 1190 REMARK 465 GLY B 1191 REMARK 465 ILE B 1192 REMARK 465 PHE B 1193 REMARK 465 VAL B 1194 REMARK 465 TYR B 1195 REMARK 465 LEU B 1196 REMARK 465 SER B 1197 REMARK 465 ARG B 1198 REMARK 465 LYS B 1199 REMARK 465 VAL B 1200 REMARK 465 GLU B 1201 REMARK 465 ALA B 1202 REMARK 465 PHE B 1203 REMARK 465 VAL B 1204 REMARK 465 PRO B 1205 REMARK 465 VAL B 1206 REMARK 465 SER B 1207 REMARK 465 LYS B 1208 REMARK 465 LEU B 1209 REMARK 465 SER B 1210 REMARK 465 ASP B 1211 REMARK 465 SER B 1212 REMARK 465 TYR B 1213 REMARK 465 LEU B 1214 REMARK 465 LYS B 1215 REMARK 465 GLU B 1216 REMARK 465 TRP B 1217 REMARK 465 LYS B 1218 REMARK 465 LYS B 1219 REMARK 465 PHE B 1220 REMARK 465 TYR B 1221 REMARK 465 LYS B 1222 REMARK 465 PRO B 1223 REMARK 465 MET B 1224 REMARK 465 GLN B 1225 REMARK 465 TYR B 1226 REMARK 465 VAL B 1227 REMARK 465 LEU B 1228 REMARK 465 GLY B 1229 REMARK 465 LYS B 1230 REMARK 465 VAL B 1231 REMARK 465 VAL B 1232 REMARK 465 THR B 1233 REMARK 465 CYS B 1234 REMARK 465 ASP B 1235 REMARK 465 GLU B 1236 REMARK 465 ASP B 1237 REMARK 465 SER B 1238 REMARK 465 ARG B 1239 REMARK 465 ILE B 1240 REMARK 465 SER B 1241 REMARK 465 LEU B 1242 REMARK 465 THR B 1243 REMARK 465 LEU B 1244 REMARK 465 ARG B 1245 REMARK 465 GLU B 1246 REMARK 465 SER B 1247 REMARK 465 GLU B 1248 REMARK 465 ILE B 1249 REMARK 465 ASN B 1250 REMARK 465 GLY B 1251 REMARK 465 ASP B 1252 REMARK 465 LEU B 1253 REMARK 465 LYS B 1254 REMARK 465 VAL B 1255 REMARK 465 LEU B 1256 REMARK 465 LYS B 1257 REMARK 465 THR B 1258 REMARK 465 TYR B 1259 REMARK 465 SER B 1260 REMARK 465 ASP B 1261 REMARK 465 ILE B 1262 REMARK 465 LYS B 1263 REMARK 465 ALA B 1264 REMARK 465 GLY B 1265 REMARK 465 ASP B 1266 REMARK 465 VAL B 1267 REMARK 465 PHE B 1268 REMARK 465 GLU B 1269 REMARK 465 GLY B 1270 REMARK 465 THR B 1271 REMARK 465 ILE B 1272 REMARK 465 LYS B 1273 REMARK 465 SER B 1274 REMARK 465 VAL B 1275 REMARK 465 THR B 1276 REMARK 465 ASP B 1277 REMARK 465 PHE B 1278 REMARK 465 GLY B 1279 REMARK 465 VAL B 1280 REMARK 465 PHE B 1281 REMARK 465 VAL B 1282 REMARK 465 LYS B 1283 REMARK 465 LEU B 1284 REMARK 465 ASP B 1285 REMARK 465 ASN B 1286 REMARK 465 THR B 1287 REMARK 465 VAL B 1288 REMARK 465 ASN B 1289 REMARK 465 VAL B 1290 REMARK 465 THR B 1291 REMARK 465 GLY B 1292 REMARK 465 LEU B 1293 REMARK 465 ALA B 1294 REMARK 465 HIS B 1295 REMARK 465 ILE B 1296 REMARK 465 THR B 1297 REMARK 465 GLU B 1298 REMARK 465 ILE B 1299 REMARK 465 ALA B 1300 REMARK 465 ASP B 1301 REMARK 465 LYS B 1302 REMARK 465 LYS B 1303 REMARK 465 PRO B 1304 REMARK 465 GLU B 1305 REMARK 465 ASP B 1306 REMARK 465 LEU B 1307 REMARK 465 SER B 1308 REMARK 465 ALA B 1309 REMARK 465 LEU B 1310 REMARK 465 PHE B 1311 REMARK 465 GLY B 1312 REMARK 465 VAL B 1313 REMARK 465 GLY B 1314 REMARK 465 ASP B 1315 REMARK 465 ARG B 1316 REMARK 465 VAL B 1317 REMARK 465 LYS B 1318 REMARK 465 ALA B 1319 REMARK 465 ILE B 1320 REMARK 465 VAL B 1321 REMARK 465 LEU B 1322 REMARK 465 LYS B 1323 REMARK 465 THR B 1324 REMARK 465 ASN B 1325 REMARK 465 PRO B 1326 REMARK 465 GLU B 1327 REMARK 465 LYS B 1328 REMARK 465 LYS B 1329 REMARK 465 GLN B 1330 REMARK 465 ILE B 1331 REMARK 465 SER B 1332 REMARK 465 LEU B 1333 REMARK 465 SER B 1334 REMARK 465 LEU B 1335 REMARK 465 LYS B 1336 REMARK 465 ALA B 1337 REMARK 465 SER B 1338 REMARK 465 HIS B 1339 REMARK 465 PHE B 1340 REMARK 465 SER B 1341 REMARK 465 LYS B 1342 REMARK 465 GLU B 1343 REMARK 465 ALA B 1344 REMARK 465 GLU B 1345 REMARK 465 LEU B 1346 REMARK 465 ALA B 1347 REMARK 465 SER B 1348 REMARK 465 THR B 1349 REMARK 465 THR B 1350 REMARK 465 THR B 1351 REMARK 465 THR B 1352 REMARK 465 THR B 1353 REMARK 465 THR B 1354 REMARK 465 THR B 1355 REMARK 465 VAL B 1356 REMARK 465 ASP B 1357 REMARK 465 GLN B 1358 REMARK 465 LEU B 1359 REMARK 465 GLU B 1360 REMARK 465 LYS B 1361 REMARK 465 GLU B 1362 REMARK 465 ASP B 1363 REMARK 465 GLU B 1364 REMARK 465 ASP B 1365 REMARK 465 GLU B 1366 REMARK 465 VAL B 1367 REMARK 465 MET B 1368 REMARK 465 ALA B 1369 REMARK 465 ASP B 1370 REMARK 465 ALA B 1371 REMARK 465 GLY B 1372 REMARK 465 PHE B 1373 REMARK 465 ASN B 1374 REMARK 465 ASP B 1375 REMARK 465 SER B 1376 REMARK 465 ASP B 1377 REMARK 465 SER B 1378 REMARK 465 GLU B 1379 REMARK 465 SER B 1380 REMARK 465 ASP B 1381 REMARK 465 ILE B 1382 REMARK 465 GLY B 1383 REMARK 465 ASP B 1384 REMARK 465 GLN B 1385 REMARK 465 ASN B 1386 REMARK 465 THR B 1387 REMARK 465 GLU B 1388 REMARK 465 VAL B 1389 REMARK 465 ALA B 1390 REMARK 465 ASP B 1391 REMARK 465 ARG B 1392 REMARK 465 LYS B 1393 REMARK 465 PRO B 1394 REMARK 465 GLU B 1395 REMARK 465 THR B 1396 REMARK 465 SER B 1397 REMARK 465 SER B 1398 REMARK 465 ASP B 1399 REMARK 465 GLY B 1400 REMARK 465 LEU B 1401 REMARK 465 SER B 1402 REMARK 465 LEU B 1403 REMARK 465 SER B 1404 REMARK 465 ALA B 1405 REMARK 465 GLY B 1406 REMARK 465 PHE B 1407 REMARK 465 GLU B 1419 REMARK 465 GLU B 1420 REMARK 465 GLU B 1421 REMARK 465 GLU B 1422 REMARK 465 SER B 1423 REMARK 465 ASP B 1424 REMARK 465 GLN B 1425 REMARK 465 ASP B 1426 REMARK 465 GLN B 1427 REMARK 465 GLU B 1428 REMARK 465 ASP B 1429 REMARK 465 PHE B 1430 REMARK 465 THR B 1431 REMARK 465 GLU B 1432 REMARK 465 ASN B 1433 REMARK 465 LYS B 1434 REMARK 465 LYS B 1435 REMARK 465 HIS B 1436 REMARK 465 LYS B 1437 REMARK 465 HIS B 1438 REMARK 465 LYS B 1439 REMARK 465 ARG B 1440 REMARK 465 ARG B 1441 REMARK 465 LYS B 1442 REMARK 465 GLU B 1443 REMARK 465 ASN B 1444 REMARK 465 VAL B 1445 REMARK 465 VAL B 1446 REMARK 465 GLN B 1447 REMARK 465 ASP B 1448 REMARK 465 LYS B 1449 REMARK 465 THR B 1450 REMARK 465 ILE B 1451 REMARK 465 ASP B 1452 REMARK 465 ILE B 1453 REMARK 465 ASN B 1454 REMARK 465 THR B 1455 REMARK 465 ARG B 1456 REMARK 465 HIS B 1722 REMARK 465 GLU B 1723 REMARK 465 SER B 1724 REMARK 465 GLN B 1725 REMARK 465 LYS B 1726 REMARK 465 ALA B 1727 REMARK 465 ASP B 1728 REMARK 465 GLU B 1729 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 1689 ND2 ASN B 1693 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B1541 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B1580 -35.97 -136.70 REMARK 500 PRO B1613 172.93 -59.19 REMARK 500 PRO B1649 -1.65 -55.67 REMARK 500 VAL B1663 13.54 -68.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 1801 DBREF 5C9S B 1163 1729 UNP Q05022 RRP5_YEAST 1163 1729 SEQADV 5C9S GLY B 1158 UNP Q05022 EXPRESSION TAG SEQADV 5C9S PRO B 1159 UNP Q05022 EXPRESSION TAG SEQADV 5C9S LEU B 1160 UNP Q05022 EXPRESSION TAG SEQADV 5C9S GLY B 1161 UNP Q05022 EXPRESSION TAG SEQADV 5C9S SER B 1162 UNP Q05022 EXPRESSION TAG SEQRES 1 B 572 GLY PRO LEU GLY SER ALA LYS THR ARG SER ILE LYS SER SEQRES 2 B 572 HIS GLU ASP LEU LYS GLN GLY GLU ILE VAL ASP GLY ILE SEQRES 3 B 572 VAL LYS ASN VAL ASN ASP LYS GLY ILE PHE VAL TYR LEU SEQRES 4 B 572 SER ARG LYS VAL GLU ALA PHE VAL PRO VAL SER LYS LEU SEQRES 5 B 572 SER ASP SER TYR LEU LYS GLU TRP LYS LYS PHE TYR LYS SEQRES 6 B 572 PRO MET GLN TYR VAL LEU GLY LYS VAL VAL THR CYS ASP SEQRES 7 B 572 GLU ASP SER ARG ILE SER LEU THR LEU ARG GLU SER GLU SEQRES 8 B 572 ILE ASN GLY ASP LEU LYS VAL LEU LYS THR TYR SER ASP SEQRES 9 B 572 ILE LYS ALA GLY ASP VAL PHE GLU GLY THR ILE LYS SER SEQRES 10 B 572 VAL THR ASP PHE GLY VAL PHE VAL LYS LEU ASP ASN THR SEQRES 11 B 572 VAL ASN VAL THR GLY LEU ALA HIS ILE THR GLU ILE ALA SEQRES 12 B 572 ASP LYS LYS PRO GLU ASP LEU SER ALA LEU PHE GLY VAL SEQRES 13 B 572 GLY ASP ARG VAL LYS ALA ILE VAL LEU LYS THR ASN PRO SEQRES 14 B 572 GLU LYS LYS GLN ILE SER LEU SER LEU LYS ALA SER HIS SEQRES 15 B 572 PHE SER LYS GLU ALA GLU LEU ALA SER THR THR THR THR SEQRES 16 B 572 THR THR THR VAL ASP GLN LEU GLU LYS GLU ASP GLU ASP SEQRES 17 B 572 GLU VAL MET ALA ASP ALA GLY PHE ASN ASP SER ASP SER SEQRES 18 B 572 GLU SER ASP ILE GLY ASP GLN ASN THR GLU VAL ALA ASP SEQRES 19 B 572 ARG LYS PRO GLU THR SER SER ASP GLY LEU SER LEU SER SEQRES 20 B 572 ALA GLY PHE ASP TRP THR ALA SER ILE LEU ASP GLN ALA SEQRES 21 B 572 GLN GLU GLU GLU GLU SER ASP GLN ASP GLN GLU ASP PHE SEQRES 22 B 572 THR GLU ASN LYS LYS HIS LYS HIS LYS ARG ARG LYS GLU SEQRES 23 B 572 ASN VAL VAL GLN ASP LYS THR ILE ASP ILE ASN THR ARG SEQRES 24 B 572 ALA PRO GLU SER VAL ALA ASP PHE GLU ARG LEU LEU ILE SEQRES 25 B 572 GLY ASN PRO ASN SER SER VAL VAL TRP MET ASN TYR MET SEQRES 26 B 572 ALA PHE GLN LEU GLN LEU SER GLU ILE GLU LYS ALA ARG SEQRES 27 B 572 GLU LEU ALA GLU ARG ALA LEU LYS THR ILE ASN PHE ARG SEQRES 28 B 572 GLU GLU ALA GLU LYS LEU ASN ILE TRP ILE ALA MET LEU SEQRES 29 B 572 ASN LEU GLU ASN THR PHE GLY THR GLU GLU THR LEU GLU SEQRES 30 B 572 GLU VAL PHE SER ARG ALA CYS GLN TYR MET ASP SER TYR SEQRES 31 B 572 THR ILE HIS THR LYS LEU LEU GLY ILE TYR GLU ILE SER SEQRES 32 B 572 GLU LYS PHE ASP LYS ALA ALA GLU LEU PHE LYS ALA THR SEQRES 33 B 572 ALA LYS LYS PHE GLY GLY GLU LYS VAL SER ILE TRP VAL SEQRES 34 B 572 SER TRP GLY ASP PHE LEU ILE SER HIS ASN GLU GLU GLN SEQRES 35 B 572 GLU ALA ARG THR ILE LEU GLY ASN ALA LEU LYS ALA LEU SEQRES 36 B 572 PRO LYS ARG ASN HIS ILE GLU VAL VAL ARG LYS PHE ALA SEQRES 37 B 572 GLN LEU GLU PHE ALA LYS GLY ASP PRO GLU ARG GLY ARG SEQRES 38 B 572 SER LEU PHE GLU GLY LEU VAL ALA ASP ALA PRO LYS ARG SEQRES 39 B 572 ILE ASP LEU TRP ASN VAL TYR VAL ASP GLN GLU VAL LYS SEQRES 40 B 572 ALA LYS ASP LYS LYS LYS VAL GLU ASP LEU PHE GLU ARG SEQRES 41 B 572 ILE ILE THR LYS LYS ILE THR ARG LYS GLN ALA LYS PHE SEQRES 42 B 572 PHE PHE ASN LYS TRP LEU GLN PHE GLU GLU SER GLU GLY SEQRES 43 B 572 ASP GLU LYS THR ILE GLU TYR VAL LYS ALA LYS ALA THR SEQRES 44 B 572 GLU TYR VAL ALA SER HIS GLU SER GLN LYS ALA ASP GLU HET GOL B1801 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *53(H2 O) HELIX 1 AA1 ASP B 1408 ALA B 1417 1 10 HELIX 2 AA2 SER B 1460 ASN B 1471 1 12 HELIX 3 AA3 SER B 1474 LEU B 1488 1 15 HELIX 4 AA4 GLU B 1490 ILE B 1505 1 16 HELIX 5 AA5 GLU B 1509 GLY B 1528 1 20 HELIX 6 AA6 THR B 1529 MET B 1544 1 16 HELIX 7 AA7 ASP B 1545 GLU B 1561 1 17 HELIX 8 AA8 LYS B 1562 GLY B 1578 1 17 HELIX 9 AA9 VAL B 1582 HIS B 1595 1 14 HELIX 10 AB1 GLU B 1597 LEU B 1612 1 16 HELIX 11 AB2 PRO B 1613 ARG B 1615 5 3 HELIX 12 AB3 ASN B 1616 LYS B 1631 1 16 HELIX 13 AB4 ASP B 1633 ALA B 1648 1 16 HELIX 14 AB5 ARG B 1651 LYS B 1666 1 16 HELIX 15 AB6 ASP B 1667 THR B 1680 1 14 HELIX 16 AB7 THR B 1684 GLY B 1703 1 20 HELIX 17 AB8 ASP B 1704 ALA B 1720 1 17 SITE 1 AC1 4 ILE B1618 GLU B1619 ARG B1622 ARG B1651 CRYST1 114.140 114.140 67.840 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008761 0.005058 0.000000 0.00000 SCALE2 0.000000 0.010117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014741 0.00000