HEADER VIRAL PROTEIN, SUGAR BINDING PROTEIN 29-JUN-15 5CA6 TITLE CRYSTALLOGRAPHIC STRUCTURE OF APO PORCINE ROTAVIRUS TFR-41 VP8* COMPND MOL_ID: 1; COMPND 2 MOLECULE: PORCINE ROTAVIRUS TFR-41 VP8*; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORCINE ROTAVIRUS (SEROTYPE 5 / STRAIN TFR-41); SOURCE 3 ORGANISM_TAXID: 31581; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS CARBOHYDRATE-RECOGNIZING PROTEIN, LECTIN, ROTAVIRUS, VIRAL PROTEIN, KEYWDS 2 SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.YU,H.BLANCHARD REVDAT 4 27-SEP-23 5CA6 1 REMARK REVDAT 3 08-JAN-20 5CA6 1 REMARK REVDAT 2 20-SEP-17 5CA6 1 REMARK REVDAT 1 08-JUN-16 5CA6 0 JRNL AUTH X.YU,R.MISHRA,G.HOLLOWAY,M.VON ITZSTEIN,B.S.COULSON, JRNL AUTH 2 H.BLANCHARD JRNL TITL SUBSTANTIAL RECEPTOR-INDUCED STRUCTURAL REARRANGEMENT OF JRNL TITL 2 ROTAVIRUS VP8*: POTENTIAL IMPLICATIONS FOR CROSS-SPECIES JRNL TITL 3 INFECTION. JRNL REF CHEMBIOCHEM V. 16 2176 2015 JRNL REFN ESSN 1439-7633 JRNL PMID 26250751 JRNL DOI 10.1002/CBIC.201500360 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 21861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1170 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1340 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.1610 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.1920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2536 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.24000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.176 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.107 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2736 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2504 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3738 ; 1.228 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5784 ; 0.724 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 6.324 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;34.360 ;24.833 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 398 ;10.241 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 8.622 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3093 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 641 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1300 ; 0.505 ; 1.126 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1301 ; 0.505 ; 1.128 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1631 ; 0.857 ; 1.682 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1632 ; 0.858 ; 1.682 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1436 ; 0.654 ; 1.247 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1437 ; 0.654 ; 1.247 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2103 ; 1.068 ; 1.818 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3268 ; 4.198 ;10.440 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3269 ; 4.197 ;10.444 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5CA6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000211284. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23031 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 42.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.14800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2I2S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.4 AND 2 M AMMONIUM REMARK 280 FORMATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.40800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.22200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.40800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.22200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 529 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 568 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 64 REMARK 465 LEU A 65 REMARK 465 GLY A 66 REMARK 465 LEU B 64 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 423 O HOH A 456 2.05 REMARK 500 NE2 GLN A 124 O HOH A 401 2.07 REMARK 500 OH TYR B 194 O2 VCA B 305 2.12 REMARK 500 OH TYR B 194 O HOH B 401 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 407 O HOH B 495 1565 2.01 REMARK 500 O HOH A 405 O HOH A 477 1565 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 98 13.19 59.50 REMARK 500 THR A 99 -66.74 -120.32 REMARK 500 ALA A 114 124.91 -36.88 REMARK 500 SER A 190 25.65 -149.57 REMARK 500 THR B 99 -69.46 -132.84 REMARK 500 SER B 190 25.91 -152.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VCA B 305 DBREF 5CA6 A 64 224 PDB 5CA6 5CA6 64 224 DBREF 5CA6 B 64 224 PDB 5CA6 5CA6 64 224 SEQRES 1 A 161 LEU LEU GLY GLY PRO TYR GLN PRO THR THR VAL ASN PRO SEQRES 2 A 161 PRO THR SER TYR TRP ILE LEU LEU ALA PRO THR ILE GLU SEQRES 3 A 161 GLY VAL ILE VAL GLN GLY THR ASN ASN THR ASP ARG TRP SEQRES 4 A 161 LEU ALA THR ILE LEU ILE GLU PRO ASN VAL GLN ALA THR SEQRES 5 A 161 ASP ARG ILE TYR ASN LEU PHE GLY GLN GLN VAL THR LEU SEQRES 6 A 161 SER VAL GLU ASN THR SER GLN THR GLN TRP LYS PHE ILE SEQRES 7 A 161 ASP VAL SER LYS THR THR PRO THR GLY ASN TYR THR GLN SEQRES 8 A 161 HIS GLY PRO LEU PHE SER THR PRO LYS LEU TYR ALA VAL SEQRES 9 A 161 MET LYS PHE SER GLY ARG ILE TYR THR TYR ASN GLY THR SEQRES 10 A 161 THR PRO ASN ALA THR THR GLY TYR TYR SER THR THR ASN SEQRES 11 A 161 TYR ASP THR VAL ASN MET THR SER PHE CYS ASP PHE TYR SEQRES 12 A 161 LEU ILE PRO ARG ASN GLN GLU GLU LYS CYS ALA GLU TYR SEQRES 13 A 161 ILE ASN HIS GLY LEU SEQRES 1 B 161 LEU LEU GLY GLY PRO TYR GLN PRO THR THR VAL ASN PRO SEQRES 2 B 161 PRO THR SER TYR TRP ILE LEU LEU ALA PRO THR ILE GLU SEQRES 3 B 161 GLY VAL ILE VAL GLN GLY THR ASN ASN THR ASP ARG TRP SEQRES 4 B 161 LEU ALA THR ILE LEU ILE GLU PRO ASN VAL GLN ALA THR SEQRES 5 B 161 ASP ARG ILE TYR ASN LEU PHE GLY GLN GLN VAL THR LEU SEQRES 6 B 161 SER VAL GLU ASN THR SER GLN THR GLN TRP LYS PHE ILE SEQRES 7 B 161 ASP VAL SER LYS THR THR PRO THR GLY ASN TYR THR GLN SEQRES 8 B 161 HIS GLY PRO LEU PHE SER THR PRO LYS LEU TYR ALA VAL SEQRES 9 B 161 MET LYS PHE SER GLY ARG ILE TYR THR TYR ASN GLY THR SEQRES 10 B 161 THR PRO ASN ALA THR THR GLY TYR TYR SER THR THR ASN SEQRES 11 B 161 TYR ASP THR VAL ASN MET THR SER PHE CYS ASP PHE TYR SEQRES 12 B 161 LEU ILE PRO ARG ASN GLN GLU GLU LYS CYS ALA GLU TYR SEQRES 13 B 161 ILE ASN HIS GLY LEU HET GOL A 301 6 HET GOL A 302 6 HET GOL A 303 6 HET FMT A 304 3 HET FMT A 305 3 HET FMT A 306 3 HET PLM A 307 18 HET GOL B 301 6 HET GOL B 302 6 HET GOL B 303 6 HET FMT B 304 3 HET VCA B 305 20 HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETNAM PLM PALMITIC ACID HETNAM VCA VACCENIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN VCA (11E)-OCTADEC-11-ENOIC ACID FORMUL 3 GOL 6(C3 H8 O3) FORMUL 6 FMT 4(C H2 O2) FORMUL 9 PLM C16 H32 O2 FORMUL 14 VCA C18 H34 O2 FORMUL 15 HOH *332(H2 O) HELIX 1 AA1 GLN A 212 GLY A 223 1 12 HELIX 2 AA2 GLN B 212 GLY B 223 1 12 SHEET 1 AA1 8 THR A 73 VAL A 74 0 SHEET 2 AA1 8 MET A 199 SER A 201 -1 O MET A 199 N VAL A 74 SHEET 3 AA1 8 GLY A 90 THR A 96 -1 N GLN A 94 O THR A 200 SHEET 4 AA1 8 TRP A 102 ILE A 108 -1 O LEU A 103 N GLY A 95 SHEET 5 AA1 8 TRP A 138 LYS A 145 -1 O ILE A 141 N ILE A 106 SHEET 6 AA1 8 THR A 153 SER A 160 -1 O SER A 160 N TRP A 138 SHEET 7 AA1 8 ARG A 173 THR A 180 1 O GLY A 179 N PHE A 159 SHEET 8 AA1 8 THR A 185 TYR A 189 -1 O TYR A 189 N ILE A 174 SHEET 1 AA210 THR A 73 VAL A 74 0 SHEET 2 AA210 MET A 199 SER A 201 -1 O MET A 199 N VAL A 74 SHEET 3 AA210 GLY A 90 THR A 96 -1 N GLN A 94 O THR A 200 SHEET 4 AA210 TRP A 102 ILE A 108 -1 O LEU A 103 N GLY A 95 SHEET 5 AA210 TRP A 138 LYS A 145 -1 O ILE A 141 N ILE A 106 SHEET 6 AA210 THR A 153 SER A 160 -1 O SER A 160 N TRP A 138 SHEET 7 AA210 ARG A 173 THR A 180 1 O GLY A 179 N PHE A 159 SHEET 8 AA210 TYR A 165 PHE A 170 -1 N MET A 168 O TYR A 175 SHEET 9 AA210 TYR A 80 ALA A 85 -1 N LEU A 84 O TYR A 165 SHEET 10 AA210 ASP A 204 PRO A 209 -1 O ILE A 208 N TRP A 81 SHEET 1 AA3 2 VAL A 112 LEU A 121 0 SHEET 2 AA3 2 GLN A 124 ASN A 132 -1 O ASN A 132 N VAL A 112 SHEET 1 AA4 8 THR B 73 VAL B 74 0 SHEET 2 AA4 8 MET B 199 SER B 201 -1 O MET B 199 N VAL B 74 SHEET 3 AA4 8 GLY B 90 THR B 96 -1 N GLN B 94 O THR B 200 SHEET 4 AA4 8 TRP B 102 ILE B 108 -1 O LEU B 103 N GLY B 95 SHEET 5 AA4 8 TRP B 138 LYS B 145 -1 O VAL B 143 N ALA B 104 SHEET 6 AA4 8 THR B 153 SER B 160 -1 O SER B 160 N TRP B 138 SHEET 7 AA4 8 ARG B 173 THR B 180 1 O GLY B 179 N PHE B 159 SHEET 8 AA4 8 THR B 185 TYR B 189 -1 O GLY B 187 N THR B 176 SHEET 1 AA510 THR B 73 VAL B 74 0 SHEET 2 AA510 MET B 199 SER B 201 -1 O MET B 199 N VAL B 74 SHEET 3 AA510 GLY B 90 THR B 96 -1 N GLN B 94 O THR B 200 SHEET 4 AA510 TRP B 102 ILE B 108 -1 O LEU B 103 N GLY B 95 SHEET 5 AA510 TRP B 138 LYS B 145 -1 O VAL B 143 N ALA B 104 SHEET 6 AA510 THR B 153 SER B 160 -1 O SER B 160 N TRP B 138 SHEET 7 AA510 ARG B 173 THR B 180 1 O GLY B 179 N PHE B 159 SHEET 8 AA510 TYR B 165 PHE B 170 -1 N MET B 168 O TYR B 175 SHEET 9 AA510 TYR B 80 LEU B 84 -1 N LEU B 84 O TYR B 165 SHEET 10 AA510 PHE B 205 PRO B 209 -1 O ILE B 208 N TRP B 81 SHEET 1 AA6 2 VAL B 112 LEU B 121 0 SHEET 2 AA6 2 GLN B 124 ASN B 132 -1 O VAL B 126 N TYR B 119 CISPEP 1 GLY A 67 PRO A 68 0 -0.05 CISPEP 2 THR A 181 PRO A 182 0 9.11 CISPEP 3 GLY B 67 PRO B 68 0 -2.09 CISPEP 4 THR B 181 PRO B 182 0 8.92 SITE 1 AC1 7 MET A 168 PHE A 170 TYR A 175 THR A 186 SITE 2 AC1 7 PHE A 202 ARG A 210 GLU A 213 SITE 1 AC2 9 PRO A 86 THR A 87 ILE A 88 VAL A 91 SITE 2 AC2 9 ARG A 173 PHE A 202 CYS A 203 HOH A 435 SITE 3 AC2 9 HOH A 501 SITE 1 AC3 6 GLY A 179 THR A 180 FMT A 305 HOH A 426 SITE 2 AC3 6 THR B 115 ASP B 116 SITE 1 AC4 6 TRP A 102 PHE A 122 LYS A 145 THR A 196 SITE 2 AC4 6 HOH A 429 HOH A 453 SITE 1 AC5 2 THR A 180 GOL A 303 SITE 1 AC6 3 LYS A 139 PHE A 159 HOH A 403 SITE 1 AC7 6 ARG A 101 THR A 105 HIS A 155 TYR A 189 SITE 2 AC7 6 THR A 191 TYR A 194 SITE 1 AC8 8 PRO B 86 THR B 87 ILE B 88 VAL B 91 SITE 2 AC8 8 ILE B 92 ARG B 173 PHE B 202 HOH B 420 SITE 1 AC9 6 MET B 168 PHE B 170 TYR B 175 THR B 186 SITE 2 AC9 6 ARG B 210 GLU B 213 SITE 1 AD1 10 TRP B 102 PHE B 122 LYS B 145 PRO B 148 SITE 2 AD1 10 ASN B 193 ASP B 195 THR B 196 HOH B 416 SITE 3 AD1 10 HOH B 436 HOH B 453 SITE 1 AD2 7 THR B 87 ILE B 88 THR B 185 THR B 186 SITE 2 AD2 7 HOH B 411 HOH B 476 HOH B 508 SITE 1 AD3 12 ILE B 82 THR B 105 ASP B 142 SER B 144 SITE 2 AD3 12 HIS B 155 VAL B 167 LYS B 169 TYR B 189 SITE 3 AD3 12 THR B 191 TYR B 194 HOH B 401 HOH B 498 CRYST1 134.816 30.444 86.217 90.00 124.05 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007418 0.000000 0.005013 0.00000 SCALE2 0.000000 0.032847 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013999 0.00000