HEADER HYDROLASE 29-JUN-15 5CA8 TITLE STRUCTURES OF THE YEAST DYNAMIN-LIKE GTPASE SEY1P IN COMPLEX WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SEY1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-692; COMPND 5 EC: 3.6.5.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ALBICANS (STRAIN SC5314 / ATCC MYA- SOURCE 3 2876); SOURCE 4 ORGANISM_COMMON: YEAST; SOURCE 5 ORGANISM_TAXID: 237561; SOURCE 6 STRAIN: SC5314 / ATCC MYA-2876; SOURCE 7 GENE: SEY1, NAG6, CAO19.2151, CAO19.9698; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ER, HOMO-FUSION, DYNAMIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.YAN REVDAT 5 06-NOV-24 5CA8 1 REMARK REVDAT 4 08-NOV-23 5CA8 1 LINK REVDAT 3 19-FEB-20 5CA8 1 JRNL REMARK REVDAT 2 07-OCT-15 5CA8 1 JRNL REVDAT 1 16-SEP-15 5CA8 0 JRNL AUTH L.YAN,S.SUN,W.WANG,J.SHI,X.HU,S.WANG,D.SU,Z.RAO,J.HU,Z.LOU JRNL TITL STRUCTURES OF THE YEAST DYNAMIN-LIKE GTPASE SEY1P PROVIDE JRNL TITL 2 INSIGHT INTO HOMOTYPIC ER FUSION JRNL REF J.CELL BIOL. V. 210 961 2015 JRNL REFN ESSN 1540-8140 JRNL PMID 26370501 JRNL DOI 10.1083/JCB.201502078 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 40796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3702 - 5.6691 1.00 2753 148 0.2466 0.2844 REMARK 3 2 5.6691 - 4.5010 0.99 2644 138 0.2028 0.2755 REMARK 3 3 4.5010 - 3.9324 0.99 2596 131 0.1929 0.2601 REMARK 3 4 3.9324 - 3.5730 0.98 2582 147 0.2077 0.2635 REMARK 3 5 3.5730 - 3.3169 0.99 2572 146 0.2158 0.2838 REMARK 3 6 3.3169 - 3.1214 0.99 2577 122 0.2410 0.2586 REMARK 3 7 3.1214 - 2.9651 0.98 2598 115 0.2364 0.2993 REMARK 3 8 2.9651 - 2.8361 0.98 2575 146 0.2420 0.2989 REMARK 3 9 2.8361 - 2.7269 0.98 2523 108 0.2480 0.3057 REMARK 3 10 2.7269 - 2.6328 0.98 2568 145 0.2515 0.3092 REMARK 3 11 2.6328 - 2.5505 0.99 2536 146 0.2636 0.3122 REMARK 3 12 2.5505 - 2.4776 0.99 2592 128 0.2705 0.3195 REMARK 3 13 2.4776 - 2.4124 0.98 2519 152 0.2955 0.3364 REMARK 3 14 2.4124 - 2.3535 0.99 2588 128 0.3040 0.3495 REMARK 3 15 2.3535 - 2.3000 0.99 2524 149 0.3461 0.3778 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5288 REMARK 3 ANGLE : 1.514 7150 REMARK 3 CHIRALITY : 0.063 810 REMARK 3 PLANARITY : 0.007 913 REMARK 3 DIHEDRAL : 18.200 1945 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 36.9668 7.1418 6.4301 REMARK 3 T TENSOR REMARK 3 T11: 0.4719 T22: 0.6169 REMARK 3 T33: 0.5813 T12: 0.0622 REMARK 3 T13: -0.1058 T23: 0.0362 REMARK 3 L TENSOR REMARK 3 L11: 0.7904 L22: 0.0296 REMARK 3 L33: 0.5309 L12: -0.3542 REMARK 3 L13: 0.8358 L23: -0.2905 REMARK 3 S TENSOR REMARK 3 S11: 0.0525 S12: -0.1114 S13: -0.0856 REMARK 3 S21: -0.0884 S22: 0.0221 S23: 0.0445 REMARK 3 S31: 0.0547 S32: -0.2048 S33: -0.0237 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CA8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211285. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40802 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 2.990 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CA9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM TRIS PH 8.5, 160 MM POTASSIUM REMARK 280 SODIUM TARTRATE TETRAHYDRATE, 4 MM GDP, 21% W/V PEG3350, REMARK 280 EVAPORATION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 114.06000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.81000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 114.06000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.81000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 801 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 GLU A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 LEU A 8 REMARK 465 SER A 9 REMARK 465 HIS A 10 REMARK 465 THR A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 PHE A 17 REMARK 465 VAL A 18 REMARK 465 PRO A 19 REMARK 465 VAL A 20 REMARK 465 ASP A 21 REMARK 465 GLN A 22 REMARK 465 ARG A 23 REMARK 465 GLN A 24 REMARK 465 LEU A 25 REMARK 465 GLN A 26 REMARK 465 ASP A 87 REMARK 465 GLU A 88 REMARK 465 LEU A 89 REMARK 465 ASN A 90 REMARK 465 ARG A 91 REMARK 465 GLN A 92 REMARK 465 GLN A 93 REMARK 465 THR A 94 REMARK 465 THR A 95 REMARK 465 LYS A 96 REMARK 465 GLY A 129 REMARK 465 ARG A 130 REMARK 465 GLU A 131 REMARK 465 ARG A 132 REMARK 465 GLY A 133 REMARK 465 GLY A 642 REMARK 465 GLY A 643 REMARK 465 TYR A 644 REMARK 465 ASP A 645 REMARK 465 ASP A 646 REMARK 465 SER A 647 REMARK 465 ASP A 648 REMARK 465 ASP A 649 REMARK 465 GLU A 650 REMARK 465 GLU A 651 REMARK 465 GLN A 688 REMARK 465 HIS A 689 REMARK 465 ILE A 690 REMARK 465 THR A 691 REMARK 465 GLN A 692 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 163 CD2 LEU A 164 1.60 REMARK 500 O TYR A 165 O ALA A 168 1.62 REMARK 500 OD1 ASN A 57 OG SER A 117 1.68 REMARK 500 OE1 GLN A 161 N ALA A 168 1.76 REMARK 500 NE2 GLN A 161 CA GLY A 167 1.99 REMARK 500 N ALA A 429 O GLY A 531 2.00 REMARK 500 O TYR A 165 N GLY A 167 2.03 REMARK 500 NE2 GLN A 161 N GLY A 167 2.04 REMARK 500 CD1 LEU A 164 NE2 GLN A 166 2.05 REMARK 500 O GLU A 159 N GLN A 161 2.05 REMARK 500 O GLU A 159 CG1 VAL A 162 2.05 REMARK 500 O TRP A 227 NZ LYS A 232 2.08 REMARK 500 NE2 GLN A 303 O HOH A 802 2.13 REMARK 500 ND2 ASN A 193 O HOH A 803 2.15 REMARK 500 O GLU A 159 N VAL A 162 2.16 REMARK 500 OE2 GLU A 597 OH TYR A 679 2.19 REMARK 500 C SER A 535 N THR A 537 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLN A 166 OE1 GLN A 166 2656 1.45 REMARK 500 CB GLN A 166 CB GLN A 166 2656 2.16 REMARK 500 OD2 ASP A 427 NZ LYS A 433 2555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 158 CB - CA - C ANGL. DEV. = 16.2 DEGREES REMARK 500 THR A 160 N - CA - C ANGL. DEV. = -20.0 DEGREES REMARK 500 ARG A 204 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ALA A 429 CB - CA - C ANGL. DEV. = 12.5 DEGREES REMARK 500 GLN A 518 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 GLU A 524 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 52 -4.42 -54.41 REMARK 500 ASN A 82 31.19 78.91 REMARK 500 GLU A 159 -73.61 -76.54 REMARK 500 LEU A 164 133.98 175.77 REMARK 500 GLN A 166 -40.66 0.15 REMARK 500 ASN A 277 62.54 24.08 REMARK 500 PHE A 343 42.80 -97.15 REMARK 500 LYS A 344 21.44 -149.32 REMARK 500 ALA A 348 -71.17 -69.19 REMARK 500 PRO A 350 94.07 -63.98 REMARK 500 ASN A 378 131.76 -37.11 REMARK 500 LEU A 423 32.05 -82.39 REMARK 500 LYS A 424 48.58 14.66 REMARK 500 ASP A 427 77.28 32.28 REMARK 500 GLN A 453 54.85 29.16 REMARK 500 LYS A 525 52.99 -98.85 REMARK 500 THR A 534 -125.46 -80.56 REMARK 500 SER A 535 48.16 150.56 REMARK 500 SER A 536 -28.45 -2.33 REMARK 500 PHE A 548 -72.68 -78.04 REMARK 500 LYS A 549 -28.51 -37.48 REMARK 500 ASP A 630 98.72 -66.41 REMARK 500 ILE A 631 -166.99 -78.43 REMARK 500 PHE A 632 6.29 57.41 REMARK 500 ARG A 637 -73.48 -84.05 REMARK 500 HIS A 653 173.42 -27.05 REMARK 500 THR A 682 4.33 -63.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 167 ALA A 168 144.98 REMARK 500 PHE A 343 LYS A 344 144.01 REMARK 500 LYS A 344 GLU A 345 132.62 REMARK 500 LYS A 545 PHE A 546 128.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 933 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A 934 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH A 935 DISTANCE = 8.05 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 72 OG REMARK 620 2 GLU A 125 OE2 153.7 REMARK 620 3 GDP A 702 O3B 68.4 86.3 REMARK 620 4 HOH A 829 O 77.7 127.7 134.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CA9 RELATED DB: PDB REMARK 900 RELATED ID: 5CB2 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 1. SEQUENCE CONFLICTS D270G, A337T AND I479V ARE BASED ON REMARK 999 BAB43823.1 ACCORDING TO DATABASE Q9C0L9 (SEY1_CANAL). 2. THE CODON REMARK 999 CUG (MRNA CUG CORRESPONDS TO CTG IN DNA) WILL ENCODE SER IN CANDIDA REMARK 999 ALBICANS BUT LEU IN ESCHERICHIA COLI. SO 89S,221S,665S IN CANDIDA REMARK 999 ALBICANS SEY1P(BAB43817) WILL BE TRANSLATED INTO LEU IN ESCHERICHIA REMARK 999 COLI BL21. DBREF 5CA8 A 1 692 UNP Q9C0L9 SEY1_CANAL 1 692 SEQADV 5CA8 LEU A 89 UNP Q9C0L9 SER 89 SEE SEQUENCE DETAILS SEQADV 5CA8 LEU A 221 UNP Q9C0L9 SER 221 SEE SEQUENCE DETAILS SEQADV 5CA8 GLY A 270 UNP Q9C0L9 ASP 270 SEE SEQUENCE DETAILS SEQADV 5CA8 THR A 337 UNP Q9C0L9 ALA 337 SEE SEQUENCE DETAILS SEQADV 5CA8 VAL A 479 UNP Q9C0L9 ILE 479 SEE SEQUENCE DETAILS SEQADV 5CA8 LEU A 665 UNP Q9C0L9 SER 665 SEE SEQUENCE DETAILS SEQRES 1 A 692 MET GLU LEU SER GLU GLY GLU LEU SER HIS THR SER SER SEQRES 2 A 692 SER SER SER PHE VAL PRO VAL ASP GLN ARG GLN LEU GLN SEQRES 3 A 692 ASP ALA ILE GLN ILE ILE ASP GLU ASN LYS HIS PHE ASN SEQRES 4 A 692 THR GLY ILE LEU ASP TYR ILE ASN LYS THR SER PRO ALA SEQRES 5 A 692 ASP VAL GLY ASN ASN TYR HIS ILE ILE SER VAL PHE GLY SEQRES 6 A 692 SER GLN SER THR GLY LYS SER THR LEU LEU ASN ARG LEU SEQRES 7 A 692 PHE ASN THR ASN PHE ASP VAL MET ASP GLU LEU ASN ARG SEQRES 8 A 692 GLN GLN THR THR LYS GLY ILE TRP LEU ALA TYR SER PRO SEQRES 9 A 692 VAL VAL SER THR THR LEU GLY HIS THR THR SER LYS SER SEQRES 10 A 692 ASN ILE LEU VAL MET ASP VAL GLU GLY THR ASP GLY ARG SEQRES 11 A 692 GLU ARG GLY GLU ASP GLN ASP PHE GLU ARG LYS ALA ALA SEQRES 12 A 692 LEU PHE ALA LEU SER THR SER GLU VAL LEU ILE ILE ASN SEQRES 13 A 692 ILE TRP GLU THR GLN VAL GLY LEU TYR GLN GLY ALA ASN SEQRES 14 A 692 MET GLY LEU LEU LYS THR VAL PHE GLU VAL ASN LEU SER SEQRES 15 A 692 LEU PHE GLY LYS SER LYS LEU GLU THR HIS ASN ASP HIS SEQRES 16 A 692 LYS VAL LEU LEU LEU ILE VAL ILE ARG ASP HIS VAL GLY SEQRES 17 A 692 VAL THR PRO VAL GLU SER LEU ALA LYS THR PHE THR LEU SEQRES 18 A 692 ASP LEU GLN ASN MET TRP SER SER LEU ALA LYS PRO ALA SEQRES 19 A 692 GLU LEU GLU HIS LEU GLN PHE ALA ASP PHE PHE ASP VAL SEQRES 20 A 692 THR PHE HIS ALA LEU ASN HIS LYS VAL LEU GLN PRO LYS SEQRES 21 A 692 GLU PHE GLY GLU GLY ILE ASN ARG LEU GLY ASP ARG LEU SEQRES 22 A 692 VAL VAL SER ASN GLU LEU PHE LYS PRO GLU TYR HIS HIS SEQRES 23 A 692 ASP VAL PRO ILE ASP GLY TRP THR MET TYR ALA GLU ARG SEQRES 24 A 692 CYS TRP GLU GLN ILE GLU THR ASN LYS ASP LEU ASP LEU SEQRES 25 A 692 PRO THR GLN GLN ILE LEU VAL ALA GLN PHE LYS CYS ASP SEQRES 26 A 692 GLU ILE VAL GLU SER VAL PHE GLN GLU PHE LEU THR LYS SEQRES 27 A 692 TYR GLN HIS HIS PHE LYS GLU VAL ASP ALA ALA PRO ASP SEQRES 28 A 692 PHE GLU GLU LEU GLY ALA LEU PHE ALA ASP LEU ARG GLN SEQRES 29 A 692 ASP ALA PHE GLU ASP TYR ASP ALA SER ALA SER ARG TYR SEQRES 30 A 692 ASN LYS ALA VAL TYR GLU GLN LYS ARG LYS LYS LEU ARG SEQRES 31 A 692 TRP LEU ILE ASN ASP LYS LEU LYS GLU VAL PHE ASP VAL SEQRES 32 A 692 HIS ALA LYS ASN LEU CYS ASN THR LEU LEU GLU LYS PHE SEQRES 33 A 692 GLU LYS ASP LEU VAL ALA LEU LYS GLY LYS ASP PHE ALA SEQRES 34 A 692 VAL ASN VAL LYS THR LEU SER THR LYS LEU VAL GLU ASP SEQRES 35 A 692 VAL ASN PHE GLN VAL SER LEU MET SER LEU GLN GLY ASP SEQRES 36 A 692 LEU SER LEU ASP GLU ILE ILE LEU ALA LEU THR LYS ASP SEQRES 37 A 692 ILE ASP ALA ILE VAL ALA LYS GLN GLN VAL VAL GLU LEU SEQRES 38 A 692 ASN SER ILE VAL ASN LYS SER VAL LYS LYS LEU SER ALA SEQRES 39 A 692 SER LEU SER LYS SER ILE GLN PHE GLU LEU GLY ASP PRO SEQRES 40 A 692 ASN GLU GLU THR TRP ASP ASN VAL LEU GLN GLN PHE LYS SEQRES 41 A 692 GLY VAL TYR GLU LYS PHE GLY GLY ASP PHE GLY LEU GLY SEQRES 42 A 692 THR SER SER THR GLN ASN GLN GLN ALA ILE GLU LYS PHE SEQRES 43 A 692 LYS PHE LYS SER TRP CYS GLN PHE TYR ASP VAL THR HIS SEQRES 44 A 692 LYS LEU ILE SER ARG GLU LYS LEU LEU ALA LEU LEU GLN SEQRES 45 A 692 ASP ARG PHE ASP ASP LYS PHE ARG TYR ASP GLU ASN GLY SEQRES 46 A 692 LEU PRO LYS LEU TYR LEU ASN GLU GLN ASP LEU GLU LYS SEQRES 47 A 692 THR PHE ALA VAL ALA LYS GLN HIS ALA LEU GLN VAL LEU SEQRES 48 A 692 PRO ILE LEU THR PHE ALA LYS LEU ALA ASP GLY SER GLU SEQRES 49 A 692 ILE VAL PRO ASP TYR ASP ILE PHE ASP SER LYS LEU ARG SEQRES 50 A 692 GLU GLN PHE LEU GLY GLY TYR ASP ASP SER ASP ASP GLU SEQRES 51 A 692 GLU ASP HIS CYS PHE ALA GLU ILE ILE THR GLU GLN GLU SEQRES 52 A 692 LYS LEU GLU VAL LEU ALA LYS PHE LYS LYS GLU VAL ASP SEQRES 53 A 692 ALA LYS TYR ILE GLU THR LYS ARG SER ILE VAL GLN HIS SEQRES 54 A 692 ILE THR GLN HET MG A 701 1 HET GDP A 702 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 HOH *135(H2 O) HELIX 1 AA1 GLY A 41 SER A 50 1 10 HELIX 2 AA2 GLY A 70 ASN A 80 1 11 HELIX 3 AA3 ASP A 135 SER A 150 1 16 HELIX 4 AA4 LEU A 164 ALA A 168 5 5 HELIX 5 AA5 ASN A 169 HIS A 192 1 24 HELIX 6 AA6 PRO A 211 LEU A 230 1 20 HELIX 7 AA7 PRO A 233 GLU A 237 5 5 HELIX 8 AA8 GLN A 240 PHE A 244 1 5 HELIX 9 AA9 GLN A 258 VAL A 274 1 17 HELIX 10 AB1 LYS A 281 HIS A 285 5 5 HELIX 11 AB2 PRO A 289 ASP A 291 5 3 HELIX 12 AB3 GLY A 292 THR A 306 1 15 HELIX 13 AB4 ASP A 311 LYS A 344 1 34 HELIX 14 AB5 ALA A 357 SER A 375 1 19 HELIX 15 AB6 ASN A 378 LEU A 397 1 20 HELIX 16 AB7 LEU A 397 LEU A 423 1 27 HELIX 17 AB8 ASP A 427 VAL A 432 1 6 HELIX 18 AB9 VAL A 432 LEU A 449 1 18 HELIX 19 AC1 LEU A 458 ALA A 471 1 14 HELIX 20 AC2 ILE A 472 GLY A 505 1 34 HELIX 21 AC3 GLU A 510 GLU A 524 1 15 HELIX 22 AC4 LYS A 545 ILE A 562 1 18 HELIX 23 AC5 SER A 563 ARG A 580 1 18 HELIX 24 AC6 ASN A 592 GLN A 609 1 18 HELIX 25 AC7 VAL A 610 THR A 615 1 6 HELIX 26 AC8 SER A 634 GLN A 639 1 6 HELIX 27 AC9 THR A 660 SER A 685 1 26 SHEET 1 AA1 7 ILE A 29 ILE A 32 0 SHEET 2 AA1 7 ILE A 98 TYR A 102 -1 O LEU A 100 N ILE A 29 SHEET 3 AA1 7 ASN A 118 GLU A 125 -1 O ASP A 123 N TRP A 99 SHEET 4 AA1 7 TYR A 58 GLY A 65 1 N HIS A 59 O LEU A 120 SHEET 5 AA1 7 VAL A 152 TRP A 158 1 O ILE A 154 N SER A 62 SHEET 6 AA1 7 VAL A 197 HIS A 206 1 O ARG A 204 N ILE A 157 SHEET 7 AA1 7 PHE A 245 ASN A 253 1 O ASP A 246 N LEU A 199 SHEET 1 AA2 2 VAL A 106 THR A 108 0 SHEET 2 AA2 2 GLY A 111 THR A 113 -1 O THR A 113 N VAL A 106 LINK O SER A 535 N THR A 537 1555 1555 1.34 LINK OG SER A 72 MG MG A 701 1555 1555 2.35 LINK OE2 GLU A 125 MG MG A 701 1555 1555 2.83 LINK MG MG A 701 O3B GDP A 702 1555 1555 2.75 LINK MG MG A 701 O HOH A 829 1555 1555 2.04 CISPEP 1 GLU A 134 ASP A 135 0 -3.27 SITE 1 AC1 5 SER A 72 ASP A 123 GLU A 125 GDP A 702 SITE 2 AC1 5 HOH A 829 SITE 1 AC2 16 SER A 68 THR A 69 GLY A 70 LYS A 71 SITE 2 AC2 16 SER A 72 THR A 73 VAL A 85 MET A 86 SITE 3 AC2 16 GLU A 125 TRP A 158 ARG A 204 ASP A 205 SITE 4 AC2 16 HIS A 254 LYS A 255 MG A 701 HOH A 814 CRYST1 228.120 43.620 97.560 90.00 108.12 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004384 0.000000 0.001434 0.00000 SCALE2 0.000000 0.022925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010785 0.00000