HEADER PLANT PROTEIN 29-JUN-15 5CAD TITLE CRYSTAL STRUCTURE OF THE VICILIN FROM SOLANUM MELONGENA REVEALED TITLE 2 EXISTENCE OF DIFFERENT ANIONIC LIGANDS IN STRUCTURALLY SIMILAR TITLE 3 POCKETS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SM80.1 VICILIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM MELONGENA; SOURCE 3 ORGANISM_COMMON: EGGPLANT; SOURCE 4 ORGANISM_TAXID: 4111; SOURCE 5 TISSUE: SEED KEYWDS SOLANACEAE; SOLANUM MELONGENA;7S VICILIN; SM80.1, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.JAIN,A.KUMAR,D.M.SALUNKE REVDAT 2 20-MAR-24 5CAD 1 REMARK LINK REVDAT 1 06-APR-16 5CAD 0 JRNL AUTH A.JAIN,A.KUMAR,D.M.SALUNKE JRNL TITL CRYSTAL STRUCTURE OF THE VICILIN FROM SOLANUM MELONGENA JRNL TITL 2 REVEALS EXISTENCE OF DIFFERENT ANIONIC LIGANDS IN JRNL TITL 3 STRUCTURALLY SIMILAR POCKETS JRNL REF SCI REP V. 6 23600 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27004988 JRNL DOI 10.1038/SREP23600 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 23.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 70452 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3556 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2912 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.12200 REMARK 3 B22 (A**2) : -3.12200 REMARK 3 B33 (A**2) : 6.24300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 59.25 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : CNS_TOPPAR:CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : CNSACT.PARAM REMARK 3 PARAMETER FILE 7 : CNSPCA.PARAM REMARK 3 PARAMETER FILE 8 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 TOPOLOGY FILE 8 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CAD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211266. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70495 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 22.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX 1.8.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HEXAGONAL CRYSTAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM TRIS-CL, 1.5 M SODIUM MALONATE, REMARK 280 10% PEG 3350, PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 59.66500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.44760 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 52.73000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 59.66500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 34.44760 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 52.73000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 59.66500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 34.44760 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 52.73000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 59.66500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 34.44760 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.73000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 59.66500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 34.44760 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 52.73000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 59.66500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 34.44760 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.73000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 68.89521 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 105.46000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 68.89521 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 105.46000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 68.89521 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 105.46000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 68.89521 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 105.46000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 68.89521 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 105.46000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 68.89521 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 105.46000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 80 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 1 REMARK 465 GLN A 2 REMARK 465 ARG A 3 REMARK 465 GLU A 4 REMARK 465 UNK A 288 REMARK 465 UNK A 289 REMARK 465 UNK A 290 REMARK 465 UNK A 291 REMARK 465 UNK A 292 REMARK 465 UNK A 293 REMARK 465 UNK A 294 REMARK 465 UNK A 295 REMARK 465 UNK A 296 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 5 CB CG CD OE1 NE2 REMARK 470 GLN A 6 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 284 O HOH A 501 2.00 REMARK 500 NE2 HIS A 320 O HOH A 501 2.00 REMARK 500 O HOH A 654 O HOH A 668 2.15 REMARK 500 O HOH A 603 O HOH A 665 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ALA A 191 O GLY A 194 17555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 6 N - CA - C ANGL. DEV. = -20.4 DEGREES REMARK 500 GLY A 194 N - CA - C ANGL. DEV. = 19.8 DEGREES REMARK 500 ALA A 198 N - CA - C ANGL. DEV. = 19.9 DEGREES REMARK 500 ALA A 203 N - CA - C ANGL. DEV. = -21.8 DEGREES REMARK 500 ALA A 204 N - CA - C ANGL. DEV. = -25.6 DEGREES REMARK 500 ALA A 205 N - CA - C ANGL. DEV. = 24.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 68 33.99 -99.88 REMARK 500 ASN A 117 -34.36 -133.73 REMARK 500 ASN A 130 -127.31 -102.50 REMARK 500 ALA A 193 -70.73 -70.22 REMARK 500 HIS A 195 2.33 -166.24 REMARK 500 ALA A 203 -161.95 141.29 REMARK 500 ALA A 204 70.40 -113.50 REMARK 500 ALA A 206 -92.69 -134.47 REMARK 500 ARG A 207 -70.16 -63.70 REMARK 500 ARG A 264 -13.76 -142.23 REMARK 500 ALA A 328 -155.43 70.40 REMARK 500 TYR A 386 -59.28 64.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 25 O REMARK 620 2 GLY A 28 O 87.3 REMARK 620 3 HOH A 671 O 82.7 101.2 REMARK 620 4 HOH A 671 O 90.9 173.1 85.1 REMARK 620 5 HOH A 688 O 90.9 85.9 170.1 87.5 REMARK 620 6 HOH A 737 O 168.4 96.7 85.8 86.4 100.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PCA A 403 DBREF 5CAD A 1 392 PDB 5CAD 5CAD 1 392 SEQRES 1 A 392 PRO GLN ARG GLU GLN GLN GLU SER ASN VAL PRO TYR LEU SEQRES 2 A 392 PHE LYS VAL VAL ARG PHE LYS SER ARG PHE ARG ALA SER SEQRES 3 A 392 HIS GLY ASP PHE ARG ILE LEU PRO LYS PHE VAL GLN ARG SEQRES 4 A 392 SER GLN LEU LEU ARG GLY ILE GLU LYS PHE ARG VAL SER SEQRES 5 A 392 VAL ILE GLU LEU GLU PRO GLN SER PHE MET LEU PRO HIS SEQRES 6 A 392 HIS CYS ASP GLY GLU ALA ILE PHE VAL VAL VAL LYS GLY SEQRES 7 A 392 GLN GLY VAL ILE VAL ILE ALA GLU GLN ASP LYS ASN ASN SEQRES 8 A 392 SER PHE ASN LEU GLN LYS GLY ASP VAL LEU ARG LEU HIS SEQRES 9 A 392 GLY GLY SER THR ILE PHE LEU LEU ASN ALA ASP ALA ASN SEQRES 10 A 392 GLU LYS PHE LYS VAL TYR VAL LEU ALA LYS SER VAL ASN SEQRES 11 A 392 ALA PRO GLY GLU VAL GLN GLU TYR PHE SER ALA GLY GLY SEQRES 12 A 392 GLN ASN PRO GLU SER PHE TYR ARG ALA PHE VAL VAL ASP SEQRES 13 A 392 ILE LEU GLU SER ALA PHE ASN VAL LYS ARG ASP LYS ILE SEQRES 14 A 392 GLU ARG LEU PHE SER GLN GLN LYS ALA GLY ALA ILE ILE SEQRES 15 A 392 SER ALA SER GLY ALA GLN ALA ALA ALA LYS ALA GLY HIS SEQRES 16 A 392 ALA SER ALA ALA GLY GLY ALA ALA ALA ALA ALA ARG VAL SEQRES 17 A 392 ALA GLY PRO PHE ASN LEU MET LYS GLU VAL PRO GLU PHE SEQRES 18 A 392 GLY SER ALA PHE GLY GLN PHE GLN GLU ALA ALA PRO GLN SEQRES 19 A 392 ARG HIS VAL GLN LEU ARG ASP LEU ASP ALA ALA VAL ALA SEQRES 20 A 392 PHE MET ASN ILE ASN SER GLY GLY MET VAL LEU PRO TYR SEQRES 21 A 392 TYR ASN SER ARG SER THR ARG VAL VAL ALA VAL VAL GLU SEQRES 22 A 392 GLY ASN ALA ARG PHE GLU MET ALA CYS PRO HIS LEU GLY SEQRES 23 A 392 ALA UNK UNK UNK UNK UNK UNK UNK UNK UNK ALA VAL VAL SEQRES 24 A 392 HIS TYR ALA LYS VAL ARG GLY ASN LEU ASN VAL GLY ASP SEQRES 25 A 392 VAL LEU VAL ILE PRO ALA GLY HIS PRO ILE THR PHE VAL SEQRES 26 A 392 ALA VAL ALA GLY SER ASP PHE ARG VAL VAL GLY PHE GLY SEQRES 27 A 392 ILE ASP ALA GLU HIS ASN LYS LYS ASN PHE LEU ALA GLY SEQRES 28 A 392 LYS GLN ASN ILE TRP ARG ASN ILE ASP ARG GLU ALA LYS SEQRES 29 A 392 GLU LEU SER PHE ASP MET PRO GLY ALA GLU VAL GLU GLU SEQRES 30 A 392 ILE PHE ALA LYS GLN ILE LEU SER TYR PHE VAL ALA GLY SEQRES 31 A 392 PRO ALA HET MG A 401 1 HET ACT A 402 4 HET PCA A 403 9 HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION HETNAM PCA PYROGLUTAMIC ACID FORMUL 2 MG MG 2+ FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 PCA C5 H7 N O3 FORMUL 5 HOH *256(H2 O) HELIX 1 AA1 GLN A 6 VAL A 10 5 5 HELIX 2 AA2 LYS A 15 PHE A 19 5 5 HELIX 3 AA3 SER A 40 GLU A 47 5 8 HELIX 4 AA4 SER A 148 PHE A 153 5 6 HELIX 5 AA5 VAL A 154 ASN A 163 1 10 HELIX 6 AA6 LYS A 165 PHE A 173 1 9 HELIX 7 AA7 SER A 185 GLY A 194 1 10 HELIX 8 AA8 HIS A 236 ARG A 240 5 5 HELIX 9 AA9 PRO A 283 ALA A 287 1 5 HELIX 10 AB1 ASN A 354 ILE A 359 5 6 HELIX 11 AB2 ASP A 360 ASP A 369 1 10 HELIX 12 AB3 PRO A 371 LYS A 381 1 11 SHEET 1 AA1 7 LEU A 13 PHE A 14 0 SHEET 2 AA1 7 VAL A 313 ILE A 316 -1 O VAL A 313 N PHE A 14 SHEET 3 AA1 7 THR A 266 GLU A 273 -1 N ARG A 267 O ILE A 316 SHEET 4 AA1 7 PHE A 332 ILE A 339 -1 O VAL A 335 N ALA A 270 SHEET 5 AA1 7 ALA A 244 ILE A 251 -1 N ALA A 247 O GLY A 336 SHEET 6 AA1 7 GLY A 226 ALA A 231 -1 N GLN A 229 O PHE A 248 SHEET 7 AA1 7 PHE A 221 SER A 223 -1 N SER A 223 O GLY A 226 SHEET 1 AA2 6 LYS A 20 SER A 21 0 SHEET 2 AA2 6 GLY A 28 ILE A 32 -1 O ILE A 32 N LYS A 20 SHEET 3 AA2 6 PHE A 49 LEU A 56 -1 O GLU A 55 N ASP A 29 SHEET 4 AA2 6 PHE A 120 SER A 128 -1 O VAL A 124 N SER A 52 SHEET 5 AA2 6 GLY A 69 LYS A 77 -1 N VAL A 74 O TYR A 123 SHEET 6 AA2 6 VAL A 100 LEU A 103 -1 O LEU A 101 N PHE A 73 SHEET 1 AA3 5 ASN A 90 GLN A 96 0 SHEET 2 AA3 5 GLN A 79 ALA A 85 -1 N ILE A 84 O ASN A 91 SHEET 3 AA3 5 THR A 108 ASN A 113 -1 O THR A 108 N ALA A 85 SHEET 4 AA3 5 SER A 60 CYS A 67 -1 N HIS A 65 O ILE A 109 SHEET 5 AA3 5 GLU A 137 PHE A 139 -1 O TYR A 138 N HIS A 66 SHEET 1 AA4 5 ASN A 90 GLN A 96 0 SHEET 2 AA4 5 GLN A 79 ALA A 85 -1 N ILE A 84 O ASN A 91 SHEET 3 AA4 5 THR A 108 ASN A 113 -1 O THR A 108 N ALA A 85 SHEET 4 AA4 5 SER A 60 CYS A 67 -1 N HIS A 65 O ILE A 109 SHEET 5 AA4 5 ILE A 181 SER A 183 -1 O ILE A 182 N PHE A 61 SHEET 1 AA5 5 ALA A 302 LEU A 308 0 SHEET 2 AA5 5 ASN A 275 CYS A 282 -1 N CYS A 282 O ALA A 302 SHEET 3 AA5 5 ILE A 322 VAL A 327 -1 O VAL A 325 N ARG A 277 SHEET 4 AA5 5 GLY A 255 ASN A 262 -1 N TYR A 260 O ILE A 322 SHEET 5 AA5 5 LYS A 346 PHE A 348 -1 O ASN A 347 N TYR A 261 SHEET 1 AA6 5 ALA A 302 LEU A 308 0 SHEET 2 AA6 5 ASN A 275 CYS A 282 -1 N CYS A 282 O ALA A 302 SHEET 3 AA6 5 ILE A 322 VAL A 327 -1 O VAL A 325 N ARG A 277 SHEET 4 AA6 5 GLY A 255 ASN A 262 -1 N TYR A 260 O ILE A 322 SHEET 5 AA6 5 PHE A 387 ALA A 389 -1 O VAL A 388 N MET A 256 LINK O ALA A 25 MG MG A 401 1555 1555 2.34 LINK O GLY A 28 MG MG A 401 1555 1555 2.36 LINK MG MG A 401 O HOH A 671 1555 1555 2.44 LINK MG MG A 401 O HOH A 671 1555 4556 2.48 LINK MG MG A 401 O HOH A 688 1555 1555 2.43 LINK MG MG A 401 O HOH A 737 1555 1555 2.39 CISPEP 1 ASN A 145 PRO A 146 0 -0.02 SITE 1 AC1 5 ALA A 25 GLY A 28 HOH A 671 HOH A 688 SITE 2 AC1 5 HOH A 737 SITE 1 AC2 5 PHE A 228 TYR A 260 ASN A 262 ARG A 267 SITE 2 AC2 5 LYS A 346 SITE 1 AC3 7 PHE A 30 HIS A 65 CYS A 67 ILE A 109 SITE 2 AC3 7 ALA A 126 VAL A 135 HOH A 730 CRYST1 119.330 119.330 158.190 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008380 0.004838 0.000000 0.00000 SCALE2 0.000000 0.009677 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006322 0.00000