HEADER CELL ADHESION 29-JUN-15 5CAG TITLE CRYSTAL STRUCTURE OF A PUTATIVE ADHESIN (BACOVA_02677) FROM TITLE 2 BACTEROIDES OVATUS ATCC 8483 AT 3.00 A RESOLUTION (PSI COMMUNITY TITLE 3 TARGET, NAKAYAMA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 411476; SOURCE 4 STRAIN: ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153; SOURCE 5 GENE: BACOVA_02677; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS ADHESIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, KEYWDS 2 JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG),K.NAKAYAMA REVDAT 3 22-APR-20 5CAG 1 JRNL REVDAT 2 24-JAN-18 5CAG 1 JRNL REMARK REVDAT 1 14-OCT-15 5CAG 0 JRNL AUTH Q.XU,M.SHOJI,S.SHIBATA,M.NAITO,K.SATO,M.A.ELSLIGER, JRNL AUTH 2 J.C.GRANT,H.L.AXELROD,H.J.CHIU,C.L.FARR,L.JAROSZEWSKI, JRNL AUTH 3 M.W.KNUTH,A.M.DEACON,A.GODZIK,S.A.LESLEY,M.A.CURTIS, JRNL AUTH 4 K.NAKAYAMA,I.A.WILSON JRNL TITL A DISTINCT TYPE OF PILUS FROM THE HUMAN MICROBIOME. JRNL REF CELL V. 165 690 2016 JRNL REFN ISSN 1097-4172 JRNL PMID 27062925 JRNL DOI 10.1016/J.CELL.2016.03.016 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 13097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.740 REMARK 3 FREE R VALUE TEST SET COUNT : 621 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.24 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2603 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2602 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2479 REMARK 3 BIN R VALUE (WORKING SET) : 0.2573 REMARK 3 BIN FREE R VALUE : 0.3201 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.76 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 124 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2194 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 81.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 107.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -17.19230 REMARK 3 B22 (A**2) : -17.19230 REMARK 3 B33 (A**2) : 34.38450 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.564 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2273 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3085 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1044 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 59 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 314 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2273 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 301 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2361 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.27 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.36 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.19 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|0 - 306} REMARK 3 ORIGIN FOR THE GROUP (A): 25.9473 60.0926 117.5830 REMARK 3 T TENSOR REMARK 3 T11: -0.2934 T22: -0.0645 REMARK 3 T33: -0.2589 T12: -0.0364 REMARK 3 T13: 0.1122 T23: 0.1096 REMARK 3 L TENSOR REMARK 3 L11: 1.6208 L22: 5.8348 REMARK 3 L33: 2.1467 L12: -0.9087 REMARK 3 L13: 0.1316 L23: -1.0216 REMARK 3 S TENSOR REMARK 3 S11: 0.0861 S12: -0.0604 S13: -0.1079 REMARK 3 S21: 0.1382 S22: -0.4737 S23: -0.3356 REMARK 3 S31: -0.0746 S32: 0.4254 S33: 0.3876 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. THE MAD PHASES WERE USED AS RESTRAINTS DURING REMARK 3 REFINEMENT. 3. HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. 4. ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORDS CONTAIN SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 5. THE SEQUENCE IS NUMBERED ACCORDING PATRIC DB ENTRY REMARK 3 VBIBACOVA42630_2252 WHICH CONTAINS ADDITIONAL N-TERM SIGNAL REMARK 3 SEQUENCE (NOT PRESENT IN UNIPROT ENTRY VBIBACOVA42630_2252). REMARK 4 REMARK 4 5CAG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9116,0.9794,0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : RHODIUM-COATED VERTICAL AND REMARK 200 HORIZONTAL FOCUSING MIRRORS; REMARK 200 LIQUID-NITROGEN COOLED DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JANUARY 10, 2014 REMARK 200 BUILT=20140307 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13098 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 49.195 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.491 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.37800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M LITHIUM SULFATE, 2.0000M REMARK 280 AMMONIUM SULFATE, 0.1M CAPS PH 10.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 144.69133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.34567 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.51850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.17283 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 180.86417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 144.69133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 72.34567 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.17283 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 108.51850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 180.86417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -256.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 49.19550 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 85.20911 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 253.20983 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 276 REMARK 465 GLY A 277 REMARK 465 THR A 278 REMARK 465 GLY A 279 REMARK 465 GLU A 280 REMARK 465 ASP A 281 REMARK 465 GLY A 282 REMARK 465 PRO A 307 REMARK 465 ASN A 308 REMARK 465 PRO A 309 REMARK 465 ASP A 310 REMARK 465 GLY A 311 REMARK 465 GLY A 312 REMARK 465 GLY A 313 REMARK 465 GLY A 314 REMARK 465 MSE A 315 REMARK 465 GLY A 316 REMARK 465 GLY A 317 REMARK 465 ASN A 318 REMARK 465 VAL A 319 REMARK 465 ASP A 320 REMARK 465 GLY A 321 REMARK 465 TRP A 322 REMARK 465 GLY A 323 REMARK 465 PRO A 324 REMARK 465 GLU A 325 REMARK 465 ASP A 326 REMARK 465 ASN A 327 REMARK 465 VAL A 328 REMARK 465 GLU A 329 REMARK 465 LEU A 330 REMARK 465 PRO A 331 REMARK 465 VAL A 332 REMARK 465 ASN A 333 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 30 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 62 CG OD1 OD2 REMARK 470 GLU A 242 CG CD OE1 OE2 REMARK 470 LYS A 283 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 94 -75.88 -74.32 REMARK 500 LYS A 224 131.91 -39.88 REMARK 500 ARG A 237 136.02 -39.53 REMARK 500 LYS A 243 48.37 -81.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-425227 RELATED DB: TARGETTRACK DBREF 5CAG A 17 333 UNP A7LXW1 A7LXW1_BACO1 1 317 SEQADV 5CAG GLY A 0 UNP A7LXW1 EXPRESSION TAG SEQRES 1 A 318 GLY MSE LEU THR GLY CYS SER ARG ARG ASP ILE LEU ASP SEQRES 2 A 318 ASP TYR PRO VAL SER GLY VAL ASP ILE LYS LEU ASP TRP SEQRES 3 A 318 ASP GLY VAL THR ASP GLN LEU PRO GLU GLY VAL ARG VAL SEQRES 4 A 318 ILE PHE TYR PRO LYS ASN GLY ASP GLY ARG LYS VAL ASP SEQRES 5 A 318 LYS TYR LEU SER VAL ARG GLY GLY GLU MSE LYS VAL PRO SEQRES 6 A 318 PRO GLY ARG TYR SER VAL VAL VAL TYR ASN TYR ASN THR SEQRES 7 A 318 GLU SER ILE ARG ILE ARG GLY GLU GLU SER TYR GLU THR SEQRES 8 A 318 ILE GLU ALA TYR THR GLY ASN CYS ASN GLY LEU GLY ILE SEQRES 9 A 318 GLU GLY THR GLU LYS MSE VAL TRP SER PRO ASP SER LEU SEQRES 10 A 318 TYR VAL LEU ASN ILE ASP GLU LEU LYS ILE GLU LYS SER SEQRES 11 A 318 GLU GLU VAL LEU ARG LEU ASP TRP LYS LEU GLU SER VAL SEQRES 12 A 318 VAL LYS LYS TYR SER PHE ALA VAL GLU ALA LYS GLY LEU SEQRES 13 A 318 GLU TYR VAL ALA THR VAL VAL GLY SER ILE ASP GLY LEU SEQRES 14 A 318 SER ASP CYS TYR CYS ILE GLY LYS GLY ARG GLY VAL CYS SEQRES 15 A 318 SER SER GLN PRO ILE TYR PHE GLU VAL LYS LYS GLY ASP SEQRES 16 A 318 ASN LYS VAL THR ALA PHE PHE THR ALA PHE LYS GLN VAL SEQRES 17 A 318 LYS GLU MSE THR MSE PRO THR ARG MSE SER THR SER GLU SEQRES 18 A 318 ARG GLU THR SER SER GLU LYS GLY ALA ILE ILE LEU ILE SEQRES 19 A 318 LEU LYS PHE ILE LYS THR ASP ASN THR VAL GLN GLU ALA SEQRES 20 A 318 THR ILE ASP VAL THR GLU ILE ILE GLY THR LEU GLU ASN SEQRES 21 A 318 ALA GLY THR GLY GLU ASP GLY LYS PRO THR PRO PRO PRO SEQRES 22 A 318 GLU ILE GLU LEU PRO PRO ASP ASP LYS ILE GLU VAL ASP SEQRES 23 A 318 LYS PRO GLU THR PRO PRO ASN PRO ASP GLY GLY GLY GLY SEQRES 24 A 318 MSE GLY GLY ASN VAL ASP GLY TRP GLY PRO GLU ASP ASN SEQRES 25 A 318 VAL GLU LEU PRO VAL ASN MODRES 5CAG MSE A 17 MET MODIFIED RESIDUE MODRES 5CAG MSE A 77 MET MODIFIED RESIDUE MODRES 5CAG MSE A 125 MET MODIFIED RESIDUE MODRES 5CAG MSE A 226 MET MODIFIED RESIDUE MODRES 5CAG MSE A 228 MET MODIFIED RESIDUE MODRES 5CAG MSE A 232 MET MODIFIED RESIDUE HET MSE A 17 8 HET MSE A 77 8 HET MSE A 125 8 HET MSE A 226 8 HET MSE A 228 8 HET MSE A 232 8 HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 10 HET SO4 A 409 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 SO4 9(O4 S 2-) HELIX 1 AA1 SER A 103 THR A 106 5 4 HELIX 2 AA2 GLY A 121 MSE A 125 5 5 HELIX 3 AA3 GLY A 170 GLU A 172 5 3 HELIX 4 AA4 ILE A 269 GLU A 274 1 6 HELIX 5 AA5 PRO A 293 LYS A 297 5 5 SHEET 1 AA1 3 GLY A 74 MSE A 77 0 SHEET 2 AA1 3 VAL A 35 ASP A 40 -1 N VAL A 35 O MSE A 77 SHEET 3 AA1 3 LEU A 149 LYS A 154 1 O LEU A 149 N ASP A 36 SHEET 1 AA2 5 VAL A 66 SER A 71 0 SHEET 2 AA2 5 GLY A 51 PRO A 58 -1 N VAL A 52 O LEU A 70 SHEET 3 AA2 5 GLY A 82 ASN A 90 -1 O SER A 85 N TYR A 57 SHEET 4 AA2 5 TYR A 133 ILE A 142 -1 O ILE A 137 N VAL A 86 SHEET 5 AA2 5 GLU A 156 SER A 157 -1 O GLU A 156 N VAL A 134 SHEET 1 AA3 4 ILE A 96 ARG A 99 0 SHEET 2 AA3 4 GLU A 108 THR A 111 -1 O TYR A 110 N ARG A 97 SHEET 3 AA3 4 CYS A 187 CYS A 189 -1 O TYR A 188 N ALA A 109 SHEET 4 AA3 4 ARG A 194 VAL A 196 -1 O ARG A 194 N CYS A 189 SHEET 1 AA4 7 VAL A 259 ASP A 265 0 SHEET 2 AA4 7 ILE A 247 LYS A 254 -1 N LEU A 248 O ILE A 264 SHEET 3 AA4 7 VAL A 174 ASP A 182 -1 N ALA A 175 O ILE A 253 SHEET 4 AA4 7 ILE A 202 LYS A 208 -1 O PHE A 204 N GLY A 179 SHEET 5 AA4 7 LYS A 212 PHE A 220 -1 O THR A 214 N LYS A 207 SHEET 6 AA4 7 VAL A 159 LYS A 169 -1 N TYR A 162 O PHE A 217 SHEET 7 AA4 7 GLU A 289 ILE A 290 1 O ILE A 290 N ALA A 165 SHEET 1 AA5 7 VAL A 259 ASP A 265 0 SHEET 2 AA5 7 ILE A 247 LYS A 254 -1 N LEU A 248 O ILE A 264 SHEET 3 AA5 7 VAL A 174 ASP A 182 -1 N ALA A 175 O ILE A 253 SHEET 4 AA5 7 ILE A 202 LYS A 208 -1 O PHE A 204 N GLY A 179 SHEET 5 AA5 7 LYS A 212 PHE A 220 -1 O THR A 214 N LYS A 207 SHEET 6 AA5 7 VAL A 159 LYS A 169 -1 N TYR A 162 O PHE A 217 SHEET 7 AA5 7 ILE A 298 GLU A 299 1 O ILE A 298 N LYS A 169 LINK C GLY A 0 N MSE A 17 1555 1555 1.35 LINK C MSE A 17 N LEU A 18 1555 1555 1.35 LINK C GLU A 76 N MSE A 77 1555 1555 1.34 LINK C MSE A 77 N LYS A 78 1555 1555 1.33 LINK C LYS A 124 N MSE A 125 1555 1555 1.35 LINK C MSE A 125 N VAL A 126 1555 1555 1.35 LINK C GLU A 225 N MSE A 226 1555 1555 1.37 LINK C MSE A 226 N THR A 227 1555 1555 1.34 LINK C THR A 227 N MSE A 228 1555 1555 1.36 LINK C MSE A 228 N PRO A 229 1555 1555 1.34 LINK C ARG A 231 N MSE A 232 1555 1555 1.35 LINK C MSE A 232 N SER A 233 1555 1555 1.34 SITE 1 AC1 3 ARG A 150 GLU A 236 ARG A 237 SITE 1 AC2 2 LYS A 68 LYS A 78 SITE 1 AC3 5 THR A 45 ASP A 46 GLN A 47 TYR A 133 SITE 2 AC3 5 LYS A 161 SITE 1 AC4 4 ARG A 194 ARG A 231 SER A 233 GLU A 238 SITE 1 AC5 3 SER A 233 THR A 234 SER A 235 SITE 1 AC6 4 ARG A 99 GLY A 100 GLU A 101 GLU A 102 SITE 1 AC7 2 ARG A 97 ASN A 115 SITE 1 AC8 3 SER A 95 ARG A 97 TRP A 127 SITE 1 AC9 4 GLY A 209 ASP A 210 ASN A 211 LYS A 212 CRYST1 98.391 98.391 217.037 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010164 0.005868 0.000000 0.00000 SCALE2 0.000000 0.011736 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004608 0.00000