HEADER RNA BINDING PROTEIN 03-JUL-15 5CD8 TITLE CRYSTAL STRUCTURE OF THE NTD OF DROSOPHILA OSKAR PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATERNAL EFFECT PROTEIN OSKAR; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: UNP RESIDUES 150-240; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: OSK, CG10901; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A-SUMO KEYWDS 3'-UTR, DIMERIZATION, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.YANG,M.HU,Z.YU,M.WANG,R.LEHMANN,R.M.XU REVDAT 4 08-NOV-23 5CD8 1 REMARK REVDAT 3 18-OCT-17 5CD8 1 JRNL REMARK REVDAT 2 30-SEP-15 5CD8 1 JRNL REVDAT 1 02-SEP-15 5CD8 0 JRNL AUTH N.YANG,Z.YU,M.HU,M.WANG,R.LEHMANN,R.M.XU JRNL TITL STRUCTURE OF DROSOPHILA OSKAR REVEALS A NOVEL RNA BINDING JRNL TITL 2 PROTEIN JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 11541 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26324911 JRNL DOI 10.1073/PNAS.1515568112 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.210 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 11253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4377 - 4.7622 0.99 2674 125 0.1799 0.2288 REMARK 3 2 4.7622 - 3.7808 1.00 2691 153 0.1668 0.2294 REMARK 3 3 3.7808 - 3.3031 0.99 2669 121 0.2201 0.2623 REMARK 3 4 3.3031 - 3.0012 1.00 2681 139 0.2462 0.3071 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 82.08 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.640 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 111.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.39600 REMARK 3 B22 (A**2) : 12.39600 REMARK 3 B33 (A**2) : -24.79200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3518 REMARK 3 ANGLE : 0.913 4762 REMARK 3 CHIRALITY : 0.068 551 REMARK 3 PLANARITY : 0.004 620 REMARK 3 DIHEDRAL : 15.553 1324 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): 32.8259 -28.8463 7.8417 REMARK 3 T TENSOR REMARK 3 T11: 0.4339 T22: 0.3162 REMARK 3 T33: 0.3194 T12: 0.2006 REMARK 3 T13: 0.0115 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 9.4929 L22: 9.2138 REMARK 3 L33: 10.0712 L12: 0.5990 REMARK 3 L13: 1.6522 L23: 2.6352 REMARK 3 S TENSOR REMARK 3 S11: -0.0213 S12: 0.2560 S13: -0.3490 REMARK 3 S21: 0.3965 S22: 0.0228 S23: -0.3443 REMARK 3 S31: 0.7280 S32: 0.2044 S33: 0.1258 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): 31.5251 -23.5440 -13.9408 REMARK 3 T TENSOR REMARK 3 T11: 0.2941 T22: 0.5866 REMARK 3 T33: 0.3312 T12: -0.0661 REMARK 3 T13: 0.0336 T23: 0.1024 REMARK 3 L TENSOR REMARK 3 L11: 12.2982 L22: 8.7348 REMARK 3 L33: 11.8640 L12: 0.1993 REMARK 3 L13: -0.0906 L23: -7.2451 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: -0.2299 S13: 0.1412 REMARK 3 S21: 0.3283 S22: 0.5515 S23: 0.6339 REMARK 3 S31: 0.8782 S32: -0.2762 S33: -0.2858 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): 32.1758 -47.5495 -29.3003 REMARK 3 T TENSOR REMARK 3 T11: 1.0726 T22: 0.8807 REMARK 3 T33: 0.4968 T12: -0.3739 REMARK 3 T13: -0.0202 T23: 0.0731 REMARK 3 L TENSOR REMARK 3 L11: 8.3955 L22: 8.2754 REMARK 3 L33: 9.7321 L12: -4.5859 REMARK 3 L13: 1.3018 L23: 0.7067 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: -0.2358 S13: 0.3960 REMARK 3 S21: -0.7320 S22: 0.4046 S23: -0.0312 REMARK 3 S31: -0.9352 S32: 0.4492 S33: -0.3339 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' REMARK 3 ORIGIN FOR THE GROUP (A): 31.7834 -53.1754 -7.1895 REMARK 3 T TENSOR REMARK 3 T11: 0.9728 T22: 0.9742 REMARK 3 T33: 0.5596 T12: 0.2907 REMARK 3 T13: 0.0070 T23: 0.1898 REMARK 3 L TENSOR REMARK 3 L11: 7.7842 L22: 8.9892 REMARK 3 L33: 8.9520 L12: 0.4573 REMARK 3 L13: 0.6844 L23: 3.5111 REMARK 3 S TENSOR REMARK 3 S11: 0.0588 S12: -0.8653 S13: 0.1648 REMARK 3 S21: -0.1681 S22: 0.9250 S23: 0.9360 REMARK 3 S31: -0.2500 S32: -1.1269 S33: -0.8618 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' REMARK 3 ORIGIN FOR THE GROUP (A): 9.8237 -36.7942 18.2354 REMARK 3 T TENSOR REMARK 3 T11: 0.9420 T22: 1.1955 REMARK 3 T33: 0.7333 T12: -0.1688 REMARK 3 T13: -0.0532 T23: 0.2073 REMARK 3 L TENSOR REMARK 3 L11: 6.2003 L22: 8.1039 REMARK 3 L33: 6.2795 L12: 1.6367 REMARK 3 L13: -1.7940 L23: 1.4344 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: -0.4618 S13: -0.7449 REMARK 3 S21: 0.1842 S22: 0.5136 S23: 0.5798 REMARK 3 S31: 0.1350 S32: 0.5177 S33: -0.4032 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'F' REMARK 3 ORIGIN FOR THE GROUP (A): 4.5184 -39.7766 -3.4964 REMARK 3 T TENSOR REMARK 3 T11: 0.9171 T22: 0.8530 REMARK 3 T33: 0.7262 T12: 0.1241 REMARK 3 T13: -0.2361 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 5.4000 L22: 9.7091 REMARK 3 L33: 9.5984 L12: 1.5754 REMARK 3 L13: 2.9927 L23: 4.6963 REMARK 3 S TENSOR REMARK 3 S11: 0.9814 S12: 0.0577 S13: -1.2073 REMARK 3 S21: 0.1010 S22: -0.4822 S23: -0.3053 REMARK 3 S31: 0.4733 S32: 0.2886 S33: -0.4579 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SF FILE CONTAINS FRIEDEL PAIRS UNDER REMARK 3 I/F_MINUS AND I/F_PLUS COLUMNS. REMARK 4 REMARK 4 5CD8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211424. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9641 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11302 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.45600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CD7 REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 400, 200MM MG(AC)2, 100MM REMARK 280 NAAC, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.22067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.61033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 224 REMARK 465 ASN A 225 REMARK 465 GLY A 226 REMARK 465 HIS A 227 REMARK 465 LEU A 228 REMARK 465 LEU A 229 REMARK 465 ASP A 230 REMARK 465 MET A 231 REMARK 465 VAL A 232 REMARK 465 LEU A 233 REMARK 465 ASN A 234 REMARK 465 GLN A 235 REMARK 465 LYS A 236 REMARK 465 GLU A 237 REMARK 465 ARG A 238 REMARK 465 THR A 239 REMARK 465 SER A 240 REMARK 465 SER B 222 REMARK 465 LEU B 223 REMARK 465 LYS B 224 REMARK 465 ASN B 225 REMARK 465 GLY B 226 REMARK 465 HIS B 227 REMARK 465 LEU B 228 REMARK 465 LEU B 229 REMARK 465 ASP B 230 REMARK 465 MET B 231 REMARK 465 VAL B 232 REMARK 465 LEU B 233 REMARK 465 ASN B 234 REMARK 465 GLN B 235 REMARK 465 LYS B 236 REMARK 465 GLU B 237 REMARK 465 ARG B 238 REMARK 465 THR B 239 REMARK 465 SER B 240 REMARK 465 SER C 222 REMARK 465 LEU C 223 REMARK 465 LYS C 224 REMARK 465 ASN C 225 REMARK 465 GLY C 226 REMARK 465 HIS C 227 REMARK 465 LEU C 228 REMARK 465 LEU C 229 REMARK 465 ASP C 230 REMARK 465 MET C 231 REMARK 465 VAL C 232 REMARK 465 LEU C 233 REMARK 465 ASN C 234 REMARK 465 GLN C 235 REMARK 465 LYS C 236 REMARK 465 GLU C 237 REMARK 465 ARG C 238 REMARK 465 THR C 239 REMARK 465 SER C 240 REMARK 465 ALA D 221 REMARK 465 SER D 222 REMARK 465 LEU D 223 REMARK 465 LYS D 224 REMARK 465 ASN D 225 REMARK 465 GLY D 226 REMARK 465 HIS D 227 REMARK 465 LEU D 228 REMARK 465 LEU D 229 REMARK 465 ASP D 230 REMARK 465 MET D 231 REMARK 465 VAL D 232 REMARK 465 LEU D 233 REMARK 465 ASN D 234 REMARK 465 GLN D 235 REMARK 465 LYS D 236 REMARK 465 GLU D 237 REMARK 465 ARG D 238 REMARK 465 THR D 239 REMARK 465 SER D 240 REMARK 465 GLY E 148 REMARK 465 SER E 149 REMARK 465 ARG E 150 REMARK 465 GLU E 151 REMARK 465 SER E 222 REMARK 465 LEU E 223 REMARK 465 LYS E 224 REMARK 465 ASN E 225 REMARK 465 GLY E 226 REMARK 465 HIS E 227 REMARK 465 LEU E 228 REMARK 465 LEU E 229 REMARK 465 ASP E 230 REMARK 465 MET E 231 REMARK 465 VAL E 232 REMARK 465 LEU E 233 REMARK 465 ASN E 234 REMARK 465 GLN E 235 REMARK 465 LYS E 236 REMARK 465 GLU E 237 REMARK 465 ARG E 238 REMARK 465 THR E 239 REMARK 465 SER E 240 REMARK 465 ALA F 221 REMARK 465 SER F 222 REMARK 465 LEU F 223 REMARK 465 LYS F 224 REMARK 465 ASN F 225 REMARK 465 GLY F 226 REMARK 465 HIS F 227 REMARK 465 LEU F 228 REMARK 465 LEU F 229 REMARK 465 ASP F 230 REMARK 465 MET F 231 REMARK 465 VAL F 232 REMARK 465 LEU F 233 REMARK 465 ASN F 234 REMARK 465 GLN F 235 REMARK 465 LYS F 236 REMARK 465 GLU F 237 REMARK 465 ARG F 238 REMARK 465 THR F 239 REMARK 465 SER F 240 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN D 169 OE1 GLU E 152 2434 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 204 -1.33 80.63 REMARK 500 ASN B 204 -3.23 77.74 REMARK 500 GLU B 208 160.25 177.34 REMARK 500 HIS C 192 -60.37 -124.78 REMARK 500 ASN C 204 -4.19 71.29 REMARK 500 SER D 149 -61.00 -128.78 REMARK 500 ASP D 157 -71.96 -55.04 REMARK 500 GLN D 169 -73.22 -52.42 REMARK 500 ASN D 204 -14.30 74.61 REMARK 500 ASP E 157 -70.32 -53.14 REMARK 500 ASN E 204 -5.46 77.05 REMARK 500 ASN E 218 -169.02 -163.39 REMARK 500 GLN F 169 -73.88 -55.14 REMARK 500 ASN F 204 -12.21 76.08 REMARK 500 ASN F 218 -167.49 -164.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CD7 RELATED DB: PDB REMARK 900 RELATED ID: 5CD9 RELATED DB: PDB DBREF 5CD8 A 150 240 UNP P25158 OSKA_DROME 150 240 DBREF 5CD8 B 150 240 UNP P25158 OSKA_DROME 150 240 DBREF 5CD8 C 150 240 UNP P25158 OSKA_DROME 150 240 DBREF 5CD8 D 150 240 UNP P25158 OSKA_DROME 150 240 DBREF 5CD8 E 150 240 UNP P25158 OSKA_DROME 150 240 DBREF 5CD8 F 150 240 UNP P25158 OSKA_DROME 150 240 SEQADV 5CD8 GLY A 148 UNP P25158 EXPRESSION TAG SEQADV 5CD8 SER A 149 UNP P25158 EXPRESSION TAG SEQADV 5CD8 GLY B 148 UNP P25158 EXPRESSION TAG SEQADV 5CD8 SER B 149 UNP P25158 EXPRESSION TAG SEQADV 5CD8 GLY C 148 UNP P25158 EXPRESSION TAG SEQADV 5CD8 SER C 149 UNP P25158 EXPRESSION TAG SEQADV 5CD8 GLY D 148 UNP P25158 EXPRESSION TAG SEQADV 5CD8 SER D 149 UNP P25158 EXPRESSION TAG SEQADV 5CD8 GLY E 148 UNP P25158 EXPRESSION TAG SEQADV 5CD8 SER E 149 UNP P25158 EXPRESSION TAG SEQADV 5CD8 GLY F 148 UNP P25158 EXPRESSION TAG SEQADV 5CD8 SER F 149 UNP P25158 EXPRESSION TAG SEQRES 1 A 93 GLY SER ARG GLU GLU TYR PRO ASP ILE ASP SER GLU VAL SEQRES 2 A 93 ARG ALA ILE LEU LEU SER HIS ALA GLN ASN GLY ILE THR SEQRES 3 A 93 ILE SER SER ILE LYS SER GLU TYR ARG LYS LEU THR GLY SEQRES 4 A 93 ASN PRO PHE PRO LEU HIS ASP ASN VAL THR ASP PHE LEU SEQRES 5 A 93 LEU THR ILE PRO ASN VAL THR ALA GLU CYS SER GLU SER SEQRES 6 A 93 GLY LYS ARG ILE PHE ASN LEU LYS ALA SER LEU LYS ASN SEQRES 7 A 93 GLY HIS LEU LEU ASP MET VAL LEU ASN GLN LYS GLU ARG SEQRES 8 A 93 THR SER SEQRES 1 B 93 GLY SER ARG GLU GLU TYR PRO ASP ILE ASP SER GLU VAL SEQRES 2 B 93 ARG ALA ILE LEU LEU SER HIS ALA GLN ASN GLY ILE THR SEQRES 3 B 93 ILE SER SER ILE LYS SER GLU TYR ARG LYS LEU THR GLY SEQRES 4 B 93 ASN PRO PHE PRO LEU HIS ASP ASN VAL THR ASP PHE LEU SEQRES 5 B 93 LEU THR ILE PRO ASN VAL THR ALA GLU CYS SER GLU SER SEQRES 6 B 93 GLY LYS ARG ILE PHE ASN LEU LYS ALA SER LEU LYS ASN SEQRES 7 B 93 GLY HIS LEU LEU ASP MET VAL LEU ASN GLN LYS GLU ARG SEQRES 8 B 93 THR SER SEQRES 1 C 93 GLY SER ARG GLU GLU TYR PRO ASP ILE ASP SER GLU VAL SEQRES 2 C 93 ARG ALA ILE LEU LEU SER HIS ALA GLN ASN GLY ILE THR SEQRES 3 C 93 ILE SER SER ILE LYS SER GLU TYR ARG LYS LEU THR GLY SEQRES 4 C 93 ASN PRO PHE PRO LEU HIS ASP ASN VAL THR ASP PHE LEU SEQRES 5 C 93 LEU THR ILE PRO ASN VAL THR ALA GLU CYS SER GLU SER SEQRES 6 C 93 GLY LYS ARG ILE PHE ASN LEU LYS ALA SER LEU LYS ASN SEQRES 7 C 93 GLY HIS LEU LEU ASP MET VAL LEU ASN GLN LYS GLU ARG SEQRES 8 C 93 THR SER SEQRES 1 D 93 GLY SER ARG GLU GLU TYR PRO ASP ILE ASP SER GLU VAL SEQRES 2 D 93 ARG ALA ILE LEU LEU SER HIS ALA GLN ASN GLY ILE THR SEQRES 3 D 93 ILE SER SER ILE LYS SER GLU TYR ARG LYS LEU THR GLY SEQRES 4 D 93 ASN PRO PHE PRO LEU HIS ASP ASN VAL THR ASP PHE LEU SEQRES 5 D 93 LEU THR ILE PRO ASN VAL THR ALA GLU CYS SER GLU SER SEQRES 6 D 93 GLY LYS ARG ILE PHE ASN LEU LYS ALA SER LEU LYS ASN SEQRES 7 D 93 GLY HIS LEU LEU ASP MET VAL LEU ASN GLN LYS GLU ARG SEQRES 8 D 93 THR SER SEQRES 1 E 93 GLY SER ARG GLU GLU TYR PRO ASP ILE ASP SER GLU VAL SEQRES 2 E 93 ARG ALA ILE LEU LEU SER HIS ALA GLN ASN GLY ILE THR SEQRES 3 E 93 ILE SER SER ILE LYS SER GLU TYR ARG LYS LEU THR GLY SEQRES 4 E 93 ASN PRO PHE PRO LEU HIS ASP ASN VAL THR ASP PHE LEU SEQRES 5 E 93 LEU THR ILE PRO ASN VAL THR ALA GLU CYS SER GLU SER SEQRES 6 E 93 GLY LYS ARG ILE PHE ASN LEU LYS ALA SER LEU LYS ASN SEQRES 7 E 93 GLY HIS LEU LEU ASP MET VAL LEU ASN GLN LYS GLU ARG SEQRES 8 E 93 THR SER SEQRES 1 F 93 GLY SER ARG GLU GLU TYR PRO ASP ILE ASP SER GLU VAL SEQRES 2 F 93 ARG ALA ILE LEU LEU SER HIS ALA GLN ASN GLY ILE THR SEQRES 3 F 93 ILE SER SER ILE LYS SER GLU TYR ARG LYS LEU THR GLY SEQRES 4 F 93 ASN PRO PHE PRO LEU HIS ASP ASN VAL THR ASP PHE LEU SEQRES 5 F 93 LEU THR ILE PRO ASN VAL THR ALA GLU CYS SER GLU SER SEQRES 6 F 93 GLY LYS ARG ILE PHE ASN LEU LYS ALA SER LEU LYS ASN SEQRES 7 F 93 GLY HIS LEU LEU ASP MET VAL LEU ASN GLN LYS GLU ARG SEQRES 8 F 93 THR SER HET GOL A 301 6 HET GOL D 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *7(H2 O) HELIX 1 AA1 ASP A 155 ALA A 168 1 14 HELIX 2 AA2 THR A 173 GLY A 186 1 14 HELIX 3 AA3 ASN A 194 ILE A 202 1 9 HELIX 4 AA4 GLY B 148 GLU B 152 5 5 HELIX 5 AA5 ASP B 155 ALA B 168 1 14 HELIX 6 AA6 THR B 173 GLY B 186 1 14 HELIX 7 AA7 ASN B 194 LEU B 200 1 7 HELIX 8 AA8 ASP C 155 ALA C 168 1 14 HELIX 9 AA9 THR C 173 GLY C 186 1 14 HELIX 10 AB1 ASN C 194 THR C 201 1 8 HELIX 11 AB2 SER D 149 TYR D 153 5 5 HELIX 12 AB3 ASP D 155 HIS D 167 1 13 HELIX 13 AB4 THR D 173 GLY D 186 1 14 HELIX 14 AB5 ASN D 194 LEU D 200 1 7 HELIX 15 AB6 ASP E 155 ALA E 168 1 14 HELIX 16 AB7 THR E 173 THR E 185 1 13 HELIX 17 AB8 ASN E 194 ILE E 202 1 9 HELIX 18 AB9 ASP F 155 ALA F 168 1 14 HELIX 19 AC1 THR F 173 GLY F 186 1 14 HELIX 20 AC2 ASN F 194 LEU F 200 1 7 SHEET 1 AA1 4 ARG A 215 LEU A 219 0 SHEET 2 AA1 4 VAL A 205 CYS A 209 -1 N GLU A 208 O ILE A 216 SHEET 3 AA1 4 THR B 206 CYS B 209 -1 O ALA B 207 N ALA A 207 SHEET 4 AA1 4 ARG B 215 ASN B 218 -1 O ASN B 218 N THR B 206 SHEET 1 AA2 4 ARG C 215 LEU C 219 0 SHEET 2 AA2 4 VAL C 205 CYS C 209 -1 N GLU C 208 O ILE C 216 SHEET 3 AA2 4 THR D 206 CYS D 209 -1 O ALA D 207 N ALA C 207 SHEET 4 AA2 4 ARG D 215 ASN D 218 -1 O ILE D 216 N GLU D 208 SHEET 1 AA3 4 ARG E 215 LEU E 219 0 SHEET 2 AA3 4 VAL E 205 CYS E 209 -1 N GLU E 208 O ILE E 216 SHEET 3 AA3 4 VAL F 205 CYS F 209 -1 O ALA F 207 N ALA E 207 SHEET 4 AA3 4 ARG F 215 LEU F 219 -1 O ASN F 218 N THR F 206 SITE 1 AC1 2 GLY A 148 SER A 149 SITE 1 AC2 4 GLY B 148 SER B 149 ASN D 194 ASP D 197 CRYST1 66.951 66.951 112.831 90.00 90.00 120.00 P 32 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014936 0.008623 0.000000 0.00000 SCALE2 0.000000 0.017247 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008863 0.00000