data_5CDB # _entry.id 5CDB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5CDB pdb_00005cdb 10.2210/pdb5cdb/pdb WWPDB D_1000211428 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-07-20 2 'Structure model' 1 1 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_conn.pdbx_dist_value' 4 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 5 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 12 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 16 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 17 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5CDB _pdbx_database_status.recvd_initial_deposition_date 2015-07-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ferraroni, M.' 1 'Bazzicalupi, C.' 2 'Gratteri, P.' 3 'Papi, F.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country DE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chem Asian J' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1861-471X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 11 _citation.language ? _citation.page_first 1107 _citation.page_last 1115 _citation.title 'Solution and Solid-State Analysis of Binding of 13-Substituted Berberine Analogues to Human Telomeric G-quadruplexes.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/asia.201600116 _citation.pdbx_database_id_PubMed 26865223 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ferraroni, M.' 1 ? primary 'Bazzicalupi, C.' 2 ? primary 'Papi, F.' 3 ? primary 'Fiorillo, G.' 4 ? primary 'Guaman-Ortiz, L.M.' 5 ? primary 'Nocentini, A.' 6 ? primary 'Scovassi, A.I.' 7 ? primary 'Lombardi, P.' 8 ? primary 'Gratteri, P.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'human telomeric DNA' 3773.462 2 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 3 non-polymer man '13-diphenylalkyl Berberine' 544.659 1 ? ? ? ? 4 water nat water 18.015 28 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)' _entity_poly.pdbx_seq_one_letter_code_can TAGGGTTAGGGT _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 '13-diphenylalkyl Berberine' 50B 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DT n 1 7 DT n 1 8 DA n 1 9 DG n 1 10 DG n 1 11 DG n 1 12 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 50B non-polymer . '13-diphenylalkyl Berberine' ? 'C36 H34 N O4 1' 544.659 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DT 12 12 12 DT DT A . n B 1 1 DT 1 13 13 DT DT B . n B 1 2 DA 2 14 14 DA DA B . n B 1 3 DG 3 15 15 DG DG B . n B 1 4 DG 4 16 16 DG DG B . n B 1 5 DG 5 17 17 DG DG B . n B 1 6 DT 6 18 18 DT DT B . n B 1 7 DT 7 19 19 DT DT B . n B 1 8 DA 8 20 20 DA DA B . n B 1 9 DG 9 21 21 DG DG B . n B 1 10 DG 10 22 22 DG DG B . n B 1 11 DG 11 23 23 DG DG B . n B 1 12 DT 12 24 24 DT DT B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K 1 101 2 K K A . D 3 50B 1 102 1 50B BNX A . E 2 K 1 101 1 K K B . F 4 HOH 1 201 15 HOH HOH A . F 4 HOH 2 202 24 HOH HOH A . F 4 HOH 3 203 1 HOH HOH A . F 4 HOH 4 204 23 HOH HOH A . F 4 HOH 5 205 12 HOH HOH A . F 4 HOH 6 206 27 HOH HOH A . F 4 HOH 7 207 14 HOH HOH A . F 4 HOH 8 208 21 HOH HOH A . F 4 HOH 9 209 9 HOH HOH A . F 4 HOH 10 210 19 HOH HOH A . F 4 HOH 11 211 10 HOH HOH A . F 4 HOH 12 212 16 HOH HOH A . F 4 HOH 13 213 6 HOH HOH A . F 4 HOH 14 214 18 HOH HOH A . F 4 HOH 15 215 17 HOH HOH A . F 4 HOH 16 216 7 HOH HOH A . F 4 HOH 17 217 25 HOH HOH A . F 4 HOH 18 218 5 HOH HOH A . G 4 HOH 1 201 28 HOH HOH B . G 4 HOH 2 202 8 HOH HOH B . G 4 HOH 3 203 3 HOH HOH B . G 4 HOH 4 204 2 HOH HOH B . G 4 HOH 5 205 13 HOH HOH B . G 4 HOH 6 206 11 HOH HOH B . G 4 HOH 7 207 4 HOH HOH B . G 4 HOH 8 208 22 HOH HOH B . G 4 HOH 9 209 20 HOH HOH B . G 4 HOH 10 210 26 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DT 1 ? "O5'" ? A DT 1 "O5'" 2 1 Y 1 B DT 13 ? "O5'" ? B DT 1 "O5'" 3 1 Y 1 B DT 13 ? "C5'" ? B DT 1 "C5'" 4 1 Y 1 B DT 18 ? N1 ? B DT 6 N1 5 1 Y 1 B DT 18 ? C2 ? B DT 6 C2 6 1 Y 1 B DT 18 ? O2 ? B DT 6 O2 7 1 Y 1 B DT 18 ? N3 ? B DT 6 N3 8 1 Y 1 B DT 18 ? C4 ? B DT 6 C4 9 1 Y 1 B DT 18 ? O4 ? B DT 6 O4 10 1 Y 1 B DT 18 ? C5 ? B DT 6 C5 11 1 Y 1 B DT 18 ? C7 ? B DT 6 C7 12 1 Y 1 B DT 18 ? C6 ? B DT 6 C6 13 1 Y 1 B DT 24 ? C2 ? B DT 12 C2 14 1 Y 1 B DT 24 ? O2 ? B DT 12 O2 15 1 Y 1 B DT 24 ? N3 ? B DT 12 N3 16 1 Y 1 B DT 24 ? C4 ? B DT 12 C4 17 1 Y 1 B DT 24 ? O4 ? B DT 12 O4 18 1 Y 1 B DT 24 ? C5 ? B DT 12 C5 19 1 Y 1 B DT 24 ? C7 ? B DT 12 C7 20 1 Y 1 B DT 24 ? C6 ? B DT 12 C6 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.5.6 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0073 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5CDB _cell.details ? _cell.formula_units_Z ? _cell.length_a 41.132 _cell.length_a_esd ? _cell.length_b 41.132 _cell.length_b_esd ? _cell.length_c 71.204 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5CDB _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.00 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 38.35 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'ammonium sulphate, lithium sulphate, sodium cacodylate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-05-08 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID23-1 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate 47.638 _reflns.entry_id 5CDB _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.700 _reflns.d_resolution_low 35.62 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7183 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.000 _reflns.percent_possible_obs 98.900 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs 1.000 _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 25.5 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.830 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.128 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.064 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 183179 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.700 1.800 ? 0.840 ? 12699 1138 ? 1061 93.200 ? ? 0.982 ? 2.012 ? ? ? ? ? ? ? ? 11.9 ? ? ? ? 2.103 ? 0 1 1 ? ? 1.800 1.920 ? 1.220 ? 20866 1073 ? 1073 100.000 ? ? 0.787 ? 2.444 ? ? ? ? ? ? ? ? ? ? ? ? ? 2.510 ? 0 2 1 ? ? 1.920 2.080 ? 2.670 ? 31103 1005 ? 1005 100.000 ? ? 0.896 ? 1.592 ? ? ? ? ? ? ? ? ? ? ? ? ? 1.619 ? 0 3 1 ? ? 2.080 2.270 ? 5.570 ? 27857 927 ? 927 100.000 ? ? 0.978 ? 0.789 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.803 ? 0 4 1 ? ? 2.270 2.540 ? 13.100 ? 26882 846 ? 846 100.000 ? ? 0.997 ? 0.328 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.333 ? 0 5 1 ? ? 2.540 2.930 ? 28.350 ? 22590 762 ? 762 100.000 ? ? 1.000 ? 0.121 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.123 ? 0 6 1 ? ? 2.930 3.580 ? 56.920 ? 18705 651 ? 651 100.000 ? ? 1.000 ? 0.041 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.042 ? 0 7 1 ? ? 3.580 5.040 ? 79.710 ? 14534 523 ? 523 100.000 ? ? 1.000 ? 0.041 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.041 ? 0 8 1 ? ? 5.040 ? ? 84.070 ? 7943 335 ? 335 100.000 ? ? 0.999 ? 0.038 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.039 ? 0 9 1 ? ? # _refine.aniso_B[1][1] 0.5000 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][2] 0.5000 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] -1.0100 _refine.B_iso_max 109.800 _refine.B_iso_mean 45.8850 _refine.B_iso_min 29.290 _refine.correlation_coeff_Fo_to_Fc 0.9760 _refine.correlation_coeff_Fo_to_Fc_free 0.9290 _refine.details 'U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5CDB _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.7000 _refine.ls_d_res_low 35.6200 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7120 _refine.ls_number_reflns_R_free 355 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.0800 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2335 _refine.ls_R_factor_R_free 0.2841 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2311 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free 0.2935 _refine.ls_wR_factor_R_work 0.2343 _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4P1D _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1400 _refine.pdbx_overall_ESU_R_Free 0.1410 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 4.6810 _refine.overall_SU_ML 0.1310 _refine.overall_SU_R_Cruickshank_DPI 0.1397 _refine.overall_SU_R_free 0.1409 _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set 0.6624 _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.7000 _refine_hist.d_res_low 35.6200 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 553 _refine_hist.pdbx_number_residues_total 24 _refine_hist.pdbx_B_iso_mean_ligand 52.72 _refine_hist.pdbx_B_iso_mean_solvent 60.87 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 482 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 0.014 589 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 1.813 1.679 905 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.105 0.200 72 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 0.020 286 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 3.291 4.863 587 ? r_scbond_it ? ? # _struct.entry_id 5CDB _struct.title 'Structure of the complex of a bimolecular human telomeric DNA with a 13-diphenylalkyl Berberine derivative' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5CDB _struct_keywords.text 'DRUG-DNA COMPLEX, G-QUADRUPLEX, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5CDB _struct_ref.pdbx_db_accession 5CDB _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5CDB A 1 ? 12 ? 5CDB 1 ? 12 ? 1 12 2 1 5CDB B 1 ? 12 ? 5CDB 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1950 ? 1 MORE -8 ? 1 'SSA (A^2)' 4560 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 3 O6 ? ? ? 1_555 E K . K ? ? A DG 3 B K 101 1_555 ? ? ? ? ? ? ? 2.658 ? ? metalc2 metalc ? ? A DG 4 O6 ? ? ? 1_555 C K . K ? ? A DG 4 A K 101 1_555 ? ? ? ? ? ? ? 2.893 ? ? metalc3 metalc ? ? A DG 4 O6 ? ? ? 1_555 E K . K ? ? A DG 4 B K 101 1_555 ? ? ? ? ? ? ? 2.856 ? ? metalc4 metalc ? ? A DG 5 O6 ? ? ? 1_555 C K . K ? ? A DG 5 A K 101 1_555 ? ? ? ? ? ? ? 2.725 ? ? metalc5 metalc ? ? A DG 9 O6 ? ? ? 1_555 E K . K ? ? A DG 9 B K 101 1_555 ? ? ? ? ? ? ? 2.756 ? ? metalc6 metalc ? ? A DG 10 O6 ? ? ? 1_555 C K . K ? ? A DG 10 A K 101 1_555 ? ? ? ? ? ? ? 2.886 ? ? metalc7 metalc ? ? A DG 10 O6 ? ? ? 1_555 E K . K ? ? A DG 10 B K 101 1_555 ? ? ? ? ? ? ? 2.838 ? ? metalc8 metalc ? ? A DG 11 O6 ? ? ? 1_555 C K . K ? ? A DG 11 A K 101 1_555 ? ? ? ? ? ? ? 2.745 ? ? metalc9 metalc ? ? C K . K ? ? ? 1_555 B DG 4 O6 ? ? A K 101 B DG 16 1_555 ? ? ? ? ? ? ? 2.889 ? ? metalc10 metalc ? ? C K . K ? ? ? 1_555 B DG 5 O6 ? ? A K 101 B DG 17 1_555 ? ? ? ? ? ? ? 2.657 ? ? metalc11 metalc ? ? C K . K ? ? ? 1_555 B DG 10 O6 ? ? A K 101 B DG 22 1_555 ? ? ? ? ? ? ? 2.862 ? ? metalc12 metalc ? ? C K . K ? ? ? 1_555 B DG 11 O6 ? ? A K 101 B DG 23 1_555 ? ? ? ? ? ? ? 2.689 ? ? metalc13 metalc ? ? B DG 3 O6 ? ? ? 1_555 E K . K ? ? B DG 15 B K 101 1_555 ? ? ? ? ? ? ? 2.602 ? ? metalc14 metalc ? ? B DG 4 O6 ? ? ? 1_555 E K . K ? ? B DG 16 B K 101 1_555 ? ? ? ? ? ? ? 2.852 ? ? metalc15 metalc ? ? B DG 9 O6 ? ? ? 1_555 E K . K ? ? B DG 21 B K 101 1_555 ? ? ? ? ? ? ? 2.813 ? ? metalc16 metalc ? ? B DG 10 O6 ? ? ? 1_555 E K . K ? ? B DG 22 B K 101 1_555 ? ? ? ? ? ? ? 2.886 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 1 B DA 14 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog2 hydrog ? ? A DT 1 O2 ? ? ? 1_555 B DA 2 N6 ? ? A DT 1 B DA 14 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog3 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 2 B DT 13 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog4 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 1 O2 ? ? A DA 2 B DT 13 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 N7 ? ? ? 1_555 B DG 9 N2 ? ? A DG 3 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DG 9 N1 ? ? A DG 3 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 4 N7 ? ? ? 1_555 B DG 10 N2 ? ? A DG 4 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DG 10 N1 ? ? A DG 4 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 11 O6 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 11 N7 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 5 N7 ? ? ? 1_555 B DG 11 N2 ? ? A DG 5 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DG 11 N1 ? ? A DG 5 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DG 3 O6 ? ? A DG 9 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DG 3 N7 ? ? A DG 9 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DG 4 O6 ? ? A DG 10 B DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DG 4 N7 ? ? A DG 10 B DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DG 5 O6 ? ? A DG 11 B DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DG 5 N7 ? ? A DG 11 B DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? B DG 3 N1 ? ? ? 1_555 B DG 9 O6 ? ? B DG 15 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? B DG 3 N2 ? ? ? 1_555 B DG 9 N7 ? ? B DG 15 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? B DG 4 N1 ? ? ? 1_555 B DG 10 O6 ? ? B DG 16 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? B DG 4 N2 ? ? ? 1_555 B DG 10 N7 ? ? B DG 16 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? B DG 5 N1 ? ? ? 1_555 B DG 11 O6 ? ? B DG 17 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? B DG 5 N2 ? ? ? 1_555 B DG 11 N7 ? ? B DG 17 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 74.1 ? 2 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 72.9 ? 3 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 89.2 ? 4 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 131.4 ? 5 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 66.9 ? 6 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 78.6 ? 7 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 3 ? B DG 15 ? 1_555 120.9 ? 8 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 3 ? B DG 15 ? 1_555 152.1 ? 9 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 3 ? B DG 15 ? 1_555 75.0 ? 10 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 3 ? B DG 15 ? 1_555 87.3 ? 11 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 151.8 ? 12 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 104.2 ? 13 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 135.1 ? 14 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 68.5 ? 15 O6 ? B DG 3 ? B DG 15 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 73.8 ? 16 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 9 ? B DG 21 ? 1_555 74.8 ? 17 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 9 ? B DG 21 ? 1_555 133.7 ? 18 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 9 ? B DG 21 ? 1_555 113.1 ? 19 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 9 ? B DG 21 ? 1_555 153.8 ? 20 O6 ? B DG 3 ? B DG 15 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 9 ? B DG 21 ? 1_555 74.2 ? 21 O6 ? B DG 4 ? B DG 16 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 9 ? B DG 21 ? 1_555 88.3 ? 22 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 87.5 ? 23 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 68.6 ? 24 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 153.9 ? 25 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 103.4 ? 26 O6 ? B DG 3 ? B DG 15 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 130.8 ? 27 O6 ? B DG 4 ? B DG 16 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 66.5 ? 28 O6 ? B DG 9 ? B DG 21 ? 1_555 K ? E K . ? B K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 76.6 ? 29 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 70.7 ? 30 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 65.7 ? 31 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 90.2 ? 32 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 126.1 ? 33 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 75.6 ? 34 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 73.8 ? 35 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 102.3 ? 36 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 157.0 ? 37 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 67.3 ? 38 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 92.8 ? 39 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 17 ? 1_555 159.7 ? 40 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 17 ? 1_555 121.4 ? 41 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 17 ? 1_555 126.3 ? 42 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 17 ? 1_555 74.2 ? 43 O6 ? B DG 4 ? B DG 16 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 17 ? 1_555 72.5 ? 44 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 68.4 ? 45 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 126.5 ? 46 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 102.8 ? 47 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 157.9 ? 48 O6 ? B DG 4 ? B DG 16 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 66.3 ? 49 O6 ? B DG 5 ? B DG 17 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 91.9 ? 50 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 92.5 ? 51 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 74.9 ? 52 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 157.0 ? 53 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 117.7 ? 54 O6 ? B DG 4 ? B DG 16 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 127.9 ? 55 O6 ? B DG 5 ? B DG 17 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 76.7 ? 56 O6 ? B DG 10 ? B DG 22 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 73.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 101 ? 9 'binding site for residue K A 101' AC2 Software A 50B 102 ? 8 'binding site for residue 50B A 102' AC3 Software B K 101 ? 9 'binding site for residue K B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DG A 4 ? DG A 4 . ? 1_555 ? 2 AC1 9 DG A 5 ? DG A 5 . ? 1_555 ? 3 AC1 9 DG A 10 ? DG A 10 . ? 1_555 ? 4 AC1 9 DG A 11 ? DG A 11 . ? 1_555 ? 5 AC1 9 DG B 4 ? DG B 16 . ? 1_555 ? 6 AC1 9 DG B 5 ? DG B 17 . ? 1_555 ? 7 AC1 9 DG B 10 ? DG B 22 . ? 1_555 ? 8 AC1 9 DG B 11 ? DG B 23 . ? 1_555 ? 9 AC1 9 K E . ? K B 101 . ? 1_555 ? 10 AC2 8 DT A 1 ? DT A 1 . ? 1_555 ? 11 AC2 8 DA A 2 ? DA A 2 . ? 1_555 ? 12 AC2 8 DG A 5 ? DG A 5 . ? 3_445 ? 13 AC2 8 DG A 11 ? DG A 11 . ? 3_445 ? 14 AC2 8 DT B 1 ? DT B 13 . ? 1_555 ? 15 AC2 8 DA B 2 ? DA B 14 . ? 1_555 ? 16 AC2 8 DG B 5 ? DG B 17 . ? 3_445 ? 17 AC2 8 DG B 11 ? DG B 23 . ? 3_445 ? 18 AC3 9 DG A 3 ? DG A 3 . ? 1_555 ? 19 AC3 9 DG A 4 ? DG A 4 . ? 1_555 ? 20 AC3 9 DG A 9 ? DG A 9 . ? 1_555 ? 21 AC3 9 DG A 10 ? DG A 10 . ? 1_555 ? 22 AC3 9 K C . ? K A 101 . ? 1_555 ? 23 AC3 9 DG B 3 ? DG B 15 . ? 1_555 ? 24 AC3 9 DG B 4 ? DG B 16 . ? 1_555 ? 25 AC3 9 DG B 9 ? DG B 21 . ? 1_555 ? 26 AC3 9 DG B 10 ? DG B 22 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N3 A DT 1 ? ? C4 A DT 1 ? ? 1.334 1.382 -0.048 0.008 N 2 1 N1 A DT 6 ? ? C2 A DT 6 ? ? 1.425 1.376 0.049 0.008 N 3 1 C5 A DT 6 ? ? C6 A DT 6 ? ? 1.389 1.339 0.050 0.007 N 4 1 N1 A DT 7 ? ? C2 A DT 7 ? ? 1.426 1.376 0.050 0.008 N 5 1 C5 A DT 7 ? ? C6 A DT 7 ? ? 1.385 1.339 0.046 0.007 N 6 1 N1 A DT 12 ? ? C2 A DT 12 ? ? 1.428 1.376 0.052 0.008 N 7 1 C5 A DT 12 ? ? C6 A DT 12 ? ? 1.382 1.339 0.043 0.007 N 8 1 N3 B DT 13 ? ? C4 B DT 13 ? ? 1.332 1.382 -0.050 0.008 N 9 1 C5 B DT 13 ? ? C6 B DT 13 ? ? 1.384 1.339 0.045 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A DT 1 ? ? C2 A DT 1 ? ? N3 A DT 1 ? ? 120.65 114.60 6.05 0.60 N 2 1 C2 A DT 1 ? ? N3 A DT 1 ? ? C4 A DT 1 ? ? 120.69 127.20 -6.51 0.60 N 3 1 N3 A DT 1 ? ? C4 A DT 1 ? ? C5 A DT 1 ? ? 119.99 115.20 4.79 0.60 N 4 1 N3 A DT 1 ? ? C2 A DT 1 ? ? O2 A DT 1 ? ? 118.00 122.30 -4.30 0.60 N 5 1 C5 A DT 1 ? ? C4 A DT 1 ? ? O4 A DT 1 ? ? 120.19 124.90 -4.71 0.70 N 6 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.43 108.30 3.13 0.30 N 7 1 N1 A DT 6 ? ? C2 A DT 6 ? ? N3 A DT 6 ? ? 121.36 114.60 6.76 0.60 N 8 1 C2 A DT 6 ? ? N3 A DT 6 ? ? C4 A DT 6 ? ? 120.09 127.20 -7.11 0.60 N 9 1 N3 A DT 6 ? ? C4 A DT 6 ? ? C5 A DT 6 ? ? 119.75 115.20 4.55 0.60 N 10 1 C5 A DT 6 ? ? C6 A DT 6 ? ? N1 A DT 6 ? ? 119.57 123.70 -4.13 0.60 N 11 1 N3 A DT 6 ? ? C2 A DT 6 ? ? O2 A DT 6 ? ? 118.63 122.30 -3.67 0.60 N 12 1 C5 A DT 6 ? ? C4 A DT 6 ? ? O4 A DT 6 ? ? 120.28 124.90 -4.62 0.70 N 13 1 N1 A DT 7 ? ? C2 A DT 7 ? ? N3 A DT 7 ? ? 120.26 114.60 5.66 0.60 N 14 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 121.39 127.20 -5.81 0.60 N 15 1 N3 A DT 7 ? ? C4 A DT 7 ? ? C5 A DT 7 ? ? 119.83 115.20 4.63 0.60 N 16 1 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.16 122.30 -4.14 0.60 N 17 1 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 103.08 108.00 -4.92 0.70 N 18 1 N1 A DT 12 ? ? C2 A DT 12 ? ? N3 A DT 12 ? ? 120.57 114.60 5.97 0.60 N 19 1 C2 A DT 12 ? ? N3 A DT 12 ? ? C4 A DT 12 ? ? 120.94 127.20 -6.26 0.60 N 20 1 N3 A DT 12 ? ? C4 A DT 12 ? ? C5 A DT 12 ? ? 119.47 115.20 4.27 0.60 N 21 1 N3 A DT 12 ? ? C2 A DT 12 ? ? O2 A DT 12 ? ? 118.50 122.30 -3.80 0.60 N 22 1 C5 A DT 12 ? ? C4 A DT 12 ? ? O4 A DT 12 ? ? 120.45 124.90 -4.45 0.70 N 23 1 N1 B DT 13 ? ? C2 B DT 13 ? ? N3 B DT 13 ? ? 120.15 114.60 5.55 0.60 N 24 1 C2 B DT 13 ? ? N3 B DT 13 ? ? C4 B DT 13 ? ? 121.79 127.20 -5.41 0.60 N 25 1 N3 B DT 13 ? ? C4 B DT 13 ? ? C5 B DT 13 ? ? 119.06 115.20 3.86 0.60 N 26 1 C5 B DT 13 ? ? C6 B DT 13 ? ? N1 B DT 13 ? ? 120.00 123.70 -3.70 0.60 N 27 1 N3 B DT 13 ? ? C2 B DT 13 ? ? O2 B DT 13 ? ? 118.38 122.30 -3.92 0.60 N 28 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.66 108.30 2.36 0.30 N 29 1 N1 B DT 19 ? ? C2 B DT 19 ? ? N3 B DT 19 ? ? 120.78 114.60 6.18 0.60 N 30 1 C2 B DT 19 ? ? N3 B DT 19 ? ? C4 B DT 19 ? ? 121.07 127.20 -6.13 0.60 N 31 1 N3 B DT 19 ? ? C4 B DT 19 ? ? C5 B DT 19 ? ? 119.73 115.20 4.53 0.60 N 32 1 C4 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 123.40 119.00 4.40 0.60 N 33 1 "O5'" B DT 24 ? ? "C5'" B DT 24 ? ? "C4'" B DT 24 ? ? 103.47 109.40 -5.93 0.80 N # _pdbx_phasing_MR.entry_id 5CDB _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 4.450 _pdbx_phasing_MR.d_res_low_rotation 29.080 _pdbx_phasing_MR.d_res_high_translation 4.450 _pdbx_phasing_MR.d_res_low_translation 29.080 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 50B O2 O N N 1 50B C2 C Y N 2 50B C3 C Y N 3 50B O3 O N N 4 50B C4 C Y N 5 50B O4 O N N 6 50B C5 C Y N 7 50B C6 C Y N 8 50B C1 C N N 9 50B O1 O N N 10 50B C19 C N N 11 50B C18 C Y N 12 50B C13 C Y N 13 50B C12 C Y N 14 50B C15 C Y N 15 50B C16 C Y N 16 50B C17 C Y N 17 50B C20 C N N 18 50B C11 C Y N 19 50B C10 C Y N 20 50B N1 N Y N 21 50B C14 C Y N 22 50B C7 C Y N 23 50B C8 C N N 24 50B C9 C N N 25 50B C21 C N N 26 50B C22 C N N 27 50B C23 C N N 28 50B C24 C N N 29 50B C25 C Y N 30 50B C26 C Y N 31 50B C27 C Y N 32 50B C28 C Y N 33 50B C29 C Y N 34 50B C30 C Y N 35 50B C31 C Y N 36 50B C32 C Y N 37 50B C33 C Y N 38 50B C34 C Y N 39 50B C35 C Y N 40 50B C36 C Y N 41 50B H1 H N N 42 50B H2 H N N 43 50B H3 H N N 44 50B H4 H N N 45 50B H5 H N N 46 50B H6 H N N 47 50B H7 H N N 48 50B H8 H N N 49 50B H9 H N N 50 50B H10 H N N 51 50B H11 H N N 52 50B H12 H N N 53 50B H13 H N N 54 50B H14 H N N 55 50B H15 H N N 56 50B H16 H N N 57 50B H17 H N N 58 50B H18 H N N 59 50B H19 H N N 60 50B H20 H N N 61 50B H21 H N N 62 50B H22 H N N 63 50B H23 H N N 64 50B H24 H N N 65 50B H25 H N N 66 50B H26 H N N 67 50B H27 H N N 68 50B H28 H N N 69 50B H29 H N N 70 50B H30 H N N 71 50B H31 H N N 72 50B H32 H N N 73 50B H33 H N N 74 50B H34 H N N 75 DA OP3 O N N 76 DA P P N N 77 DA OP1 O N N 78 DA OP2 O N N 79 DA "O5'" O N N 80 DA "C5'" C N N 81 DA "C4'" C N R 82 DA "O4'" O N N 83 DA "C3'" C N S 84 DA "O3'" O N N 85 DA "C2'" C N N 86 DA "C1'" C N R 87 DA N9 N Y N 88 DA C8 C Y N 89 DA N7 N Y N 90 DA C5 C Y N 91 DA C6 C Y N 92 DA N6 N N N 93 DA N1 N Y N 94 DA C2 C Y N 95 DA N3 N Y N 96 DA C4 C Y N 97 DA HOP3 H N N 98 DA HOP2 H N N 99 DA "H5'" H N N 100 DA "H5''" H N N 101 DA "H4'" H N N 102 DA "H3'" H N N 103 DA "HO3'" H N N 104 DA "H2'" H N N 105 DA "H2''" H N N 106 DA "H1'" H N N 107 DA H8 H N N 108 DA H61 H N N 109 DA H62 H N N 110 DA H2 H N N 111 DG OP3 O N N 112 DG P P N N 113 DG OP1 O N N 114 DG OP2 O N N 115 DG "O5'" O N N 116 DG "C5'" C N N 117 DG "C4'" C N R 118 DG "O4'" O N N 119 DG "C3'" C N S 120 DG "O3'" O N N 121 DG "C2'" C N N 122 DG "C1'" C N R 123 DG N9 N Y N 124 DG C8 C Y N 125 DG N7 N Y N 126 DG C5 C Y N 127 DG C6 C N N 128 DG O6 O N N 129 DG N1 N N N 130 DG C2 C N N 131 DG N2 N N N 132 DG N3 N N N 133 DG C4 C Y N 134 DG HOP3 H N N 135 DG HOP2 H N N 136 DG "H5'" H N N 137 DG "H5''" H N N 138 DG "H4'" H N N 139 DG "H3'" H N N 140 DG "HO3'" H N N 141 DG "H2'" H N N 142 DG "H2''" H N N 143 DG "H1'" H N N 144 DG H8 H N N 145 DG H1 H N N 146 DG H21 H N N 147 DG H22 H N N 148 DT OP3 O N N 149 DT P P N N 150 DT OP1 O N N 151 DT OP2 O N N 152 DT "O5'" O N N 153 DT "C5'" C N N 154 DT "C4'" C N R 155 DT "O4'" O N N 156 DT "C3'" C N S 157 DT "O3'" O N N 158 DT "C2'" C N N 159 DT "C1'" C N R 160 DT N1 N N N 161 DT C2 C N N 162 DT O2 O N N 163 DT N3 N N N 164 DT C4 C N N 165 DT O4 O N N 166 DT C5 C N N 167 DT C7 C N N 168 DT C6 C N N 169 DT HOP3 H N N 170 DT HOP2 H N N 171 DT "H5'" H N N 172 DT "H5''" H N N 173 DT "H4'" H N N 174 DT "H3'" H N N 175 DT "HO3'" H N N 176 DT "H2'" H N N 177 DT "H2''" H N N 178 DT "H1'" H N N 179 DT H3 H N N 180 DT H71 H N N 181 DT H72 H N N 182 DT H73 H N N 183 DT H6 H N N 184 HOH O O N N 185 HOH H1 H N N 186 HOH H2 H N N 187 K K K N N 188 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 50B C35 C36 doub Y N 1 50B C35 C34 sing Y N 2 50B C36 C31 sing Y N 3 50B C19 O3 sing N N 4 50B C8 C5 sing N N 5 50B C8 C9 sing N N 6 50B C34 C33 doub Y N 7 50B C16 C15 sing Y N 8 50B C16 C17 doub Y N 9 50B O4 C17 sing N N 10 50B O4 C20 sing N N 11 50B C15 C12 doub Y N 12 50B C17 C18 sing Y N 13 50B C31 C24 sing N N 14 50B C31 C32 doub Y N 15 50B C21 C11 sing N N 16 50B C21 C22 sing N N 17 50B C5 C4 sing Y N 18 50B C5 C6 doub Y N 19 50B C24 C25 sing N N 20 50B C24 C23 sing N N 21 50B C26 C25 doub Y N 22 50B C26 C27 sing Y N 23 50B C25 C30 sing Y N 24 50B C12 C11 sing Y N 25 50B C12 C13 sing Y N 26 50B C27 C28 doub Y N 27 50B C30 C29 doub Y N 28 50B C18 C13 doub Y N 29 50B C18 O3 sing N N 30 50B C4 C2 doub Y N 31 50B C28 C29 sing Y N 32 50B C11 C10 doub Y N 33 50B C13 C14 sing Y N 34 50B C10 N1 sing Y N 35 50B C10 C6 sing N N 36 50B C14 N1 doub Y N 37 50B N1 C9 sing N N 38 50B C6 C7 sing Y N 39 50B C2 O2 sing N N 40 50B C2 C3 sing Y N 41 50B O2 C1 sing N N 42 50B C33 C32 sing Y N 43 50B C7 C3 doub Y N 44 50B C3 O1 sing N N 45 50B C22 C23 sing N N 46 50B O1 C1 sing N N 47 50B C4 H1 sing N N 48 50B C1 H2 sing N N 49 50B C19 H3 sing N N 50 50B C19 H4 sing N N 51 50B C19 H5 sing N N 52 50B C15 H6 sing N N 53 50B C16 H7 sing N N 54 50B C20 H8 sing N N 55 50B C20 H9 sing N N 56 50B C20 H10 sing N N 57 50B C14 H11 sing N N 58 50B C7 H12 sing N N 59 50B C8 H13 sing N N 60 50B C8 H14 sing N N 61 50B C9 H15 sing N N 62 50B C9 H16 sing N N 63 50B C21 H17 sing N N 64 50B C21 H18 sing N N 65 50B C22 H19 sing N N 66 50B C22 H20 sing N N 67 50B C23 H21 sing N N 68 50B C23 H22 sing N N 69 50B C24 H23 sing N N 70 50B C26 H24 sing N N 71 50B C27 H25 sing N N 72 50B C28 H26 sing N N 73 50B C29 H27 sing N N 74 50B C30 H28 sing N N 75 50B C32 H29 sing N N 76 50B C33 H30 sing N N 77 50B C34 H31 sing N N 78 50B C35 H32 sing N N 79 50B C36 H33 sing N N 80 50B C1 H34 sing N N 81 DA OP3 P sing N N 82 DA OP3 HOP3 sing N N 83 DA P OP1 doub N N 84 DA P OP2 sing N N 85 DA P "O5'" sing N N 86 DA OP2 HOP2 sing N N 87 DA "O5'" "C5'" sing N N 88 DA "C5'" "C4'" sing N N 89 DA "C5'" "H5'" sing N N 90 DA "C5'" "H5''" sing N N 91 DA "C4'" "O4'" sing N N 92 DA "C4'" "C3'" sing N N 93 DA "C4'" "H4'" sing N N 94 DA "O4'" "C1'" sing N N 95 DA "C3'" "O3'" sing N N 96 DA "C3'" "C2'" sing N N 97 DA "C3'" "H3'" sing N N 98 DA "O3'" "HO3'" sing N N 99 DA "C2'" "C1'" sing N N 100 DA "C2'" "H2'" sing N N 101 DA "C2'" "H2''" sing N N 102 DA "C1'" N9 sing N N 103 DA "C1'" "H1'" sing N N 104 DA N9 C8 sing Y N 105 DA N9 C4 sing Y N 106 DA C8 N7 doub Y N 107 DA C8 H8 sing N N 108 DA N7 C5 sing Y N 109 DA C5 C6 sing Y N 110 DA C5 C4 doub Y N 111 DA C6 N6 sing N N 112 DA C6 N1 doub Y N 113 DA N6 H61 sing N N 114 DA N6 H62 sing N N 115 DA N1 C2 sing Y N 116 DA C2 N3 doub Y N 117 DA C2 H2 sing N N 118 DA N3 C4 sing Y N 119 DG OP3 P sing N N 120 DG OP3 HOP3 sing N N 121 DG P OP1 doub N N 122 DG P OP2 sing N N 123 DG P "O5'" sing N N 124 DG OP2 HOP2 sing N N 125 DG "O5'" "C5'" sing N N 126 DG "C5'" "C4'" sing N N 127 DG "C5'" "H5'" sing N N 128 DG "C5'" "H5''" sing N N 129 DG "C4'" "O4'" sing N N 130 DG "C4'" "C3'" sing N N 131 DG "C4'" "H4'" sing N N 132 DG "O4'" "C1'" sing N N 133 DG "C3'" "O3'" sing N N 134 DG "C3'" "C2'" sing N N 135 DG "C3'" "H3'" sing N N 136 DG "O3'" "HO3'" sing N N 137 DG "C2'" "C1'" sing N N 138 DG "C2'" "H2'" sing N N 139 DG "C2'" "H2''" sing N N 140 DG "C1'" N9 sing N N 141 DG "C1'" "H1'" sing N N 142 DG N9 C8 sing Y N 143 DG N9 C4 sing Y N 144 DG C8 N7 doub Y N 145 DG C8 H8 sing N N 146 DG N7 C5 sing Y N 147 DG C5 C6 sing N N 148 DG C5 C4 doub Y N 149 DG C6 O6 doub N N 150 DG C6 N1 sing N N 151 DG N1 C2 sing N N 152 DG N1 H1 sing N N 153 DG C2 N2 sing N N 154 DG C2 N3 doub N N 155 DG N2 H21 sing N N 156 DG N2 H22 sing N N 157 DG N3 C4 sing N N 158 DT OP3 P sing N N 159 DT OP3 HOP3 sing N N 160 DT P OP1 doub N N 161 DT P OP2 sing N N 162 DT P "O5'" sing N N 163 DT OP2 HOP2 sing N N 164 DT "O5'" "C5'" sing N N 165 DT "C5'" "C4'" sing N N 166 DT "C5'" "H5'" sing N N 167 DT "C5'" "H5''" sing N N 168 DT "C4'" "O4'" sing N N 169 DT "C4'" "C3'" sing N N 170 DT "C4'" "H4'" sing N N 171 DT "O4'" "C1'" sing N N 172 DT "C3'" "O3'" sing N N 173 DT "C3'" "C2'" sing N N 174 DT "C3'" "H3'" sing N N 175 DT "O3'" "HO3'" sing N N 176 DT "C2'" "C1'" sing N N 177 DT "C2'" "H2'" sing N N 178 DT "C2'" "H2''" sing N N 179 DT "C1'" N1 sing N N 180 DT "C1'" "H1'" sing N N 181 DT N1 C2 sing N N 182 DT N1 C6 sing N N 183 DT C2 O2 doub N N 184 DT C2 N3 sing N N 185 DT N3 C4 sing N N 186 DT N3 H3 sing N N 187 DT C4 O4 doub N N 188 DT C4 C5 sing N N 189 DT C5 C7 sing N N 190 DT C5 C6 doub N N 191 DT C7 H71 sing N N 192 DT C7 H72 sing N N 193 DT C7 H73 sing N N 194 DT C6 H6 sing N N 195 HOH O H1 sing N N 196 HOH O H2 sing N N 197 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5CDB 'parallel strands' 5CDB 'mismatched base pair' # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4P1D _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5CDB _atom_sites.fract_transf_matrix[1][1] 0.024312 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024312 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014044 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C K N O P # loop_