HEADER HYDROLASE 03-JUL-15 5CDF TITLE STRUCTURE AT 2.3 A OF THE ALPHA/BETA MONOMER OF THE F-ATPASE FROM TITLE 2 PARACOCCUS DENITRIFICANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP SYNTHASE F1 SECTOR SUBUNIT ALPHA,F-ATPASE SUBUNIT ALPHA; COMPND 5 EC: 3.6.3.14; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ATP SYNTHASE SUBUNIT BETA; COMPND 8 CHAIN: E; COMPND 9 SYNONYM: ATP SYNTHASE F1 SECTOR SUBUNIT BETA,F-ATPASE SUBUNIT BETA; COMPND 10 EC: 3.6.3.14 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS; SOURCE 3 ORGANISM_TAXID: 266; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS; SOURCE 6 ORGANISM_TAXID: 266 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.MORALES-RIOS,M.G.MONTGOMERY,A.G.W.LESLIE,J.J.GARCIA-TREJO, AUTHOR 2 J.E.WALKER REVDAT 3 10-JAN-24 5CDF 1 REMARK REVDAT 2 28-OCT-15 5CDF 1 JRNL REVDAT 1 07-OCT-15 5CDF 0 JRNL AUTH E.MORALES-RIOS,M.G.MONTGOMERY,A.G.LESLIE,J.J.GARCIA-TREJO, JRNL AUTH 2 J.E.WALKER JRNL TITL STRUCTURE OF A CATALYTIC DIMER OF THE ALPHA- AND JRNL TITL 2 BETA-SUBUNITS OF THE F-ATPASE FROM PARACOCCUS DENITRIFICANS JRNL TITL 3 AT 2.3 ANGSTROM RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 71 1309 2015 JRNL REFN ESSN 2053-230X JRNL PMID 26457523 JRNL DOI 10.1107/S2053230X15016076 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 46474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2427 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3554 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 178 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7112 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.40000 REMARK 3 B22 (A**2) : -1.31000 REMARK 3 B33 (A**2) : 2.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.350 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.212 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.361 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7268 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7151 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9833 ; 1.065 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16434 ; 0.851 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 942 ; 5.267 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 304 ;34.897 ;24.638 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1243 ;12.256 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ; 9.826 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1153 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8244 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1527 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3774 ; 0.887 ; 3.551 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3773 ; 0.888 ; 3.551 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4711 ; 1.630 ; 5.319 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5CDF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000210810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48901 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 33.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.52500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2JDI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 10,000, CADAVERINE, TRIS PH 7.8, REMARK 280 GLYCEROL, ATP, MICROBATCH, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.46000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ILE A 3 REMARK 465 GLN A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 ILE A 8 REMARK 465 SER A 9 REMARK 465 ALA A 10 REMARK 465 ILE A 11 REMARK 465 LEU A 12 REMARK 465 LYS A 13 REMARK 465 ASP A 14 REMARK 465 GLN A 15 REMARK 465 ILE A 16 REMARK 465 LYS A 17 REMARK 465 ASN A 18 REMARK 465 PHE A 19 REMARK 465 GLY A 20 REMARK 465 GLN A 21 REMARK 465 ASP A 22 REMARK 465 ALA A 23 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 GLU E 3 REMARK 465 ALA E 274 REMARK 465 VAL E 275 REMARK 465 GLY E 276 REMARK 465 TYR E 277 REMARK 465 GLN E 278 REMARK 465 ASP E 315 REMARK 465 PRO E 316 REMARK 465 ALA E 317 REMARK 465 PRO E 318 REMARK 465 ALA E 319 REMARK 465 ALA E 470 REMARK 465 ALA E 471 REMARK 465 ASP E 472 REMARK 465 ALA E 473 REMARK 465 ALA E 474 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 25 -46.25 -155.00 REMARK 500 ARG A 192 55.34 -111.75 REMARK 500 ALA A 194 -48.27 -173.87 REMARK 500 ASP A 348 49.47 -95.30 REMARK 500 LYS A 477 50.56 -142.63 REMARK 500 ASP E 21 -60.96 -103.31 REMARK 500 ALA E 124 150.27 68.99 REMARK 500 ASN E 297 51.66 -98.19 REMARK 500 PRO E 309 75.15 -65.86 REMARK 500 ALA E 323 -70.07 -153.70 REMARK 500 ALA E 343 48.58 -81.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 503 DBREF 5CDF A 1 511 UNP A1B8N8 ATPA_PARDP 1 511 DBREF 5CDF E 1 474 UNP A1B8P0 ATPB_PARDP 1 474 SEQRES 1 A 511 MET GLY ILE GLN ALA ALA GLU ILE SER ALA ILE LEU LYS SEQRES 2 A 511 ASP GLN ILE LYS ASN PHE GLY GLN ASP ALA GLU VAL ALA SEQRES 3 A 511 GLU VAL GLY GLN VAL LEU SER VAL GLY ASP GLY ILE ALA SEQRES 4 A 511 ARG VAL TYR GLY LEU ASP LYS VAL GLN ALA GLY GLU MET SEQRES 5 A 511 VAL GLU PHE PRO GLY GLY ILE ARG GLY MET VAL LEU ASN SEQRES 6 A 511 LEU GLU THR ASP ASN VAL GLY VAL VAL ILE PHE GLY ASP SEQRES 7 A 511 ASP ARG ASP ILE LYS GLU GLY ASP THR VAL LYS ARG THR SEQRES 8 A 511 GLY ALA ILE VAL GLU VAL PRO ALA GLY LYS GLU LEU LEU SEQRES 9 A 511 GLY ARG VAL VAL ASP ALA LEU GLY ASN PRO ILE ASP GLY SEQRES 10 A 511 LYS GLY PRO LEU ASN ALA SER GLU ARG ARG ILE ALA ASP SEQRES 11 A 511 VAL LYS ALA PRO GLY ILE MET PRO ARG LYS SER VAL HIS SEQRES 12 A 511 GLU PRO MET ALA THR GLY LEU LYS SER VAL ASP ALA MET SEQRES 13 A 511 ILE PRO VAL GLY ARG GLY GLN ARG GLU LEU ILE ILE GLY SEQRES 14 A 511 ASP ARG GLN THR GLY LYS THR ALA ILE ALA LEU ASP THR SEQRES 15 A 511 ILE LEU ASN GLN ALA ASN TYR ASN GLY ARG GLU ALA ASP SEQRES 16 A 511 GLY MET LYS THR LEU HIS CYS ILE TYR VAL ALA VAL GLY SEQRES 17 A 511 GLN LYS ARG SER THR VAL ALA GLN LEU VAL LYS LYS LEU SEQRES 18 A 511 GLU GLU THR GLY ALA MET ALA TYR THR THR VAL VAL ALA SEQRES 19 A 511 ALA THR ALA SER ASP PRO ALA PRO MET GLN TYR LEU ALA SEQRES 20 A 511 PRO TYR SER ALA THR ALA MET GLY GLU TYR PHE ARG ASP SEQRES 21 A 511 ASN GLY MET ASP ALA LEU ILE ILE TYR ASP ASP LEU SER SEQRES 22 A 511 LYS GLN ALA VAL ALA TYR ARG GLN MET SER LEU LEU LEU SEQRES 23 A 511 ARG ARG PRO PRO GLY ARG GLU ALA TYR PRO GLY ASP VAL SEQRES 24 A 511 PHE TYR LEU HIS SER ARG LEU LEU GLU ARG SER ALA LYS SEQRES 25 A 511 LEU ASN GLU ALA ASN GLY ALA GLY SER LEU THR ALA LEU SEQRES 26 A 511 PRO ILE ILE GLU THR GLN ALA GLY ASP VAL SER ALA TYR SEQRES 27 A 511 ILE PRO THR ASN VAL ILE SER ILE THR ASP GLY GLN ILE SEQRES 28 A 511 PHE LEU GLU THR GLU LEU PHE PHE GLN GLY ILE ARG PRO SEQRES 29 A 511 ALA VAL ASN THR GLY LEU SER VAL SER ARG VAL GLY SER SEQRES 30 A 511 ALA ALA GLN THR LYS ALA MET LYS SER VAL ALA GLY PRO SEQRES 31 A 511 VAL LYS LEU GLU LEU ALA GLN TYR ARG GLU MET ALA ALA SEQRES 32 A 511 PHE ALA GLN PHE GLY SER ASP LEU ASP ALA ALA THR GLN SEQRES 33 A 511 LYS LEU LEU ASN ARG GLY ALA ARG LEU THR GLU LEU MET SEQRES 34 A 511 LYS GLN PRO GLN TYR SER PRO LEU THR ASN ALA GLU ILE SEQRES 35 A 511 VAL ILE VAL ILE TYR ALA GLY THR LYS GLY TYR LEU ASP SEQRES 36 A 511 GLY ILE PRO VAL ARG ASP VAL THR LYS TRP GLU HIS GLY SEQRES 37 A 511 LEU LEU GLN TYR LEU ARG ASN GLN LYS ALA ASP LEU LEU SEQRES 38 A 511 GLU ASP MET THR LYS ASN ASP ARG LYS VAL ALA GLY GLU SEQRES 39 A 511 LEU GLU ASP ALA ILE LYS ALA ALA LEU ASP GLY TYR ALA SEQRES 40 A 511 LYS THR TYR ALA SEQRES 1 E 474 MET ALA GLU ALA ASN GLY LYS ILE THR GLN VAL ILE GLY SEQRES 2 E 474 ALA VAL VAL ASP VAL GLN PHE ASP GLY GLN LEU PRO ALA SEQRES 3 E 474 ILE LEU ASN ALA LEU GLU THR GLU ASN ASN GLY LYS ARG SEQRES 4 E 474 LEU VAL LEU GLU VAL ALA GLN HIS LEU GLY GLU ASN THR SEQRES 5 E 474 VAL ARG THR ILE ALA MET ASP ALA THR GLU GLY LEU VAL SEQRES 6 E 474 ARG GLY LEU PRO VAL LYS ASP THR GLY GLY PRO ILE MET SEQRES 7 E 474 VAL PRO VAL GLY ASP ALA THR LEU GLY ARG ILE LEU ASN SEQRES 8 E 474 VAL VAL GLY GLU PRO VAL ASP GLU GLY GLY PRO VAL GLU SEQRES 9 E 474 ALA THR GLN THR ARG ALA ILE HIS GLN GLN ALA PRO ASP SEQRES 10 E 474 PHE ALA ALA GLN ALA THR ALA SER GLU ILE LEU VAL THR SEQRES 11 E 474 GLY ILE LYS VAL ILE ASP LEU LEU ALA PRO TYR SER LYS SEQRES 12 E 474 GLY GLY LYS ILE GLY LEU PHE GLY GLY ALA GLY VAL GLY SEQRES 13 E 474 LYS THR VAL LEU ILE MET GLU LEU ILE ASN ASN ILE ALA SEQRES 14 E 474 LYS VAL HIS SER GLY TYR SER VAL PHE ALA GLY VAL GLY SEQRES 15 E 474 GLU ARG THR ARG GLU GLY ASN ASP LEU TYR HIS GLU MET SEQRES 16 E 474 VAL GLU SER GLY VAL ILE LYS PRO ASP ASP LEU SER LYS SEQRES 17 E 474 SER GLN VAL ALA LEU VAL TYR GLY GLN MET ASN GLU PRO SEQRES 18 E 474 PRO GLY ALA ARG MET ARG VAL ALA LEU THR GLY LEU THR SEQRES 19 E 474 VAL ALA GLU GLN PHE ARG ASP ALA THR GLY THR ASP VAL SEQRES 20 E 474 LEU PHE PHE VAL ASP ASN ILE PHE ARG PHE THR GLN ALA SEQRES 21 E 474 GLY SER GLU VAL SER ALA LEU LEU GLY ARG ILE PRO SER SEQRES 22 E 474 ALA VAL GLY TYR GLN PRO THR LEU ALA THR ASP MET GLY SEQRES 23 E 474 ALA MET GLN GLU ARG ILE THR SER THR LYS ASN GLY SER SEQRES 24 E 474 ILE THR SER ILE GLN ALA VAL TYR VAL PRO ALA ASP ASP SEQRES 25 E 474 LEU THR ASP PRO ALA PRO ALA THR THR PHE ALA HIS LEU SEQRES 26 E 474 ASP ALA THR THR VAL LEU SER ARG ALA ILE SER GLU LEU SEQRES 27 E 474 GLY ILE TYR PRO ALA VAL ASP PRO LEU ASP SER ASN SER SEQRES 28 E 474 ARG ILE LEU ASP PRO ALA VAL VAL GLY GLU GLU HIS TYR SEQRES 29 E 474 GLN VAL ALA ARG ASP VAL GLN GLY ILE LEU GLN LYS TYR SEQRES 30 E 474 LYS SER LEU GLN ASP ILE ILE ALA ILE LEU GLY MET ASP SEQRES 31 E 474 GLU LEU SER GLU GLU ASP LYS LEU THR VAL ALA ARG ALA SEQRES 32 E 474 ARG LYS ILE GLN ARG PHE LEU SER GLN PRO PHE ASP VAL SEQRES 33 E 474 ALA LYS VAL PHE THR GLY SER ASP GLY VAL GLN VAL PRO SEQRES 34 E 474 LEU GLU ASP THR ILE LYS SER PHE LYS ALA VAL VAL ALA SEQRES 35 E 474 GLY GLU TYR ASP HIS LEU PRO GLU ALA ALA PHE TYR MET SEQRES 36 E 474 VAL GLY GLY ILE GLU ASP VAL LYS ALA LYS ALA GLN ARG SEQRES 37 E 474 LEU ALA ALA ASP ALA ALA HET GOL A 601 6 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET GOL A 605 6 HET PO4 A 606 5 HET GOL E 501 6 HET GOL E 502 6 HET GOL E 503 6 HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 8(C3 H8 O3) FORMUL 8 PO4 O4 P 3- FORMUL 12 HOH *79(H2 O) HELIX 1 AA1 GLY A 100 LEU A 104 5 5 HELIX 2 AA2 LEU A 150 ILE A 157 1 8 HELIX 3 AA3 GLY A 174 GLN A 186 1 13 HELIX 4 AA4 ALA A 187 TYR A 189 5 3 HELIX 5 AA5 LYS A 210 GLY A 225 1 16 HELIX 6 AA6 ALA A 226 ALA A 228 5 3 HELIX 7 AA7 PRO A 240 ASN A 261 1 22 HELIX 8 AA8 ASP A 271 LEU A 286 1 16 HELIX 9 AA9 GLY A 291 TYR A 295 5 5 HELIX 10 AB1 ASP A 298 ARG A 309 1 12 HELIX 11 AB2 ASN A 314 GLY A 318 5 5 HELIX 12 AB3 ALA A 337 SER A 345 1 9 HELIX 13 AB4 GLU A 354 GLN A 360 1 7 HELIX 14 AB5 VAL A 375 GLN A 380 5 6 HELIX 15 AB6 THR A 381 GLY A 389 1 9 HELIX 16 AB7 PRO A 390 GLN A 406 1 17 HELIX 17 AB8 ASP A 412 LYS A 430 1 19 HELIX 18 AB9 THR A 438 LYS A 451 1 14 HELIX 19 AC1 PRO A 458 ARG A 460 5 3 HELIX 20 AC2 ASP A 461 LYS A 477 1 17 HELIX 21 AC3 LYS A 477 ASN A 487 1 11 HELIX 22 AC4 GLY A 493 ALA A 511 1 19 HELIX 23 AC5 GLY E 82 LEU E 86 5 5 HELIX 24 AC6 ILE E 132 ALA E 139 1 8 HELIX 25 AC7 GLY E 156 SER E 173 1 18 HELIX 26 AC8 ARG E 184 SER E 198 1 15 HELIX 27 AC9 ASP E 205 SER E 209 5 5 HELIX 28 AD1 PRO E 221 GLY E 244 1 24 HELIX 29 AD2 ASN E 253 LEU E 268 1 16 HELIX 30 AD3 ALA E 287 ILE E 292 1 6 HELIX 31 AD4 SER E 332 LEU E 338 1 7 HELIX 32 AD5 ASP E 355 GLY E 360 1 6 HELIX 33 AD6 GLY E 360 LEU E 380 1 21 HELIX 34 AD7 LEU E 380 LEU E 387 1 8 HELIX 35 AD8 SER E 393 SER E 411 1 19 HELIX 36 AD9 ALA E 417 GLY E 422 1 6 HELIX 37 AE1 PRO E 429 GLY E 443 1 15 HELIX 38 AE2 PRO E 449 TYR E 454 5 6 HELIX 39 AE3 GLY E 458 LEU E 469 1 12 SHEET 1 AA114 ARG A 60 LEU A 66 0 SHEET 2 AA114 GLU A 51 GLU A 54 -1 N VAL A 53 O GLY A 61 SHEET 3 AA114 THR A 87 ILE A 94 -1 O LYS A 89 N GLU A 54 SHEET 4 AA114 VAL A 28 GLY A 35 -1 N GLY A 29 O VAL A 88 SHEET 5 AA114 ILE A 38 GLY A 43 -1 O TYR A 42 N GLN A 30 SHEET 6 AA114 VAL A 71 ILE A 75 -1 O VAL A 73 N ALA A 39 SHEET 7 AA114 ARG A 60 LEU A 66 -1 N MET A 62 O VAL A 74 SHEET 8 AA114 GLY E 6 ILE E 12 -1 O VAL E 11 N LEU A 66 SHEET 9 AA114 PRO E 69 ASP E 72 -1 O VAL E 70 N GLY E 6 SHEET 10 AA114 ALA E 30 ASN E 35 -1 N GLU E 32 O LYS E 71 SHEET 11 AA114 LYS E 38 HIS E 47 -1 O LEU E 42 N LEU E 31 SHEET 12 AA114 THR E 52 ALA E 57 -1 O ARG E 54 N ALA E 45 SHEET 13 AA114 VAL E 15 PHE E 20 -1 N VAL E 18 O VAL E 53 SHEET 14 AA114 GLY E 6 ILE E 12 -1 N ILE E 12 O VAL E 15 SHEET 1 AA2 2 GLU A 96 PRO A 98 0 SHEET 2 AA2 2 ARG A 126 ILE A 128 -1 O ARG A 127 N VAL A 97 SHEET 1 AA3 6 VAL A 107 VAL A 108 0 SHEET 2 AA3 6 THR A 230 ALA A 235 1 O VAL A 232 N VAL A 108 SHEET 3 AA3 6 LEU A 200 VAL A 207 1 N ALA A 206 O ALA A 235 SHEET 4 AA3 6 ASP A 264 ASP A 270 1 O LEU A 266 N HIS A 201 SHEET 5 AA3 6 SER A 321 GLU A 329 1 O THR A 323 N ILE A 267 SHEET 6 AA3 6 ALA A 311 LYS A 312 -1 N ALA A 311 O LEU A 322 SHEET 1 AA4 8 VAL A 107 VAL A 108 0 SHEET 2 AA4 8 THR A 230 ALA A 235 1 O VAL A 232 N VAL A 108 SHEET 3 AA4 8 LEU A 200 VAL A 207 1 N ALA A 206 O ALA A 235 SHEET 4 AA4 8 ASP A 264 ASP A 270 1 O LEU A 266 N HIS A 201 SHEET 5 AA4 8 SER A 321 GLU A 329 1 O THR A 323 N ILE A 267 SHEET 6 AA4 8 LEU A 166 GLY A 169 1 N ILE A 167 O PRO A 326 SHEET 7 AA4 8 GLY A 349 LEU A 353 1 O LEU A 353 N ILE A 168 SHEET 8 AA4 8 VAL A 372 SER A 373 -1 O VAL A 372 N GLN A 350 SHEET 1 AA5 2 MET E 78 PRO E 80 0 SHEET 2 AA5 2 THR E 108 ALA E 110 -1 O ARG E 109 N VAL E 79 SHEET 1 AA6 6 ILE E 89 LEU E 90 0 SHEET 2 AA6 6 VAL E 211 GLY E 216 1 O TYR E 215 N LEU E 90 SHEET 3 AA6 6 SER E 176 VAL E 181 1 N GLY E 180 O GLY E 216 SHEET 4 AA6 6 ASP E 246 ASP E 252 1 O PHE E 250 N VAL E 177 SHEET 5 AA6 6 GLY E 298 ALA E 305 1 O SER E 299 N VAL E 247 SHEET 6 AA6 6 SER E 294 THR E 295 -1 N THR E 295 O GLY E 298 SHEET 1 AA7 8 ILE E 89 LEU E 90 0 SHEET 2 AA7 8 VAL E 211 GLY E 216 1 O TYR E 215 N LEU E 90 SHEET 3 AA7 8 SER E 176 VAL E 181 1 N GLY E 180 O GLY E 216 SHEET 4 AA7 8 ASP E 246 ASP E 252 1 O PHE E 250 N VAL E 177 SHEET 5 AA7 8 GLY E 298 ALA E 305 1 O SER E 299 N VAL E 247 SHEET 6 AA7 8 LYS E 146 PHE E 150 1 N ILE E 147 O SER E 302 SHEET 7 AA7 8 ALA E 327 VAL E 330 1 O THR E 329 N PHE E 150 SHEET 8 AA7 8 ASN E 350 SER E 351 -1 O ASN E 350 N THR E 328 SHEET 1 AA8 2 ILE E 127 LEU E 128 0 SHEET 2 AA8 2 TYR E 141 SER E 142 -1 O TYR E 141 N LEU E 128 CISPEP 1 ASP A 270 ASP A 271 0 2.03 CISPEP 2 ARG A 363 PRO A 364 0 4.11 CISPEP 3 ASP E 252 ASN E 253 0 1.70 CISPEP 4 TYR E 341 PRO E 342 0 -3.71 SITE 1 AC1 3 ASP A 410 LEU A 411 GLN A 416 SITE 1 AC2 6 ASP A 130 VAL A 131 LYS A 132 TYR A 301 SITE 2 AC2 6 ALA E 60 GLU E 62 SITE 1 AC3 7 ALA A 177 ASP A 181 ARG A 363 PRO A 364 SITE 2 AC3 7 GLN A 431 GLN A 433 HOH A 712 SITE 1 AC4 2 GLN A 281 HOH A 718 SITE 1 AC5 6 ALA A 155 MET A 156 SER A 377 GLN A 380 SITE 2 AC5 6 LYS A 392 HOH A 709 SITE 1 AC6 6 ASP A 170 GLN A 172 THR A 173 GLY A 174 SITE 2 AC6 6 LYS A 175 THR A 176 SITE 1 AC7 5 ILE E 12 VAL E 15 ARG E 54 LEU E 267 SITE 2 AC7 5 LEU E 268 SITE 1 AC8 4 THR A 68 GLN E 10 ASP E 17 GLY E 49 SITE 1 AC9 5 ASP E 83 ALA E 84 LEU E 86 ARG E 88 SITE 2 AC9 5 SER E 207 CRYST1 72.550 102.920 89.180 90.00 112.67 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013784 0.000000 0.005757 0.00000 SCALE2 0.000000 0.009716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012152 0.00000