HEADER HYDROLASE INHIBITOR 06-JUL-15 5CDZ TITLE CRYSTAL STRUCTURE OF CONSERPIN IN THE LATENT STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERPIN IN THE LATENT STATE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE PROTEASE INHIBITOR, AGGREGATION RESISTANT, CONSENSUS DESIGN, KEYWDS 2 STABILITY, LATENT STATE, HYDROLASE, HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR B.T.POREBSKI,S.MCGOWAN,S.KELEHER,A.M.BUCKLE REVDAT 3 27-SEP-23 5CDZ 1 REMARK REVDAT 2 05-OCT-16 5CDZ 1 JRNL REVDAT 1 20-JUL-16 5CDZ 0 JRNL AUTH B.T.POREBSKI,S.KELEHER,J.J.HOLLINS,A.A.NICKSON, JRNL AUTH 2 E.M.MARIJANOVIC,N.A.BORG,M.G.COSTA,M.A.PEARCE,W.DAI,L.ZHU, JRNL AUTH 3 J.A.IRVING,D.E.HOKE,I.KASS,J.C.WHISSTOCK,S.P.BOTTOMLEY, JRNL AUTH 4 G.I.WEBB,S.MCGOWAN,A.M.BUCKLE JRNL TITL SMOOTHING A RUGGED PROTEIN FOLDING LANDSCAPE BY JRNL TITL 2 SEQUENCE-BASED REDESIGN. JRNL REF SCI REP V. 6 33958 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27667094 JRNL DOI 10.1038/SREP33958 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 65500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.2910 - 4.1770 0.99 2626 158 0.1563 0.1862 REMARK 3 2 4.1770 - 3.3164 1.00 2620 139 0.1335 0.1722 REMARK 3 3 3.3164 - 2.8975 1.00 2610 150 0.1540 0.1667 REMARK 3 4 2.8975 - 2.6327 1.00 2606 132 0.1584 0.2064 REMARK 3 5 2.6327 - 2.4440 1.00 2609 124 0.1553 0.1734 REMARK 3 6 2.4440 - 2.3000 1.00 2590 145 0.1503 0.1706 REMARK 3 7 2.3000 - 2.1848 1.00 2614 127 0.1466 0.1715 REMARK 3 8 2.1848 - 2.0897 1.00 2591 128 0.1500 0.1659 REMARK 3 9 2.0897 - 2.0093 1.00 2606 138 0.1509 0.1848 REMARK 3 10 2.0093 - 1.9400 1.00 2578 144 0.1568 0.1669 REMARK 3 11 1.9400 - 1.8793 1.00 2579 129 0.1613 0.1929 REMARK 3 12 1.8793 - 1.8256 1.00 2627 140 0.1608 0.1820 REMARK 3 13 1.8256 - 1.7775 1.00 2568 133 0.1574 0.1946 REMARK 3 14 1.7775 - 1.7342 1.00 2579 137 0.1691 0.2026 REMARK 3 15 1.7342 - 1.6947 1.00 2567 134 0.1694 0.1886 REMARK 3 16 1.6947 - 1.6587 1.00 2572 143 0.1721 0.2063 REMARK 3 17 1.6587 - 1.6255 1.00 2610 149 0.1758 0.2248 REMARK 3 18 1.6255 - 1.5948 1.00 2559 138 0.1720 0.2166 REMARK 3 19 1.5948 - 1.5663 1.00 2565 139 0.1728 0.2173 REMARK 3 20 1.5663 - 1.5398 1.00 2629 124 0.1835 0.2129 REMARK 3 21 1.5398 - 1.5150 1.00 2550 164 0.1863 0.2106 REMARK 3 22 1.5150 - 1.4917 1.00 2531 144 0.1972 0.2455 REMARK 3 23 1.4917 - 1.4697 1.00 2616 129 0.2099 0.2030 REMARK 3 24 1.4697 - 1.4490 1.00 2579 131 0.2356 0.2851 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2931 REMARK 3 ANGLE : 1.568 3974 REMARK 3 CHIRALITY : 0.134 450 REMARK 3 PLANARITY : 0.012 509 REMARK 3 DIHEDRAL : 12.632 1098 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 35.2246 -8.5609 -4.4714 REMARK 3 T TENSOR REMARK 3 T11: 0.1060 T22: 0.0975 REMARK 3 T33: 0.1187 T12: -0.0384 REMARK 3 T13: -0.0053 T23: -0.0310 REMARK 3 L TENSOR REMARK 3 L11: 0.8185 L22: 0.8283 REMARK 3 L33: 1.7240 L12: -0.1619 REMARK 3 L13: 0.5528 L23: -0.2757 REMARK 3 S TENSOR REMARK 3 S11: -0.0386 S12: -0.0148 S13: 0.0438 REMARK 3 S21: 0.0566 S22: -0.0254 S23: 0.0396 REMARK 3 S31: -0.1541 S32: 0.0391 S33: 0.0558 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211457. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SILICON DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65513 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.449 REMARK 200 RESOLUTION RANGE LOW (A) : 33.282 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 38.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CDX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 8.0, 0.2 M AMMONIUM REMARK 280 ACETATE, 35% V/V MPD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.81333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.90667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.81333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.90667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 GLU A -9 REMARK 465 ASN A -8 REMARK 465 LEU A -7 REMARK 465 TYR A -6 REMARK 465 PHE A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 1 OG REMARK 470 HIS A 2 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 ASP A 25 CG OD1 OD2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 GLN A 112 CD OE1 NE2 REMARK 470 ASP A 147 CG OD1 OD2 REMARK 470 VAL A 182 CG1 CG2 REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 THR A 186 OG1 CG2 REMARK 470 VAL A 188 CG1 CG2 REMARK 470 GLU A 273 CG CD OE1 OE2 REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 PHE A 334 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 335 CG CD CE NZ REMARK 470 ASP A 337 CG OD1 OD2 REMARK 470 LYS A 348 CG CD CE NZ REMARK 470 ASN A 360 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 559 O HOH A 797 2.06 REMARK 500 OE1 GLU A 105 O HOH A 501 2.07 REMARK 500 OD1 ASN A 138 O HOH A 502 2.08 REMARK 500 O HOH A 667 O HOH A 702 2.12 REMARK 500 O HOH A 554 O HOH A 801 2.13 REMARK 500 O HOH A 704 O HOH A 712 2.14 REMARK 500 O HOH A 638 O HOH A 725 2.19 REMARK 500 O HOH A 757 O HOH A 762 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 506 O HOH A 787 5554 2.10 REMARK 500 O HOH A 827 O HOH A 830 6555 2.12 REMARK 500 O HOH A 506 O HOH A 655 5554 2.18 REMARK 500 O HOH A 673 O HOH A 801 5554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 336 N - CA - C ANGL. DEV. = 19.9 DEGREES REMARK 500 PRO A 361 C - N - CA ANGL. DEV. = 13.0 DEGREES REMARK 500 PRO A 361 C - N - CD ANGL. DEV. = -29.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 25 52.14 -107.32 REMARK 500 LEU A 148 119.53 36.80 REMARK 500 ASN A 219 50.53 -92.82 REMARK 500 PHE A 334 96.65 12.72 REMARK 500 ALA A 336 125.18 140.83 REMARK 500 VAL A 359 35.95 -75.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 360 PRO A 361 -116.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 844 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 845 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 846 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 847 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A 848 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A 849 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A 850 DISTANCE = 7.39 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CDX RELATED DB: PDB REMARK 900 5CDX IS THE SAME PROTEIN IN THE NATIVE STATE REMARK 900 RELATED ID: 5CE0 RELATED DB: PDB REMARK 900 RELATED ID: 5CE2 RELATED DB: PDB DBREF 5CDZ A -16 361 PDB 5CDZ 5CDZ -16 361 SEQRES 1 A 378 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 A 378 GLY ALA ALA SER SER HIS LYS LEU ALA GLU ALA ASN THR SEQRES 3 A 378 ASP PHE ALA PHE SER LEU TYR ARG GLU LEU ALA LYS SER SEQRES 4 A 378 SER PRO ASP LYS ASN ILE PHE PHE SER PRO VAL SER ILE SEQRES 5 A 378 SER SER ALA LEU ALA MET LEU SER LEU GLY ALA LYS GLY SEQRES 6 A 378 ASP THR HIS THR GLN ILE LEU GLU GLY LEU GLY PHE ASN SEQRES 7 A 378 SER GLU ALA ASP ILE HIS GLN GLY PHE GLN HIS LEU LEU SEQRES 8 A 378 GLN THR LEU ASN ARG PRO LYS GLY LEU GLN LEU LYS THR SEQRES 9 A 378 ALA ASN GLY LEU PHE VAL ASP LYS SER LEU LYS LEU LEU SEQRES 10 A 378 ASP SER PHE LEU GLU ASP SER LYS LYS LEU TYR GLN ALA SEQRES 11 A 378 GLU ALA PHE SER VAL ASP PHE ASP PRO GLU GLU ALA LYS SEQRES 12 A 378 LYS GLN ILE ASN ASP TRP VAL GLU LYS GLN THR ASN GLY SEQRES 13 A 378 LYS ILE LYS ASP LEU LEU LYS ASP LEU ASP SER ASP THR SEQRES 14 A 378 VAL LEU VAL LEU VAL ASN ALA ILE TYR PHE LYS GLY LYS SEQRES 15 A 378 TRP LYS LYS PRO PHE ASP PRO GLU ASN THR LYS GLU GLU SEQRES 16 A 378 ASP PHE HIS VAL ASP GLU LYS THR THR VAL LYS VAL PRO SEQRES 17 A 378 MET MET SER GLN LYS GLY LYS PHE TYR TYR TYR HIS ASP SEQRES 18 A 378 ASP GLU LEU SER CYS LYS VAL LEU GLU LEU PRO TYR LYS SEQRES 19 A 378 GLY ASN ALA SER MET LEU ILE ILE LEU PRO ASP GLU GLY SEQRES 20 A 378 GLY LEU GLN HIS LEU GLU GLN SER LEU THR PRO GLU THR SEQRES 21 A 378 LEU SER LYS TRP LEU LYS SER LEU THR ARG ARG SER VAL SEQRES 22 A 378 GLU LEU TYR LEU PRO LYS PHE LYS ILE GLU GLY THR TYR SEQRES 23 A 378 ASP LEU LYS GLU VAL LEU SER ASN LEU GLY ILE THR ASP SEQRES 24 A 378 LEU PHE SER PRO GLY ALA ASP LEU SER GLY ILE THR GLU SEQRES 25 A 378 GLU LYS LEU TYR VAL SER LYS ALA VAL HIS LYS ALA VAL SEQRES 26 A 378 LEU GLU VAL ASN GLU GLU GLY THR GLU ALA ALA ALA ALA SEQRES 27 A 378 THR GLY VAL GLU ILE VAL PRO ARG SER PRO PRO GLU PHE SEQRES 28 A 378 LYS ALA ASP ARG PRO PHE LEU PHE LEU ILE ARG GLU ASN SEQRES 29 A 378 LYS THR GLY SER ILE LEU PHE MET GLY LYS VAL VAL ASN SEQRES 30 A 378 PRO HET GOL A 401 13 HET GOL A 402 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 HOH *350(H2 O) HELIX 1 AA1 SER A 1 SER A 23 1 23 HELIX 2 AA2 SER A 31 LEU A 44 1 14 HELIX 3 AA3 LYS A 47 LEU A 58 1 12 HELIX 4 AA4 ILE A 66 ASN A 78 1 13 HELIX 5 AA5 LEU A 100 GLN A 112 1 13 HELIX 6 AA6 ASP A 121 THR A 137 1 17 HELIX 7 AA7 ASP A 171 THR A 175 5 5 HELIX 8 AA8 GLY A 231 LEU A 239 1 9 HELIX 9 AA9 THR A 240 LEU A 251 1 12 HELIX 10 AB1 LEU A 271 LEU A 278 1 8 HELIX 11 AB2 THR A 281 SER A 285 5 5 SHEET 1 AA1 7 ILE A 28 PHE A 30 0 SHEET 2 AA1 7 ILE A 352 VAL A 358 -1 O MET A 355 N PHE A 30 SHEET 3 AA1 7 PHE A 340 GLU A 346 -1 N PHE A 340 O VAL A 358 SHEET 4 AA1 7 ALA A 220 PRO A 227 -1 N ILE A 225 O LEU A 341 SHEET 5 AA1 7 CYS A 209 PRO A 215 -1 N LEU A 214 O MET A 222 SHEET 6 AA1 7 THR A 187 ASP A 204 -1 N TYR A 202 O VAL A 211 SHEET 7 AA1 7 LYS A 176 HIS A 181 -1 N PHE A 180 O VAL A 188 SHEET 1 AA2 7 ILE A 28 PHE A 30 0 SHEET 2 AA2 7 ILE A 352 VAL A 358 -1 O MET A 355 N PHE A 30 SHEET 3 AA2 7 PHE A 340 GLU A 346 -1 N PHE A 340 O VAL A 358 SHEET 4 AA2 7 ALA A 220 PRO A 227 -1 N ILE A 225 O LEU A 341 SHEET 5 AA2 7 CYS A 209 PRO A 215 -1 N LEU A 214 O MET A 222 SHEET 6 AA2 7 THR A 187 ASP A 204 -1 N TYR A 202 O VAL A 211 SHEET 7 AA2 7 THR A 252 PRO A 261 -1 O VAL A 256 N GLY A 197 SHEET 1 AA3 6 GLU A 114 VAL A 118 0 SHEET 2 AA3 6 GLN A 84 ASP A 94 1 N VAL A 93 O PHE A 116 SHEET 3 AA3 6 LEU A 154 LYS A 165 -1 O VAL A 157 N GLY A 90 SHEET 4 AA3 6 GLY A 315 VAL A 324 -1 O VAL A 324 N LEU A 156 SHEET 5 AA3 6 ALA A 303 VAL A 311 -1 N VAL A 308 O ALA A 319 SHEET 6 AA3 6 PHE A 263 ASP A 270 -1 N PHE A 263 O VAL A 311 SITE 1 AC1 5 ASP A 10 PHE A 11 SER A 14 GLY A 57 SITE 2 AC1 5 GLY A 59 SITE 1 AC2 5 LEU A 104 PHE A 116 SER A 117 HOH A 569 SITE 2 AC2 5 HOH A 699 CRYST1 101.679 101.679 62.720 90.00 90.00 120.00 P 62 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009835 0.005678 0.000000 0.00000 SCALE2 0.000000 0.011356 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015944 0.00000