data_5CE7 # _entry.id 5CE7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5CE7 WWPDB D_1000211399 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5CE7 _pdbx_database_status.recvd_initial_deposition_date 2015-07-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Muehlbacher, W.' 1 'Mayer, A.' 2 'Sun, M.' 3 'Remmert, M.' 4 'Cheung, A.C.' 5 'Niesser, J.' 6 'Soeding, J.' 7 'Cramer, P.' 8 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proteins _citation.journal_id_ASTM PSFGEY _citation.journal_id_CSD 0867 _citation.journal_id_ISSN 1097-0134 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 83 _citation.language ? _citation.page_first 1849 _citation.page_last 1858 _citation.title 'Structure of Ctk3, a subunit of the RNA polymerase II CTD kinase complex, reveals a noncanonical CTD-interacting domain fold.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/prot.24869 _citation.pdbx_database_id_PubMed 26219431 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Muhlbacher, W.' 1 primary 'Mayer, A.' 2 primary 'Sun, M.' 3 primary 'Remmert, M.' 4 primary 'Cheung, A.C.' 5 primary 'Niesser, J.' 6 primary 'Soeding, J.' 7 primary 'Cramer, P.' 8 # _cell.entry_id 5CE7 _cell.length_a 51.310 _cell.length_b 51.310 _cell.length_c 119.050 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CE7 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CTD kinase subunit gamma' 15985.353 1 ? ? ? ? 2 non-polymer syn '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 238.305 2 ? ? ? ? 3 water nat water 18.015 67 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CTDK-I gamma subunit,CTD kinase subunit 3' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)DPFEGR(MSE)TFLQLLGKLNASQFSQIKPAQFAIKHLDLEEDLYSCIWEELESGSFNTRVNI(MSE)YFVDTLC E(MSE)CLKNGLTGGYLN(MSE)ISRDICKLVQNVAPIGAAGAANAPEVRKVLQSLHEKKVIDDNQYKDA(MSE)ATVEA HEQA ; _entity_poly.pdbx_seq_one_letter_code_can ;MDPFEGRMTFLQLLGKLNASQFSQIKPAQFAIKHLDLEEDLYSCIWEELESGSFNTRVNIMYFVDTLCEMCLKNGLTGGY LNMISRDICKLVQNVAPIGAAGAANAPEVRKVLQSLHEKKVIDDNQYKDAMATVEAHEQA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ASP n 1 3 PRO n 1 4 PHE n 1 5 GLU n 1 6 GLY n 1 7 ARG n 1 8 MSE n 1 9 THR n 1 10 PHE n 1 11 LEU n 1 12 GLN n 1 13 LEU n 1 14 LEU n 1 15 GLY n 1 16 LYS n 1 17 LEU n 1 18 ASN n 1 19 ALA n 1 20 SER n 1 21 GLN n 1 22 PHE n 1 23 SER n 1 24 GLN n 1 25 ILE n 1 26 LYS n 1 27 PRO n 1 28 ALA n 1 29 GLN n 1 30 PHE n 1 31 ALA n 1 32 ILE n 1 33 LYS n 1 34 HIS n 1 35 LEU n 1 36 ASP n 1 37 LEU n 1 38 GLU n 1 39 GLU n 1 40 ASP n 1 41 LEU n 1 42 TYR n 1 43 SER n 1 44 CYS n 1 45 ILE n 1 46 TRP n 1 47 GLU n 1 48 GLU n 1 49 LEU n 1 50 GLU n 1 51 SER n 1 52 GLY n 1 53 SER n 1 54 PHE n 1 55 ASN n 1 56 THR n 1 57 ARG n 1 58 VAL n 1 59 ASN n 1 60 ILE n 1 61 MSE n 1 62 TYR n 1 63 PHE n 1 64 VAL n 1 65 ASP n 1 66 THR n 1 67 LEU n 1 68 CYS n 1 69 GLU n 1 70 MSE n 1 71 CYS n 1 72 LEU n 1 73 LYS n 1 74 ASN n 1 75 GLY n 1 76 LEU n 1 77 THR n 1 78 GLY n 1 79 GLY n 1 80 TYR n 1 81 LEU n 1 82 ASN n 1 83 MSE n 1 84 ILE n 1 85 SER n 1 86 ARG n 1 87 ASP n 1 88 ILE n 1 89 CYS n 1 90 LYS n 1 91 LEU n 1 92 VAL n 1 93 GLN n 1 94 ASN n 1 95 VAL n 1 96 ALA n 1 97 PRO n 1 98 ILE n 1 99 GLY n 1 100 ALA n 1 101 ALA n 1 102 GLY n 1 103 ALA n 1 104 ALA n 1 105 ASN n 1 106 ALA n 1 107 PRO n 1 108 GLU n 1 109 VAL n 1 110 ARG n 1 111 LYS n 1 112 VAL n 1 113 LEU n 1 114 GLN n 1 115 SER n 1 116 LEU n 1 117 HIS n 1 118 GLU n 1 119 LYS n 1 120 LYS n 1 121 VAL n 1 122 ILE n 1 123 ASP n 1 124 ASP n 1 125 ASN n 1 126 GLN n 1 127 TYR n 1 128 LYS n 1 129 ASP n 1 130 ALA n 1 131 MSE n 1 132 ALA n 1 133 THR n 1 134 VAL n 1 135 GLU n 1 136 ALA n 1 137 HIS n 1 138 GLU n 1 139 GLN n 1 140 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 140 _entity_src_gen.gene_src_common_name 'Fission yeast' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ctk3, SPCC4B3.08' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Schizosaccharomyces pombe' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4896 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CTK3_SCHPO _struct_ref.pdbx_db_accession Q9USJ8 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDPFEGRMTFLQLLGKLNASQFSQIKPAQFAIKHLDLEEDLYSCIWEELESGSFNTRVNIMYFVDTLCEMCLKNGLTGGY LNMISRDICKLVQNVAPIGAAGAANAPEVRKVLQSLHEKKVIDDNQYKDAMATVEAHEQA ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5CE7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 140 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9USJ8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 140 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 140 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EPE non-polymer . '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' HEPES 'C8 H18 N2 O4 S' 238.305 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5CE7 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG 6000, citric acid, lithium chloride' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2011-06-29 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97964 1.0 2 0.98012 1.0 3 0.97197 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list '0.97964, 0.98012 ,0.97197' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5CE7 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 47.1200 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 20524 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.000 _reflns.percent_possible_obs 100.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs 0.082 _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.7 _reflns.pdbx_Rmerge_I_obs 0.077 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.890 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.991 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.083 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 157934 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.000 2.050 ? 4.930 ? 12233 1557 ? 1556 99.900 ? ? 0.328 ? 0.456 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.488 ? 0 1 1 ? ? 2.050 2.110 ? 5.890 ? 11238 1433 ? 1433 100.000 ? ? 0.276 ? 0.377 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.403 ? 0 2 1 ? ? 2.110 2.170 ? 6.610 ? 11177 1450 ? 1449 99.900 ? ? 0.247 ? 0.334 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.358 ? 0 3 1 ? ? 2.170 2.240 ? 7.700 ? 10459 1417 ? 1417 100.000 ? ? 0.212 ? 0.274 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.295 ? 0 4 1 ? ? 2.240 2.310 ? 9.230 ? 9949 1326 ? 1325 99.900 ? ? 0.158 ? 0.230 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.247 ? 0 5 1 ? ? 2.310 2.390 ? 11.650 ? 10440 1312 ? 1312 100.000 ? ? 0.124 ? 0.186 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.199 ? 0 6 1 ? ? 2.390 2.480 ? 12.230 ? 10067 1269 ? 1269 100.000 ? ? 0.117 ? 0.169 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.181 ? 0 7 1 ? ? 2.480 2.580 ? 14.790 ? 9666 1248 ? 1248 100.000 ? ? 0.089 ? 0.136 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.146 ? 0 8 1 ? ? 2.580 2.700 ? 16.630 ? 8618 1155 ? 1155 100.000 ? ? 0.080 ? 0.114 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.123 ? 0 9 1 ? ? 2.700 2.830 ? 18.170 ? 8182 1102 ? 1101 99.900 ? ? 0.071 ? 0.105 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.113 ? 0 10 1 ? ? 2.830 2.980 ? 22.940 ? 8420 1052 ? 1052 100.000 ? ? 0.053 ? 0.081 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.087 ? 0 11 1 ? ? 2.980 3.160 ? 25.990 ? 8052 1014 ? 1014 100.000 ? ? 0.046 ? 0.071 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.076 ? 0 12 1 ? ? 3.160 3.380 ? 32.010 ? 7328 944 ? 944 100.000 ? ? 0.036 ? 0.054 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.057 ? 0 13 1 ? ? 3.380 3.650 ? 38.270 ? 6347 874 ? 874 100.000 ? ? 0.027 ? 0.041 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.044 ? 0 14 1 ? ? 3.650 4.000 ? 48.310 ? 6302 804 ? 804 100.000 ? ? 0.020 ? 0.034 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.037 ? 0 15 1 ? ? 4.000 4.470 ? 54.160 ? 5737 737 ? 737 100.000 ? ? 0.016 ? 0.028 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.030 ? 0 16 1 ? ? 4.470 5.160 ? 52.260 ? 4739 651 ? 651 100.000 ? ? 0.016 ? 0.030 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.032 ? 0 17 1 ? ? 5.160 6.330 ? 48.770 ? 4000 528 ? 528 100.000 ? ? 0.020 ? 0.033 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.036 ? 0 18 1 ? ? 6.330 8.950 ? 52.820 ? 3245 422 ? 422 100.000 ? ? 0.017 ? 0.027 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.029 ? 0 19 1 ? ? 8.950 ? ? 70.430 ? 1735 233 ? 233 100.000 ? ? 0.011 ? 0.022 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.023 ? 0 20 1 ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5CE7 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 20524 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.58 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 47.120 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs 99.99 _refine.ls_R_factor_obs 0.1917 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1894 _refine.ls_R_factor_R_free 0.2410 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.79 _refine.ls_number_reflns_R_free 983 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.17 _refine.pdbx_overall_phase_error 20.39 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1097 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 1194 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 47.120 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 1145 'X-RAY DIFFRACTION' ? f_angle_d 1.047 ? ? 1544 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 17.952 ? ? 439 'X-RAY DIFFRACTION' ? f_chiral_restr 0.072 ? ? 168 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 197 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.0002 2.1056 2757 0.1916 100.00 0.2627 . . 154 . . . . 'X-RAY DIFFRACTION' . 2.1056 2.2376 2842 0.1851 100.00 0.2489 . . 130 . . . . 'X-RAY DIFFRACTION' . 2.2376 2.4103 2754 0.1737 100.00 0.2405 . . 145 . . . . 'X-RAY DIFFRACTION' . 2.4103 2.6528 2777 0.1712 100.00 0.2102 . . 164 . . . . 'X-RAY DIFFRACTION' . 2.6528 3.0367 2812 0.1774 100.00 0.2438 . . 140 . . . . 'X-RAY DIFFRACTION' . 3.0367 3.8256 2790 0.2012 100.00 0.2642 . . 129 . . . . 'X-RAY DIFFRACTION' . 3.8256 47.1329 2809 0.2001 100.00 0.2286 . . 121 . . . . # _struct.entry_id 5CE7 _struct.title 'Structure of a non-canonical CID of Ctk3' _struct.pdbx_descriptor 'CTD kinase subunit gamma' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5CE7 _struct_keywords.text 'Lsg1, CTD kinase subunit gamma, right-handed superhelix, transcription' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 2 ? GLY A 15 ? ASP A 2 GLY A 15 1 ? 14 HELX_P HELX_P2 AA2 SER A 20 ? SER A 23 ? SER A 20 SER A 23 5 ? 4 HELX_P HELX_P3 AA3 GLN A 24 ? HIS A 34 ? GLN A 24 HIS A 34 1 ? 11 HELX_P HELX_P4 AA4 LEU A 37 ? GLY A 52 ? LEU A 37 GLY A 52 1 ? 16 HELX_P HELX_P5 AA5 SER A 53 ? ASN A 74 ? SER A 53 ASN A 74 1 ? 22 HELX_P HELX_P6 AA6 GLY A 79 ? ASP A 87 ? GLY A 79 ASP A 87 1 ? 9 HELX_P HELX_P7 AA7 ASP A 87 ? ALA A 96 ? ASP A 87 ALA A 96 1 ? 10 HELX_P HELX_P8 AA8 GLY A 99 ? LYS A 119 ? GLY A 99 LYS A 119 1 ? 21 HELX_P HELX_P9 AA9 ASP A 123 ? ALA A 140 ? ASP A 123 ALA A 140 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A MSE 1 C ? ? ? 1_555 A ASP 2 N ? ? A MSE 1 A ASP 2 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale both ? A ARG 7 C ? ? ? 1_555 A MSE 8 N ? ? A ARG 7 A MSE 8 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale both ? A MSE 8 C ? ? ? 1_555 A THR 9 N ? ? A MSE 8 A THR 9 1_555 ? ? ? ? ? ? ? 1.325 ? covale4 covale both ? A ILE 60 C ? ? ? 1_555 A MSE 61 N ? ? A ILE 60 A MSE 61 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale both ? A MSE 61 C ? ? ? 1_555 A TYR 62 N ? ? A MSE 61 A TYR 62 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale both ? A GLU 69 C ? ? ? 1_555 A MSE 70 N ? ? A GLU 69 A MSE 70 1_555 ? ? ? ? ? ? ? 1.322 ? covale7 covale both ? A MSE 70 C ? ? ? 1_555 A CYS 71 N ? ? A MSE 70 A CYS 71 1_555 ? ? ? ? ? ? ? 1.329 ? covale8 covale both ? A ASN 82 C ? ? ? 1_555 A MSE 83 N ? ? A ASN 82 A MSE 83 1_555 ? ? ? ? ? ? ? 1.329 ? covale9 covale both ? A MSE 83 C ? ? ? 1_555 A ILE 84 N ? ? A MSE 83 A ILE 84 1_555 ? ? ? ? ? ? ? 1.322 ? covale10 covale both ? A ALA 130 C ? ? ? 1_555 A MSE 131 N ? ? A ALA 130 A MSE 131 1_555 ? ? ? ? ? ? ? 1.328 ? covale11 covale both ? A MSE 131 C ? ? ? 1_555 A ALA 132 N ? ? A MSE 131 A ALA 132 1_555 ? ? ? ? ? ? ? 1.332 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EPE 201 ? 5 'binding site for residue EPE A 201' AC2 Software A EPE 202 ? 9 'binding site for residue EPE A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLN A 12 ? GLN A 12 . ? 1_555 ? 2 AC1 5 LYS A 16 ? LYS A 16 . ? 1_555 ? 3 AC1 5 LEU A 35 ? LEU A 35 . ? 5_655 ? 4 AC1 5 ASP A 36 ? ASP A 36 . ? 5_655 ? 5 AC1 5 GLU A 38 ? GLU A 38 . ? 5_655 ? 6 AC2 9 ALA A 19 ? ALA A 19 . ? 1_555 ? 7 AC2 9 GLN A 21 ? GLN A 21 . ? 1_555 ? 8 AC2 9 GLU A 39 ? GLU A 39 . ? 4_565 ? 9 AC2 9 SER A 43 ? SER A 43 . ? 4_565 ? 10 AC2 9 TYR A 62 ? TYR A 62 . ? 1_555 ? 11 AC2 9 PRO A 107 ? PRO A 107 . ? 1_555 ? 12 AC2 9 GLU A 108 ? GLU A 108 . ? 1_555 ? 13 AC2 9 LYS A 111 ? LYS A 111 . ? 1_555 ? 14 AC2 9 HOH D . ? HOH A 344 . ? 4_565 ? # _atom_sites.entry_id 5CE7 _atom_sites.fract_transf_matrix[1][1] 0.019489 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019489 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008400 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 MSE 8 8 8 MSE MSE A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 HIS 34 34 34 HIS HIS A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 CYS 44 44 44 CYS CYS A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 TRP 46 46 46 TRP TRP A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 MSE 61 61 61 MSE MSE A . n A 1 62 TYR 62 62 62 TYR TYR A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 CYS 68 68 68 CYS CYS A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 MSE 70 70 70 MSE MSE A . n A 1 71 CYS 71 71 71 CYS CYS A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 MSE 83 83 83 MSE MSE A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 CYS 89 89 89 CYS CYS A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 GLN 93 93 93 GLN GLN A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 PRO 97 97 97 PRO PRO A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 ASN 105 105 105 ASN ASN A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 GLN 114 114 114 GLN GLN A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 HIS 117 117 117 HIS HIS A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 LYS 120 120 120 LYS LYS A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 ILE 122 122 122 ILE ILE A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 ASN 125 125 125 ASN ASN A . n A 1 126 GLN 126 126 126 GLN GLN A . n A 1 127 TYR 127 127 127 TYR TYR A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 MSE 131 131 131 MSE MSE A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 THR 133 133 133 THR THR A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 HIS 137 137 137 HIS HIS A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 GLN 139 139 139 GLN GLN A . n A 1 140 ALA 140 140 140 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE 1 201 1 EPE EPE A . C 2 EPE 1 202 1 EPE EPE A . D 3 HOH 1 301 35 HOH HOH A . D 3 HOH 2 302 63 HOH HOH A . D 3 HOH 3 303 26 HOH HOH A . D 3 HOH 4 304 52 HOH HOH A . D 3 HOH 5 305 41 HOH HOH A . D 3 HOH 6 306 12 HOH HOH A . D 3 HOH 7 307 11 HOH HOH A . D 3 HOH 8 308 10 HOH HOH A . D 3 HOH 9 309 67 HOH HOH A . D 3 HOH 10 310 21 HOH HOH A . D 3 HOH 11 311 42 HOH HOH A . D 3 HOH 12 312 49 HOH HOH A . D 3 HOH 13 313 43 HOH HOH A . D 3 HOH 14 314 62 HOH HOH A . D 3 HOH 15 315 17 HOH HOH A . D 3 HOH 16 316 29 HOH HOH A . D 3 HOH 17 317 36 HOH HOH A . D 3 HOH 18 318 14 HOH HOH A . D 3 HOH 19 319 39 HOH HOH A . D 3 HOH 20 320 1 HOH HOH A . D 3 HOH 21 321 30 HOH HOH A . D 3 HOH 22 322 37 HOH HOH A . D 3 HOH 23 323 25 HOH HOH A . D 3 HOH 24 324 54 HOH HOH A . D 3 HOH 25 325 2 HOH HOH A . D 3 HOH 26 326 15 HOH HOH A . D 3 HOH 27 327 31 HOH HOH A . D 3 HOH 28 328 33 HOH HOH A . D 3 HOH 29 329 50 HOH HOH A . D 3 HOH 30 330 24 HOH HOH A . D 3 HOH 31 331 28 HOH HOH A . D 3 HOH 32 332 7 HOH HOH A . D 3 HOH 33 333 58 HOH HOH A . D 3 HOH 34 334 66 HOH HOH A . D 3 HOH 35 335 13 HOH HOH A . D 3 HOH 36 336 4 HOH HOH A . D 3 HOH 37 337 57 HOH HOH A . D 3 HOH 38 338 56 HOH HOH A . D 3 HOH 39 339 44 HOH HOH A . D 3 HOH 40 340 46 HOH HOH A . D 3 HOH 41 341 20 HOH HOH A . D 3 HOH 42 342 16 HOH HOH A . D 3 HOH 43 343 53 HOH HOH A . D 3 HOH 44 344 47 HOH HOH A . D 3 HOH 45 345 32 HOH HOH A . D 3 HOH 46 346 3 HOH HOH A . D 3 HOH 47 347 9 HOH HOH A . D 3 HOH 48 348 38 HOH HOH A . D 3 HOH 49 349 8 HOH HOH A . D 3 HOH 50 350 65 HOH HOH A . D 3 HOH 51 351 45 HOH HOH A . D 3 HOH 52 352 19 HOH HOH A . D 3 HOH 53 353 6 HOH HOH A . D 3 HOH 54 354 18 HOH HOH A . D 3 HOH 55 355 5 HOH HOH A . D 3 HOH 56 356 64 HOH HOH A . D 3 HOH 57 357 55 HOH HOH A . D 3 HOH 58 358 51 HOH HOH A . D 3 HOH 59 359 34 HOH HOH A . D 3 HOH 60 360 60 HOH HOH A . D 3 HOH 61 361 59 HOH HOH A . D 3 HOH 62 362 22 HOH HOH A . D 3 HOH 63 363 40 HOH HOH A . D 3 HOH 64 364 23 HOH HOH A . D 3 HOH 65 365 48 HOH HOH A . D 3 HOH 66 366 27 HOH HOH A . D 3 HOH 67 367 61 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 1 ? MET 'modified residue' 2 A MSE 8 A MSE 8 ? MET 'modified residue' 3 A MSE 61 A MSE 61 ? MET 'modified residue' 4 A MSE 70 A MSE 70 ? MET 'modified residue' 5 A MSE 83 A MSE 83 ? MET 'modified residue' 6 A MSE 131 A MSE 131 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 650 ? 1 MORE 9 ? 1 'SSA (A^2)' 7240 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-08-05 2 'Structure model' 1 1 2015-08-19 3 'Structure model' 1 2 2015-09-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.000 _diffrn_reflns.pdbx_d_res_low ? _diffrn_reflns.pdbx_number_obs 20524 _diffrn_reflns.pdbx_Rmerge_I_obs 0.077 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 0.99 _diffrn_reflns.pdbx_redundancy ? _diffrn_reflns.pdbx_rejects ? _diffrn_reflns.pdbx_percent_possible_obs 100.00 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.number 157934 _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 8.95 47.120 233 ? 0.022 ? ? ? ? 1 6.33 8.95 422 ? 0.027 ? ? ? ? 1 5.16 6.33 528 ? 0.033 ? ? ? ? 1 4.47 5.16 651 ? 0.030 ? ? ? ? 1 4.00 4.47 737 ? 0.028 ? ? ? ? 1 3.65 4.00 804 ? 0.034 ? ? ? ? 1 3.38 3.65 874 ? 0.041 ? ? ? ? 1 3.16 3.38 944 ? 0.054 ? ? ? ? 1 2.98 3.16 1014 ? 0.071 ? ? ? ? 1 2.83 2.98 1052 ? 0.081 ? ? ? ? 1 2.70 2.83 1101 ? 0.105 ? ? ? ? 1 2.58 2.70 1155 ? 0.114 ? ? ? ? 1 2.48 2.58 1248 ? 0.136 ? ? ? ? 1 2.39 2.48 1269 ? 0.169 ? ? ? ? 1 2.31 2.39 1312 ? 0.186 ? ? ? ? 1 2.24 2.31 1325 ? 0.230 ? ? ? ? 1 2.17 2.24 1417 ? 0.274 ? ? ? ? 1 2.11 2.17 1449 ? 0.334 ? ? ? ? 1 2.05 2.11 1433 ? 0.377 ? ? ? ? 1 2.00 2.05 1556 ? 0.456 ? ? ? ? # _pdbx_phasing_dm.entry_id 5CE7 _pdbx_phasing_dm.fom_acentric 0.730 _pdbx_phasing_dm.fom_centric 0.720 _pdbx_phasing_dm.fom 0.730 _pdbx_phasing_dm.reflns_acentric 4453 _pdbx_phasing_dm.reflns_centric 1410 _pdbx_phasing_dm.reflns 5863 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 7.100 47.120 ? ? 0.950 0.870 0.900 119 160 279 4.500 7.100 ? ? 0.900 0.850 0.880 533 266 799 3.600 4.500 ? ? 0.890 0.810 0.870 725 251 976 3.100 3.600 ? ? 0.820 0.760 0.800 780 215 995 2.700 3.100 ? ? 0.650 0.580 0.640 1407 332 1739 2.500 2.700 ? ? 0.520 0.470 0.510 889 186 1075 # _phasing.method MAD # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? SOLVE ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NZ A LYS 26 ? ? O A HOH 301 ? ? 2.07 2 1 O A HOH 366 ? ? O A HOH 367 ? ? 2.11 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 365 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 366 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_565 _pdbx_validate_symm_contact.dist 2.08 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' EPE 3 water HOH #