HEADER OXIDOREDUCTASE 06-JUL-15 5CEE TITLE MALIC ENZYME FROM CANDIDATUS PHYTOPLASMA AYWB IN COMPLEX WITH NAD AND TITLE 2 MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT MALIC ENZYME; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.38; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASTER YELLOWS WITCHES'-BROOM PHYTOPLASMA SOURCE 3 (STRAIN AYWB); SOURCE 4 ORGANISM_TAXID: 322098; SOURCE 5 STRAIN: AYWB; SOURCE 6 GENE: SFCA, AYWB_051; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PHYTOPLASM MALIC ENZYME, MALATE METABOLISM, PLANT PATHOGEN, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.E.ALVAREZ,F.TRAJTENBERG,N.LARRIEUX,M.SAIGO,M.A.MUSSI,C.S.ANDREO, AUTHOR 2 M.F.DRINCOVICH,A.BUSCHIAZZO REVDAT 5 27-SEP-23 5CEE 1 REMARK REVDAT 4 25-DEC-19 5CEE 1 JRNL REVDAT 3 27-NOV-19 5CEE 1 REMARK REVDAT 2 18-APR-18 5CEE 1 JRNL REMARK REVDAT 1 05-OCT-16 5CEE 0 JRNL AUTH C.E.ALVAREZ,F.TRAJTENBERG,N.LARRIEUX,M.SAIGO,A.GOLIC, JRNL AUTH 2 C.S.ANDREO,S.A.HOGENHOUT,M.A.MUSSI,M.F.DRINCOVICH, JRNL AUTH 3 A.BUSCHIAZZO JRNL TITL THE CRYSTAL STRUCTURE OF THE MALIC ENZYME FROM CANDIDATUS JRNL TITL 2 PHYTOPLASMA REVEALS THE MINIMAL STRUCTURAL DETERMINANTS FOR JRNL TITL 3 A MALIC ENZYME. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 74 332 2018 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 29652260 JRNL DOI 10.1107/S2059798318002759 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 14357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.3344 - 6.4789 0.89 1297 156 0.1277 0.1619 REMARK 3 2 6.4789 - 5.1750 0.92 1334 122 0.1421 0.1696 REMARK 3 3 5.1750 - 4.5304 0.93 1352 106 0.1204 0.1453 REMARK 3 4 4.5304 - 4.1206 0.89 1276 153 0.1288 0.1489 REMARK 3 5 4.1206 - 3.8277 0.89 1309 157 0.1306 0.1629 REMARK 3 6 3.8277 - 3.6035 0.91 1313 133 0.1354 0.1877 REMARK 3 7 3.6035 - 3.4241 0.90 1275 145 0.1341 0.1807 REMARK 3 8 3.4241 - 3.2758 0.90 1306 141 0.1386 0.1904 REMARK 3 9 3.2758 - 3.1503 0.89 1321 156 0.1500 0.2518 REMARK 3 10 3.1503 - 3.0420 0.90 1253 140 0.1482 0.2203 REMARK 3 11 3.0420 - 2.9472 0.91 1359 141 0.1629 0.1973 REMARK 3 12 2.9472 - 2.8632 0.90 1288 139 0.1682 0.2118 REMARK 3 13 2.8632 - 2.7881 0.91 1318 130 0.1773 0.2319 REMARK 3 14 2.7881 - 2.7202 0.88 1284 146 0.1885 0.2461 REMARK 3 15 2.7202 - 2.6586 0.86 1223 135 0.2215 0.2729 REMARK 3 16 2.6586 - 2.6021 0.85 1240 131 0.2444 0.2846 REMARK 3 17 2.6021 - 2.5502 0.81 1156 131 0.2734 0.3674 REMARK 3 18 2.5502 - 2.5022 0.76 1114 148 0.3016 0.3894 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2964 REMARK 3 ANGLE : 1.151 4010 REMARK 3 CHIRALITY : 0.043 494 REMARK 3 PLANARITY : 0.005 504 REMARK 3 DIHEDRAL : 17.941 1112 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CEE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000208125. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MULTILAYER MIRRORS (VARIMAX-HF) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14448 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.498 REMARK 200 RESOLUTION RANGE LOW (A) : 29.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.70100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2DVM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2; 0.1 M TRIS PH 8.5; 30% REMARK 280 PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.02267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 194.04533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 194.04533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 97.02267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -97.02267 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 511 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 VAL A -8 REMARK 465 PRO A -7 REMARK 465 ARG A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 LYS A 390 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 3 CG1 CG2 CD1 REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 GLN A 27 CG CD OE1 NE2 REMARK 470 GLU A 353 CG CD OE1 OE2 REMARK 470 ASP A 355 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 133 O HOH A 501 1.83 REMARK 500 O ASN A 316 O HOH A 502 2.16 REMARK 500 OE2 GLU A 337 NZ LYS A 340 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 311 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 28 -152.42 -119.80 REMARK 500 ASP A 30 -72.13 -55.20 REMARK 500 TYR A 36 -145.46 -137.73 REMARK 500 ASN A 69 -38.59 -131.27 REMARK 500 LEU A 74 -121.95 46.85 REMARK 500 ASP A 109 73.51 -101.77 REMARK 500 ALA A 192 37.64 -94.42 REMARK 500 LYS A 216 6.34 -65.88 REMARK 500 ASN A 226 82.18 67.24 REMARK 500 SER A 261 -67.64 -146.50 REMARK 500 CYS A 317 3.25 -68.86 REMARK 500 GLU A 353 -17.99 90.28 REMARK 500 ASN A 360 60.16 -157.07 REMARK 500 ASN A 367 112.86 -37.27 REMARK 500 VAL A 387 57.48 -58.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 133 OE2 REMARK 620 2 ASP A 134 OD1 120.7 REMARK 620 3 ASP A 159 OD1 95.1 110.4 REMARK 620 4 ASP A 159 OD2 69.9 86.9 49.9 REMARK 620 5 HOH A 501 O 52.3 162.4 87.0 103.2 REMARK 620 6 HOH A 503 O 138.9 100.3 65.2 112.3 89.3 REMARK 620 7 HOH A 507 O 106.5 87.5 139.7 170.4 80.4 76.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 DBREF 5CEE A 1 390 UNP Q2NK75 Q2NK75_AYWBP 1 390 SEQADV 5CEE MET A -22 UNP Q2NK75 INITIATING METHIONINE SEQADV 5CEE GLY A -21 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE SER A -20 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE SER A -19 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE HIS A -18 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE HIS A -17 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE HIS A -16 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE HIS A -15 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE HIS A -14 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE HIS A -13 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE SER A -12 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE SER A -11 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE GLY A -10 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE LEU A -9 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE VAL A -8 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE PRO A -7 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE ARG A -6 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE GLY A -5 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE SER A -4 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE HIS A -3 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE MET A -2 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE ALA A -1 UNP Q2NK75 EXPRESSION TAG SEQADV 5CEE SER A 0 UNP Q2NK75 EXPRESSION TAG SEQRES 1 A 413 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 413 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET ASN ILE SEQRES 3 A 413 LYS GLU LYS ALA LEU GLU MET HIS GLU LYS ASN LYS GLY SEQRES 4 A 413 LYS VAL GLY VAL VAL SER LYS VAL LYS VAL GLN ASN LEU SEQRES 5 A 413 ASP ASP LEU SER LEU VAL TYR THR PRO GLY VAL ALA GLU SEQRES 6 A 413 PRO CYS LEU LYS ILE LYS GLU ASN PRO SER ASP VAL TYR SEQRES 7 A 413 ARG TYR THR MET LYS GLY ASN MET VAL GLY VAL ILE THR SEQRES 8 A 413 ASN GLY THR ALA VAL LEU GLY LEU GLY ASN ILE GLY PRO SEQRES 9 A 413 LYS ALA SER LEU PRO VAL MET GLU GLY LYS ALA ILE LEU SEQRES 10 A 413 PHE LYS GLU LEU ALA GLY ILE ASP SER PHE PRO ILE CYS SEQRES 11 A 413 ILE ASP SER THR ASP SER GLN GLU ILE VAL ASN ILE VAL SEQRES 12 A 413 SER LYS ILE SER THR VAL PHE GLY ALA ILE ASN LEU GLU SEQRES 13 A 413 ASP ILE LYS SER PRO GLN CYS ILE GLU ILE GLU ASP ALA SEQRES 14 A 413 LEU LYS ALA LYS LEU ASP ILE PRO VAL PHE HIS ASP ASP SEQRES 15 A 413 GLN HIS GLY THR ALA ILE VAL VAL ALA ALA GLY ILE LEU SEQRES 16 A 413 ASN ALA LEU LYS VAL VAL LYS LYS SER ILE GLU ASP VAL SEQRES 17 A 413 GLN VAL VAL ILE ASN GLY ALA GLY SER ALA GLY MET ALA SEQRES 18 A 413 ILE ALA LYS MET LEU LEU LEU LEU LYS VAL ASN ASN VAL SEQRES 19 A 413 VAL LEU VAL ASP LYS THR GLY THR LEU TYR LYS GLY VAL SEQRES 20 A 413 ALA ASN LEU ASN GLU PRO GLN LYS LYS LEU VAL GLU VAL SEQRES 21 A 413 THR ASN LYS TYR GLN GLU LYS GLY THR LEU LYS GLU VAL SEQRES 22 A 413 LEU LYS GLY LYS ASP ILE PHE ILE GLY VAL SER ALA PRO SEQRES 23 A 413 GLY ILE VAL THR ALA GLU MET VAL ALA THR MET ALA LYS SEQRES 24 A 413 ASP ALA ILE VAL PHE ALA LEU ALA ASN PRO VAL PRO GLU SEQRES 25 A 413 ILE MET PRO ASP GLU ALA LYS LYS GLY GLY ALA ARG ILE SEQRES 26 A 413 VAL ALA THR GLY ARG SER ASP PHE PRO ASN GLN VAL ASN SEQRES 27 A 413 ASN CYS LEU ALA PHE PRO GLY VAL PHE ARG GLY THR LEU SEQRES 28 A 413 ASP ALA LYS ALA THR GLN ILE THR GLU GLU MET LYS LYS SEQRES 29 A 413 ALA ALA THR TYR ALA LEU LYS ASN ILE ILE LYS GLU GLN SEQRES 30 A 413 ASP LEU ASN GLU ASN ASN ILE LEU PRO THR SER PHE ASN SEQRES 31 A 413 LYS GLU VAL VAL LYS GLN ILE ALA LEU ALA VAL CYS LYS SEQRES 32 A 413 VAL ALA LYS GLU THR GLY VAL VAL ARG LYS HET NAD A 401 44 HET MG A 402 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM MG MAGNESIUM ION FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 MG MG 2+ FORMUL 4 HOH *13(H2 O) HELIX 1 AA1 ILE A 3 LYS A 15 1 13 HELIX 2 AA2 ASP A 31 TYR A 36 1 6 HELIX 3 AA3 VAL A 40 ASN A 50 1 11 HELIX 4 AA4 ASP A 53 THR A 58 1 6 HELIX 5 AA5 MET A 59 GLY A 61 5 3 HELIX 6 AA6 ILE A 79 GLY A 100 1 22 HELIX 7 AA7 ASP A 112 ILE A 123 1 12 HELIX 8 AA8 SER A 124 PHE A 127 5 4 HELIX 9 AA9 PRO A 138 LEU A 151 1 14 HELIX 10 AB1 ASP A 158 VAL A 178 1 21 HELIX 11 AB2 GLY A 193 LEU A 205 1 13 HELIX 12 AB3 ASN A 228 THR A 238 1 11 HELIX 13 AB4 THR A 246 LYS A 252 1 7 HELIX 14 AB5 THR A 267 MET A 274 1 8 HELIX 15 AB6 MET A 291 GLY A 299 1 9 HELIX 16 AB7 ASN A 315 LEU A 318 5 4 HELIX 17 AB8 ALA A 319 ALA A 330 1 12 HELIX 18 AB9 THR A 336 ASN A 349 1 14 HELIX 19 AC1 LYS A 368 GLY A 386 1 19 SHEET 1 AA1 4 ASP A 102 CYS A 107 0 SHEET 2 AA1 4 MET A 63 THR A 68 1 N VAL A 66 O ILE A 106 SHEET 3 AA1 4 ALA A 129 GLU A 133 1 O ASN A 131 N GLY A 65 SHEET 4 AA1 4 VAL A 155 HIS A 157 1 O PHE A 156 N LEU A 132 SHEET 1 AA2 6 GLY A 218 THR A 219 0 SHEET 2 AA2 6 ASN A 210 ASP A 215 -1 N ASP A 215 O GLY A 218 SHEET 3 AA2 6 GLN A 186 ASN A 190 1 N ILE A 189 O VAL A 212 SHEET 4 AA2 6 ILE A 256 GLY A 259 1 O ILE A 258 N VAL A 188 SHEET 5 AA2 6 ALA A 278 ALA A 282 1 O PHE A 281 N GLY A 259 SHEET 6 AA2 6 ALA A 300 THR A 305 1 O ILE A 302 N VAL A 280 LINK OE2 GLU A 133 MG MG A 402 1555 1555 2.08 LINK OD1 ASP A 134 MG MG A 402 1555 1555 1.93 LINK OD1 ASP A 159 MG MG A 402 1555 1555 2.22 LINK OD2 ASP A 159 MG MG A 402 1555 1555 2.79 LINK MG MG A 402 O HOH A 501 1555 1555 2.06 LINK MG MG A 402 O HOH A 503 1555 1555 2.12 LINK MG MG A 402 O HOH A 507 1555 1555 2.04 CISPEP 1 THR A 37 PRO A 38 0 6.01 CISPEP 2 SER A 137 PRO A 138 0 2.29 CISPEP 3 ASN A 285 PRO A 286 0 0.44 SITE 1 AC1 19 THR A 163 ASN A 190 GLY A 191 GLY A 193 SITE 2 AC1 19 SER A 194 ALA A 195 ASP A 215 LYS A 216 SITE 3 AC1 19 VAL A 260 SER A 261 ALA A 262 ILE A 265 SITE 4 AC1 19 LEU A 283 ALA A 284 ASN A 285 GLY A 306 SITE 5 AC1 19 VAL A 314 ASN A 316 HOH A 504 SITE 1 AC2 6 GLU A 133 ASP A 134 ASP A 159 HOH A 501 SITE 2 AC2 6 HOH A 503 HOH A 507 CRYST1 48.236 48.236 291.068 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020731 0.011969 0.000000 0.00000 SCALE2 0.000000 0.023939 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003436 0.00000