HEADER OXIDOREDUCTASE/INHIBITOR 06-JUL-15 5CEH TITLE STRUCTURE OF HISTONE LYSINE DEMETHYLASE KDM5A IN COMPLEX WITH TITLE 2 SELECTIVE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 5A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 12-797; COMPND 5 SYNONYM: HISTONE DEMETHYLASE JARID1A,JUMONJI/ARID DOMAIN-CONTAINING COMPND 6 PROTEIN 1A,RETINOBLASTOMA-BINDING PROTEIN 2,RBBP-2; COMPND 7 EC: 1.14.11.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: UNKNOWN PEPTIDE; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: A LARGE SECTION OF CHAIN A IS MISSING IN THE COMPND 14 COORDINATES AND CHAIN B IS PROBABLY A PART OF CHAIN A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KDM5A, JARID1A, RBBP2, RBP2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PACGP67; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: KDM5A, JARID1A, RBBP2, RBP2; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PACGP67 KEYWDS EPIGENETICS, DEMETHYLASE, HISTONE, KDM5A, KDM5, OXIDOREDUCTASE- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.KIEFER,M.VINOGRADOVA REVDAT 5 22-NOV-17 5CEH 1 REMARK REVDAT 4 20-JUL-16 5CEH 1 REMARK REVDAT 3 06-JUL-16 5CEH 1 JRNL REVDAT 2 08-JUN-16 5CEH 1 JRNL REVDAT 1 18-MAY-16 5CEH 0 JRNL AUTH M.VINOGRADOVA,V.S.GEHLING,A.GUSTAFSON,S.ARORA,C.A.TINDELL, JRNL AUTH 2 C.WILSON,K.E.WILLIAMSON,G.D.GULER,P.GANGURDE,W.MANIERI, JRNL AUTH 3 J.BUSBY,E.M.FLYNN,F.LAN,H.J.KIM,S.ODATE,A.G.COCHRAN,Y.LIU, JRNL AUTH 4 M.WONGCHENKO,Y.YANG,T.K.CHEUNG,T.M.MAILE,T.LAU,M.COSTA, JRNL AUTH 5 G.V.HEGDE,E.JACKSON,R.PITTI,D.ARNOTT,C.BAILEY,S.BELLON, JRNL AUTH 6 R.T.CUMMINGS,B.K.ALBRECHT,J.C.HARMANGE,J.R.KIEFER,P.TROJER, JRNL AUTH 7 M.CLASSON JRNL TITL AN INHIBITOR OF KDM5 DEMETHYLASES REDUCES SURVIVAL OF JRNL TITL 2 DRUG-TOLERANT CANCER CELLS. JRNL REF NAT.CHEM.BIOL. V. 12 531 2016 JRNL REFN ESSN 1552-4469 JRNL PMID 27214401 JRNL DOI 10.1038/NCHEMBIO.2085 REMARK 2 REMARK 2 RESOLUTION. 3.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 23004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8297 - 6.2688 0.97 2871 147 0.2089 0.2046 REMARK 3 2 6.2688 - 4.9788 0.98 2789 148 0.2156 0.2457 REMARK 3 3 4.9788 - 4.3503 0.98 2791 144 0.1747 0.1978 REMARK 3 4 4.3503 - 3.9529 0.99 2793 151 0.2028 0.2247 REMARK 3 5 3.9529 - 3.6698 0.99 2782 160 0.2411 0.2959 REMARK 3 6 3.6698 - 3.4536 0.99 2770 143 0.2678 0.2814 REMARK 3 7 3.4536 - 3.2807 0.97 2763 140 0.3062 0.3392 REMARK 3 8 3.2807 - 3.1380 0.82 2283 129 0.3620 0.4248 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 108.1 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4807 REMARK 3 ANGLE : 1.297 6535 REMARK 3 CHIRALITY : 0.064 702 REMARK 3 PLANARITY : 0.006 862 REMARK 3 DIHEDRAL : 16.151 1750 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 130.3740 382.3872 100.7256 REMARK 3 T TENSOR REMARK 3 T11: 0.5302 T22: 0.1316 REMARK 3 T33: 0.3676 T12: -0.1833 REMARK 3 T13: 0.2266 T23: 0.1771 REMARK 3 L TENSOR REMARK 3 L11: 0.5918 L22: 1.0180 REMARK 3 L33: 0.2835 L12: 0.5949 REMARK 3 L13: -0.1792 L23: 0.1396 REMARK 3 S TENSOR REMARK 3 S11: -0.0448 S12: 0.0530 S13: 0.2467 REMARK 3 S21: -0.0027 S22: -0.0877 S23: 0.2257 REMARK 3 S31: -0.2507 S32: 0.1006 S33: -0.9756 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 135.5568 352.7098 125.9706 REMARK 3 T TENSOR REMARK 3 T11: 0.3255 T22: 0.5674 REMARK 3 T33: 0.4680 T12: -0.0082 REMARK 3 T13: -0.1325 T23: -0.0500 REMARK 3 L TENSOR REMARK 3 L11: 1.9549 L22: 1.9388 REMARK 3 L33: 0.2413 L12: -1.6787 REMARK 3 L13: 0.3339 L23: -0.6733 REMARK 3 S TENSOR REMARK 3 S11: -0.0549 S12: -0.1280 S13: 0.4783 REMARK 3 S21: 0.3142 S22: 0.0086 S23: 0.1311 REMARK 3 S31: -0.2017 S32: 0.1972 S33: -0.0574 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 133.5431 354.5760 128.4140 REMARK 3 T TENSOR REMARK 3 T11: 0.1881 T22: 0.4247 REMARK 3 T33: 0.3408 T12: -0.1647 REMARK 3 T13: 0.0279 T23: -0.1962 REMARK 3 L TENSOR REMARK 3 L11: 2.0273 L22: 1.1812 REMARK 3 L33: 1.0324 L12: -0.9110 REMARK 3 L13: 0.8520 L23: -0.5109 REMARK 3 S TENSOR REMARK 3 S11: 0.2118 S12: -0.5031 S13: -0.3856 REMARK 3 S21: 0.1405 S22: 0.0956 S23: 0.3808 REMARK 3 S31: 0.0462 S32: 0.1846 S33: -0.0129 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 379 THROUGH 510 ) REMARK 3 ORIGIN FOR THE GROUP (A): 125.6824 372.4328 110.0238 REMARK 3 T TENSOR REMARK 3 T11: 0.2814 T22: 0.2408 REMARK 3 T33: 0.2579 T12: -0.0922 REMARK 3 T13: 0.0340 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.8532 L22: 2.0674 REMARK 3 L33: 1.6295 L12: 0.0361 REMARK 3 L13: -0.1088 L23: -0.2896 REMARK 3 S TENSOR REMARK 3 S11: 0.1521 S12: -0.3243 S13: -0.2694 REMARK 3 S21: 0.0320 S22: 0.0396 S23: 0.0890 REMARK 3 S31: -0.1059 S32: 0.1273 S33: -0.1480 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 511 THROUGH 565 ) REMARK 3 ORIGIN FOR THE GROUP (A): 144.5139 367.6251 111.7042 REMARK 3 T TENSOR REMARK 3 T11: 0.2694 T22: 0.3786 REMARK 3 T33: 0.4307 T12: -0.1491 REMARK 3 T13: 0.0782 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.8485 L22: 3.0117 REMARK 3 L33: 1.0818 L12: -0.9509 REMARK 3 L13: 0.5397 L23: -0.4495 REMARK 3 S TENSOR REMARK 3 S11: -0.1473 S12: -0.1101 S13: 0.2964 REMARK 3 S21: 0.2164 S22: 0.1166 S23: -0.8813 REMARK 3 S31: 0.1345 S32: 0.1839 S33: -0.0330 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 566 THROUGH 702 ) REMARK 3 ORIGIN FOR THE GROUP (A): 134.6366 352.9388 94.0530 REMARK 3 T TENSOR REMARK 3 T11: 0.4391 T22: 0.4114 REMARK 3 T33: 0.8024 T12: -0.0334 REMARK 3 T13: 0.0762 T23: -0.1085 REMARK 3 L TENSOR REMARK 3 L11: 2.2283 L22: 4.8307 REMARK 3 L33: 2.2427 L12: -0.1904 REMARK 3 L13: -0.0770 L23: 1.7649 REMARK 3 S TENSOR REMARK 3 S11: -0.0786 S12: 0.2115 S13: -1.0619 REMARK 3 S21: -0.2861 S22: 0.2056 S23: -0.4653 REMARK 3 S31: 0.5300 S32: 0.1131 S33: -0.1671 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 703 THROUGH 785 ) REMARK 3 ORIGIN FOR THE GROUP (A): 130.1758 359.5420 78.3673 REMARK 3 T TENSOR REMARK 3 T11: 1.4415 T22: 0.8567 REMARK 3 T33: 0.5474 T12: -0.2422 REMARK 3 T13: -0.2004 T23: -0.3852 REMARK 3 L TENSOR REMARK 3 L11: 0.7534 L22: 2.1719 REMARK 3 L33: 1.1083 L12: 0.9786 REMARK 3 L13: -0.4845 L23: -0.3286 REMARK 3 S TENSOR REMARK 3 S11: -0.3602 S12: 0.3053 S13: -0.3065 REMARK 3 S21: -0.8705 S22: 0.3501 S23: -0.4773 REMARK 3 S31: -0.0877 S32: -0.2545 S33: -0.1107 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CEH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211480. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23075 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.1 M HEPES, PH 7.3, 12% REMARK 280 GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.82067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.64133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.64133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.82067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER. A LARGE SECTION OF REMARK 300 CHAIN A IS MISSING IN THE COORDINATES AND CHAIN B IS PROBABLY A REMARK 300 PART OF CHAIN A REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NH2 ARG A 428 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 UNK A905 THROUGH UNK A914 IS A SEGEMENT FROM THE REGION A184 AND REMARK 400 A798 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 11 REMARK 465 PRO A 184 REMARK 465 ASN A 185 REMARK 465 LEU A 186 REMARK 465 ASP A 187 REMARK 465 LEU A 188 REMARK 465 LYS A 189 REMARK 465 GLU A 190 REMARK 465 LYS A 191 REMARK 465 VAL A 192 REMARK 465 GLU A 193 REMARK 465 PRO A 194 REMARK 465 GLU A 195 REMARK 465 VAL A 196 REMARK 465 LEU A 197 REMARK 465 SER A 198 REMARK 465 THR A 199 REMARK 465 ASP A 200 REMARK 465 THR A 201 REMARK 465 GLN A 202 REMARK 465 THR A 203 REMARK 465 SER A 204 REMARK 465 PRO A 205 REMARK 465 GLU A 206 REMARK 465 PRO A 207 REMARK 465 GLY A 208 REMARK 465 THR A 209 REMARK 465 ARG A 210 REMARK 465 MET A 211 REMARK 465 ASN A 212 REMARK 465 ILE A 213 REMARK 465 LEU A 214 REMARK 465 PRO A 215 REMARK 465 LYS A 216 REMARK 465 ARG A 217 REMARK 465 THR A 218 REMARK 465 ARG A 219 REMARK 465 ARG A 220 REMARK 465 VAL A 221 REMARK 465 LYS A 222 REMARK 465 THR A 223 REMARK 465 GLN A 224 REMARK 465 SER A 225 REMARK 465 GLU A 226 REMARK 465 SER A 227 REMARK 465 GLY A 228 REMARK 465 ASP A 229 REMARK 465 VAL A 230 REMARK 465 SER A 231 REMARK 465 ARG A 232 REMARK 465 ASN A 233 REMARK 465 THR A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 LYS A 237 REMARK 465 LYS A 238 REMARK 465 LEU A 239 REMARK 465 GLN A 240 REMARK 465 ILE A 241 REMARK 465 PHE A 242 REMARK 465 GLY A 243 REMARK 465 ALA A 244 REMARK 465 GLY A 245 REMARK 465 PRO A 246 REMARK 465 LYS A 247 REMARK 465 VAL A 248 REMARK 465 VAL A 249 REMARK 465 GLY A 250 REMARK 465 LEU A 251 REMARK 465 ALA A 252 REMARK 465 MET A 253 REMARK 465 GLY A 254 REMARK 465 THR A 255 REMARK 465 LYS A 256 REMARK 465 ASP A 257 REMARK 465 LYS A 258 REMARK 465 GLU A 259 REMARK 465 ASP A 260 REMARK 465 GLU A 261 REMARK 465 VAL A 262 REMARK 465 THR A 263 REMARK 465 ARG A 264 REMARK 465 ARG A 265 REMARK 465 ARG A 266 REMARK 465 LYS A 267 REMARK 465 VAL A 268 REMARK 465 THR A 269 REMARK 465 ASN A 270 REMARK 465 ARG A 271 REMARK 465 SER A 272 REMARK 465 ASP A 273 REMARK 465 ALA A 274 REMARK 465 PHE A 275 REMARK 465 ASN A 276 REMARK 465 MET A 277 REMARK 465 GLN A 278 REMARK 465 MET A 279 REMARK 465 ARG A 280 REMARK 465 GLN A 281 REMARK 465 ARG A 282 REMARK 465 LYS A 283 REMARK 465 GLY A 284 REMARK 465 THR A 285 REMARK 465 LEU A 286 REMARK 465 SER A 287 REMARK 465 VAL A 288 REMARK 465 ASN A 289 REMARK 465 PHE A 290 REMARK 465 VAL A 291 REMARK 465 ASP A 292 REMARK 465 LEU A 293 REMARK 465 TYR A 294 REMARK 465 VAL A 295 REMARK 465 CYS A 296 REMARK 465 MET A 297 REMARK 465 PHE A 298 REMARK 465 CYS A 299 REMARK 465 GLY A 300 REMARK 465 ARG A 301 REMARK 465 GLY A 302 REMARK 465 ASN A 303 REMARK 465 ASN A 304 REMARK 465 GLU A 305 REMARK 465 ASP A 306 REMARK 465 LYS A 307 REMARK 465 LEU A 308 REMARK 465 LEU A 309 REMARK 465 LEU A 310 REMARK 465 CYS A 311 REMARK 465 ASP A 312 REMARK 465 GLY A 313 REMARK 465 CYS A 314 REMARK 465 ASP A 315 REMARK 465 ASP A 316 REMARK 465 SER A 317 REMARK 465 TYR A 318 REMARK 465 HIS A 319 REMARK 465 THR A 320 REMARK 465 PHE A 321 REMARK 465 CYS A 322 REMARK 465 LEU A 323 REMARK 465 ILE A 324 REMARK 465 PRO A 325 REMARK 465 PRO A 326 REMARK 465 LEU A 327 REMARK 465 PRO A 328 REMARK 465 ASP A 329 REMARK 465 VAL A 330 REMARK 465 PRO A 331 REMARK 465 LYS A 332 REMARK 465 GLY A 333 REMARK 465 ASP A 334 REMARK 465 TRP A 335 REMARK 465 ARG A 336 REMARK 465 CYS A 337 REMARK 465 PRO A 338 REMARK 465 LYS A 339 REMARK 465 CYS A 340 REMARK 465 VAL A 341 REMARK 465 ALA A 342 REMARK 465 GLU A 343 REMARK 465 GLU A 344 REMARK 465 CYS A 345 REMARK 465 SER A 346 REMARK 465 LYS A 347 REMARK 465 PRO A 348 REMARK 465 ARG A 349 REMARK 465 GLU A 350 REMARK 465 ALA A 351 REMARK 465 PHE A 352 REMARK 465 GLY A 353 REMARK 465 PHE A 354 REMARK 465 GLU A 355 REMARK 465 GLN A 356 REMARK 465 ALA A 357 REMARK 465 VAL A 358 REMARK 465 ARG A 359 REMARK 465 GLU A 360 REMARK 465 ARG A 745 REMARK 465 VAL A 746 REMARK 465 THR A 747 REMARK 465 GLU A 748 REMARK 465 ALA A 749 REMARK 465 LEU A 750 REMARK 465 SER A 751 REMARK 465 ALA A 752 REMARK 465 ASN A 753 REMARK 465 PHE A 754 REMARK 465 ASN A 755 REMARK 465 HIS A 756 REMARK 465 LYS A 757 REMARK 465 LYS A 758 REMARK 465 ASP A 759 REMARK 465 LEU A 760 REMARK 465 ILE A 761 REMARK 465 GLU A 762 REMARK 465 LEU A 763 REMARK 465 ARG A 764 REMARK 465 ASP A 786 REMARK 465 ALA A 787 REMARK 465 VAL A 788 REMARK 465 LYS A 789 REMARK 465 GLU A 790 REMARK 465 ALA A 791 REMARK 465 GLU A 792 REMARK 465 THR A 793 REMARK 465 CYS A 794 REMARK 465 ALA A 795 REMARK 465 SER A 796 REMARK 465 VAL A 797 REMARK 465 GLY A 798 REMARK 465 ASN A 799 REMARK 465 SER A 800 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 470 MET A 179 CG SD CE REMARK 470 VAL A 181 CG1 CG2 REMARK 470 GLU A 402 CG CD OE1 OE2 REMARK 470 LYS A 430 CG CD CE NZ REMARK 470 ASN A 460 CG OD1 ND2 REMARK 470 VAL A 461 CG1 CG2 REMARK 470 ASP A 462 CG OD1 OD2 REMARK 470 LYS A 637 CG CD CE NZ REMARK 470 ARG A 650 CG CD NE CZ NH1 NH2 REMARK 470 MET A 711 CG SD CE REMARK 470 GLN A 712 CG CD OE1 NE2 REMARK 470 LYS A 713 CG CD CE NZ REMARK 470 LYS A 714 CG CD CE NZ REMARK 470 ARG A 717 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 733 CG CD CE NZ REMARK 470 GLU A 777 CG CD OE1 OE2 REMARK 470 ASN A 778 CG OD1 ND2 REMARK 470 ARG A 782 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 784 CG CD1 CD2 REMARK 470 ARG A 785 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 457 N ILE A 459 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CZ ARG A 428 NH2 ARG A 428 6977 1.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 428 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 42 -61.67 -98.19 REMARK 500 VAL A 65 -53.24 -130.80 REMARK 500 ARG A 112 -15.84 77.86 REMARK 500 PHE A 130 -70.96 -56.49 REMARK 500 LYS A 152 -4.40 -59.55 REMARK 500 ILE A 165 -58.72 -129.27 REMARK 500 VAL A 176 -118.50 50.23 REMARK 500 SER A 177 -143.86 59.09 REMARK 500 LEU A 178 75.48 59.31 REMARK 500 MET A 179 -79.74 -100.02 REMARK 500 ALA A 411 -177.86 -172.02 REMARK 500 ALA A 457 -145.25 -69.19 REMARK 500 HIS A 458 -19.98 -30.18 REMARK 500 VAL A 461 -71.01 -139.11 REMARK 500 PHE A 477 -7.74 77.65 REMARK 500 TRP A 488 -116.06 59.67 REMARK 500 SER A 489 -152.94 56.59 REMARK 500 LEU A 659 -67.43 -121.23 REMARK 500 CYS A 679 -64.35 -137.34 REMARK 500 PHE A 684 -60.40 -132.99 REMARK 500 MET A 711 -73.39 -48.49 REMARK 500 GLN A 712 -114.32 50.66 REMARK 500 LYS A 714 -151.18 53.22 REMARK 500 LEU A 722 -0.67 94.68 REMARK 500 GLU A 777 -86.18 -126.16 REMARK 500 ASN A 778 -143.32 44.08 REMARK 500 ASP A 779 -120.12 37.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 778 ASP A 779 133.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 901 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 483 NE2 REMARK 620 2 GLU A 485 OE2 97.7 REMARK 620 3 HIS A 571 NE2 86.3 95.9 REMARK 620 4 HOH A1001 O 169.3 73.1 89.1 REMARK 620 5 50P A 904 N16 104.3 152.5 101.6 86.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 676 SG REMARK 620 2 CYS A 679 SG 115.4 REMARK 620 3 CYS A 699 SG 110.2 109.6 REMARK 620 4 HIS A 702 ND1 119.4 90.2 110.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 903 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 690 SG REMARK 620 2 CYS A 692 SG 161.7 REMARK 620 3 CYS A 707 SG 110.9 50.8 REMARK 620 4 CYS A 709 SG 120.2 63.4 84.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 50P A 904 DBREF 5CEH A 12 797 UNP P29375 KDM5A_HUMAN 12 797 DBREF 5CEH B 905 914 PDB 5CEH 5CEH 905 914 SEQADV 5CEH SER A 11 UNP P29375 EXPRESSION TAG SEQADV 5CEH GLY A 798 UNP P29375 EXPRESSION TAG SEQADV 5CEH ASN A 799 UNP P29375 EXPRESSION TAG SEQADV 5CEH SER A 800 UNP P29375 EXPRESSION TAG SEQRES 1 A 790 SER GLU PHE VAL PRO PRO PRO GLU CYS PRO VAL PHE GLU SEQRES 2 A 790 PRO SER TRP GLU GLU PHE THR ASP PRO LEU SER PHE ILE SEQRES 3 A 790 GLY ARG ILE ARG PRO LEU ALA GLU LYS THR GLY ILE CYS SEQRES 4 A 790 LYS ILE ARG PRO PRO LYS ASP TRP GLN PRO PRO PHE ALA SEQRES 5 A 790 CYS GLU VAL LYS SER PHE ARG PHE THR PRO ARG VAL GLN SEQRES 6 A 790 ARG LEU ASN GLU LEU GLU ALA MET THR ARG VAL ARG LEU SEQRES 7 A 790 ASP PHE LEU ASP GLN LEU ALA LYS PHE TRP GLU LEU GLN SEQRES 8 A 790 GLY SER THR LEU LYS ILE PRO VAL VAL GLU ARG LYS ILE SEQRES 9 A 790 LEU ASP LEU TYR ALA LEU SER LYS ILE VAL ALA SER LYS SEQRES 10 A 790 GLY GLY PHE GLU MET VAL THR LYS GLU LYS LYS TRP SER SEQRES 11 A 790 LYS VAL GLY SER ARG LEU GLY TYR LEU PRO GLY LYS GLY SEQRES 12 A 790 THR GLY SER LEU LEU LYS SER HIS TYR GLU ARG ILE LEU SEQRES 13 A 790 TYR PRO TYR GLU LEU PHE GLN SER GLY VAL SER LEU MET SEQRES 14 A 790 GLY VAL GLN MET PRO ASN LEU ASP LEU LYS GLU LYS VAL SEQRES 15 A 790 GLU PRO GLU VAL LEU SER THR ASP THR GLN THR SER PRO SEQRES 16 A 790 GLU PRO GLY THR ARG MET ASN ILE LEU PRO LYS ARG THR SEQRES 17 A 790 ARG ARG VAL LYS THR GLN SER GLU SER GLY ASP VAL SER SEQRES 18 A 790 ARG ASN THR GLU LEU LYS LYS LEU GLN ILE PHE GLY ALA SEQRES 19 A 790 GLY PRO LYS VAL VAL GLY LEU ALA MET GLY THR LYS ASP SEQRES 20 A 790 LYS GLU ASP GLU VAL THR ARG ARG ARG LYS VAL THR ASN SEQRES 21 A 790 ARG SER ASP ALA PHE ASN MET GLN MET ARG GLN ARG LYS SEQRES 22 A 790 GLY THR LEU SER VAL ASN PHE VAL ASP LEU TYR VAL CYS SEQRES 23 A 790 MET PHE CYS GLY ARG GLY ASN ASN GLU ASP LYS LEU LEU SEQRES 24 A 790 LEU CYS ASP GLY CYS ASP ASP SER TYR HIS THR PHE CYS SEQRES 25 A 790 LEU ILE PRO PRO LEU PRO ASP VAL PRO LYS GLY ASP TRP SEQRES 26 A 790 ARG CYS PRO LYS CYS VAL ALA GLU GLU CYS SER LYS PRO SEQRES 27 A 790 ARG GLU ALA PHE GLY PHE GLU GLN ALA VAL ARG GLU TYR SEQRES 28 A 790 THR LEU GLN SER PHE GLY GLU MET ALA ASP ASN PHE LYS SEQRES 29 A 790 SER ASP TYR PHE ASN MET PRO VAL HIS MET VAL PRO THR SEQRES 30 A 790 GLU LEU VAL GLU LYS GLU PHE TRP ARG LEU VAL SER SER SEQRES 31 A 790 ILE GLU GLU ASP VAL ILE VAL GLU TYR GLY ALA ASP ILE SEQRES 32 A 790 SER SER LYS ASP PHE GLY SER GLY PHE PRO VAL LYS ASP SEQRES 33 A 790 GLY ARG ARG LYS ILE LEU PRO GLU GLU GLU GLU TYR ALA SEQRES 34 A 790 LEU SER GLY TRP ASN LEU ASN ASN MET PRO VAL LEU GLU SEQRES 35 A 790 GLN SER VAL LEU ALA HIS ILE ASN VAL ASP ILE SER GLY SEQRES 36 A 790 MET LYS VAL PRO TRP LEU TYR VAL GLY MET CYS PHE SER SEQRES 37 A 790 SER PHE CYS TRP HIS ILE GLU ASP HIS TRP SER TYR SER SEQRES 38 A 790 ILE ASN TYR LEU HIS TRP GLY GLU PRO LYS THR TRP TYR SEQRES 39 A 790 GLY VAL PRO SER HIS ALA ALA GLU GLN LEU GLU GLU VAL SEQRES 40 A 790 MET ARG GLU LEU ALA PRO GLU LEU PHE GLU SER GLN PRO SEQRES 41 A 790 ASP LEU LEU HIS GLN LEU VAL THR ILE MET ASN PRO ASN SEQRES 42 A 790 VAL LEU MET GLU HIS GLY VAL PRO VAL TYR ARG THR ASN SEQRES 43 A 790 GLN CYS ALA GLY GLU PHE VAL VAL THR PHE PRO ARG ALA SEQRES 44 A 790 TYR HIS SER GLY PHE ASN GLN GLY TYR ASN PHE ALA GLU SEQRES 45 A 790 ALA VAL ASN PHE CYS THR ALA ASP TRP LEU PRO ILE GLY SEQRES 46 A 790 ARG GLN CYS VAL ASN HIS TYR ARG ARG LEU ARG ARG HIS SEQRES 47 A 790 CYS VAL PHE SER HIS GLU GLU LEU ILE PHE LYS MET ALA SEQRES 48 A 790 ALA ASP PRO GLU CYS LEU ASP VAL GLY LEU ALA ALA MET SEQRES 49 A 790 VAL CYS LYS GLU LEU THR LEU MET THR GLU GLU GLU THR SEQRES 50 A 790 ARG LEU ARG GLU SER VAL VAL GLN MET GLY VAL LEU MET SEQRES 51 A 790 SER GLU GLU GLU VAL PHE GLU LEU VAL PRO ASP ASP GLU SEQRES 52 A 790 ARG GLN CYS SER ALA CYS ARG THR THR CYS PHE LEU SER SEQRES 53 A 790 ALA LEU THR CYS SER CYS ASN PRO GLU ARG LEU VAL CYS SEQRES 54 A 790 LEU TYR HIS PRO THR ASP LEU CYS PRO CYS PRO MET GLN SEQRES 55 A 790 LYS LYS CYS LEU ARG TYR ARG TYR PRO LEU GLU ASP LEU SEQRES 56 A 790 PRO SER LEU LEU TYR GLY VAL LYS VAL ARG ALA GLN SER SEQRES 57 A 790 TYR ASP THR TRP VAL SER ARG VAL THR GLU ALA LEU SER SEQRES 58 A 790 ALA ASN PHE ASN HIS LYS LYS ASP LEU ILE GLU LEU ARG SEQRES 59 A 790 VAL MET LEU GLU ASP ALA GLU ASP ARG LYS TYR PRO GLU SEQRES 60 A 790 ASN ASP LEU PHE ARG LYS LEU ARG ASP ALA VAL LYS GLU SEQRES 61 A 790 ALA GLU THR CYS ALA SER VAL GLY ASN SER SEQRES 1 B 10 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK HET NI A 901 1 HET ZN A 902 1 HET ZN A 903 1 HET 50P A 904 21 HETNAM NI NICKEL (II) ION HETNAM ZN ZINC ION HETNAM 50P 7-OXO-5-PHENYL-6-(PROPAN-2-YL)-4,7-DIHYDROPYRAZOLO[1,5- HETNAM 2 50P A]PYRIMIDINE-3-CARBONITRILE FORMUL 3 NI NI 2+ FORMUL 4 ZN 2(ZN 2+) FORMUL 6 50P C16 H14 N4 O FORMUL 7 HOH *7(H2 O) HELIX 1 AA1 ASP A 31 GLU A 44 1 14 HELIX 2 AA2 THR A 84 GLN A 101 1 18 HELIX 3 AA3 ASP A 116 LYS A 127 1 12 HELIX 4 AA4 GLY A 129 GLU A 136 1 8 HELIX 5 AA5 LYS A 138 LEU A 146 1 9 HELIX 6 AA6 GLY A 153 SER A 174 1 22 HELIX 7 AA7 THR A 362 ASN A 379 1 18 HELIX 8 AA8 PRO A 381 VAL A 385 5 5 HELIX 9 AA9 PRO A 386 SER A 400 1 15 HELIX 10 AB1 SER A 414 GLY A 419 1 6 HELIX 11 AB2 LEU A 432 SER A 441 1 10 HELIX 12 AB3 ASN A 447 LEU A 451 5 5 HELIX 13 AB4 PRO A 507 HIS A 509 5 3 HELIX 14 AB5 ALA A 510 GLU A 520 1 11 HELIX 15 AB6 ALA A 522 GLN A 529 1 8 HELIX 16 AB7 ASP A 531 LEU A 536 1 6 HELIX 17 AB8 ASN A 541 HIS A 548 1 8 HELIX 18 AB9 THR A 588 ASP A 590 5 3 HELIX 19 AC1 TRP A 591 LEU A 605 1 15 HELIX 20 AC2 SER A 612 ALA A 622 1 11 HELIX 21 AC3 ASP A 628 MET A 656 1 29 HELIX 22 AC4 VAL A 665 VAL A 669 5 5 HELIX 23 AC5 PRO A 670 ARG A 674 5 5 HELIX 24 AC6 HIS A 702 LEU A 706 5 5 HELIX 25 AC7 GLU A 723 SER A 744 1 22 HELIX 26 AC8 MET A 766 ARG A 773 1 8 HELIX 27 AC9 ASN A 778 ARG A 785 1 8 HELIX 28 AD1 UNK B 907 UNK B 912 1 6 SHEET 1 AA1 6 VAL A 21 PHE A 22 0 SHEET 2 AA1 6 ILE A 48 ILE A 51 1 O LYS A 50 N PHE A 22 SHEET 3 AA1 6 PHE A 562 THR A 565 -1 O PHE A 562 N ILE A 51 SHEET 4 AA1 6 TYR A 490 GLY A 498 -1 N ASN A 493 O VAL A 563 SHEET 5 AA1 6 ASN A 579 PHE A 586 -1 O GLU A 582 N TYR A 494 SHEET 6 AA1 6 TRP A 470 GLY A 474 -1 N TRP A 470 O ALA A 583 SHEET 1 AA2 2 ARG A 73 ARG A 76 0 SHEET 2 AA2 2 ILE A 406 TYR A 409 -1 O VAL A 407 N GLN A 75 SHEET 1 AA3 2 VAL A 109 VAL A 110 0 SHEET 2 AA3 2 LYS A 113 ILE A 114 -1 O LYS A 113 N VAL A 110 SHEET 1 AA4 4 SER A 479 HIS A 483 0 SHEET 2 AA4 4 HIS A 571 ASN A 575 -1 O GLY A 573 N PHE A 480 SHEET 3 AA4 4 LYS A 501 GLY A 505 -1 N THR A 502 O PHE A 574 SHEET 4 AA4 4 TYR A 553 GLN A 557 -1 O GLN A 557 N LYS A 501 SHEET 1 AA5 2 SER A 686 LEU A 688 0 SHEET 2 AA5 2 LEU A 716 TYR A 718 -1 O ARG A 717 N ALA A 687 SSBOND 1 CYS A 692 CYS A 709 1555 1555 2.59 SSBOND 2 CYS A 692 CYS A 707 1555 1555 2.06 LINK NE2 HIS A 483 NI NI A 901 1555 1555 1.99 LINK OE2 GLU A 485 NI NI A 901 1555 1555 1.94 LINK NE2 HIS A 571 NI NI A 901 1555 1555 2.04 LINK SG CYS A 676 ZN ZN A 902 1555 1555 2.55 LINK SG CYS A 679 ZN ZN A 902 1555 1555 2.34 LINK SG CYS A 690 ZN ZN A 903 1555 1555 2.39 LINK SG CYS A 692 ZN ZN A 903 1555 1555 2.18 LINK SG CYS A 699 ZN ZN A 902 1555 1555 2.42 LINK ND1 HIS A 702 ZN ZN A 902 1555 1555 2.14 LINK SG CYS A 707 ZN ZN A 903 1555 1555 2.56 LINK SG CYS A 709 ZN ZN A 903 1555 1555 2.69 LINK C UNK B 905 N UNK B 906 1555 1555 1.33 LINK C UNK B 906 N UNK B 907 1555 1555 1.34 LINK C UNK B 907 N UNK B 908 1555 1555 1.34 LINK C UNK B 908 N UNK B 909 1555 1555 1.34 LINK C UNK B 909 N UNK B 910 1555 1555 1.33 LINK C UNK B 910 N UNK B 911 1555 1555 1.34 LINK C UNK B 911 N UNK B 912 1555 1555 1.33 LINK C UNK B 912 N UNK B 913 1555 1555 1.33 LINK C UNK B 913 N UNK B 914 1555 1555 1.33 LINK NI NI A 901 O HOH A1001 1555 1555 1.86 LINK NI NI A 901 N16 50P A 904 1555 1555 1.96 CISPEP 1 PRO A 150 GLY A 151 0 -7.95 CISPEP 2 GLY A 180 VAL A 181 0 -18.85 CISPEP 3 CYS A 679 ARG A 680 0 -1.58 CISPEP 4 LYS A 714 CYS A 715 0 -27.33 SITE 1 AC1 5 HIS A 483 GLU A 485 HIS A 571 50P A 904 SITE 2 AC1 5 HOH A1001 SITE 1 AC2 4 CYS A 676 CYS A 679 CYS A 699 HIS A 702 SITE 1 AC3 5 CYS A 690 SER A 691 CYS A 692 CYS A 707 SITE 2 AC3 5 CYS A 709 SITE 1 AC4 14 TYR A 409 GLY A 410 ALA A 411 TYR A 472 SITE 2 AC4 14 VAL A 473 SER A 479 PHE A 480 HIS A 483 SITE 3 AC4 14 ASN A 493 LYS A 501 HIS A 571 ASN A 575 SITE 4 AC4 14 NI A 901 HOH A1001 CRYST1 159.306 159.306 92.462 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006277 0.003624 0.000000 0.00000 SCALE2 0.000000 0.007248 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010815 0.00000