HEADER HYDROLASE/RNA 07-JUL-15 5CEU OBSLTE 12-OCT-16 5CEU 5JJU TITLE CRYSTAL STRUCTURE OF RV2837C COMPLEXED WITH 5'-PAPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL OLIGORIBONUCLEASE AND PAP PHOSPHATASE NRNA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 10-336; COMPND 5 SYNONYM: 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE,3'-PHOSPHOADENOSINE 5'- COMPND 6 PHOSPHATE PHOSPHATASE,PAP PHOSPHATASE,NANORNASE; COMPND 7 EC: 3.1.-.-,3.1.3.7; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA (5'-R(P*AP*A)-3'); COMPND 11 CHAIN: C, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: NRNA, RV2837C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 14 ORGANISM_TAXID: 1773 KEYWDS C-DI-AMP, MYCOBACTERIUM TUBERCULOSIS, COMPLEX, PHOSPHODIESTERASE, KEYWDS 2 HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.WANG,Q.HE,D.ZHU,S.LIU,L.GU REVDAT 3 12-OCT-16 5CEU 1 OBSLTE REVDAT 2 24-FEB-16 5CEU 1 JRNL REVDAT 1 23-DEC-15 5CEU 0 JRNL AUTH Q.HE,F.WANG,S.LIU,D.ZHU,H.CONG,F.GAO,B.LI,H.WANG,Z.LIN, JRNL AUTH 2 J.LIAO,L.GU JRNL TITL STRUCTURAL AND BIOCHEMICAL INSIGHT INTO THE MECHANISM OF JRNL TITL 2 RV2837C FROM MYCOBACTERIUM TUBERCULOSIS AS A C-DI-NMP JRNL TITL 3 PHOSPHODIESTERASE JRNL REF J.BIOL.CHEM. V. 291 3668 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26668313 JRNL DOI 10.1074/JBC.M115.699801 REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 23963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6975 - 4.9137 0.92 2724 151 0.1904 0.2488 REMARK 3 2 4.9137 - 3.9007 0.88 2482 140 0.2025 0.2560 REMARK 3 3 3.9007 - 3.4078 0.84 2354 142 0.2432 0.2798 REMARK 3 4 3.4078 - 3.0963 0.94 2615 134 0.2403 0.2757 REMARK 3 5 3.0963 - 2.8744 0.94 2641 137 0.2388 0.3022 REMARK 3 6 2.8744 - 2.7049 0.93 2591 137 0.2420 0.3024 REMARK 3 7 2.7049 - 2.5695 0.91 2510 134 0.2461 0.3204 REMARK 3 8 2.5695 - 2.4576 0.93 2551 135 0.2435 0.3228 REMARK 3 9 2.4576 - 2.3630 0.83 2273 112 0.2435 0.2993 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 30.11 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.09310 REMARK 3 B22 (A**2) : -6.68560 REMARK 3 B33 (A**2) : 17.77870 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4992 REMARK 3 ANGLE : 1.151 6834 REMARK 3 CHIRALITY : 0.073 824 REMARK 3 PLANARITY : 0.005 872 REMARK 3 DIHEDRAL : 17.368 1794 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CEU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211499. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SCALEPACK REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25317 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16900 REMARK 200 FOR THE DATA SET : 21.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 16.31 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5,10% PEG10,000, 5% REMARK 280 MPD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.19800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.37250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.63500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.37250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.19800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.63500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 10 REMARK 465 VAL A 11 REMARK 465 ASP A 12 REMARK 465 GLY A 13 REMARK 465 ARG A 14 REMARK 465 ARG A 15 REMARK 465 ARG A 16 REMARK 465 PRO A 343 REMARK 465 PRO A 344 REMARK 465 PRO A 345 REMARK 465 LEU A 346 REMARK 465 ARG A 347 REMARK 465 SER A 348 REMARK 465 GLY A 349 REMARK 465 CYS A 350 REMARK 465 LEU B 10 REMARK 465 VAL B 11 REMARK 465 ASP B 12 REMARK 465 GLY B 13 REMARK 465 ARG B 14 REMARK 465 ARG B 15 REMARK 465 ARG B 16 REMARK 465 PRO B 343 REMARK 465 PRO B 344 REMARK 465 PRO B 345 REMARK 465 LEU B 346 REMARK 465 ARG B 347 REMARK 465 SER B 348 REMARK 465 GLY B 349 REMARK 465 CYS B 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 310 O HOH A 1101 1.91 REMARK 500 O HOH B 1133 O HOH B 1153 1.99 REMARK 500 O5' A C 1 O HOH C 101 2.07 REMARK 500 O HOH B 1142 O HOH B 1151 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A C 1 P A C 1 OP3 -0.090 REMARK 500 A C 1 C2 A C 1 N3 0.087 REMARK 500 A C 1 N7 A C 1 C8 0.050 REMARK 500 A C 1 N9 A C 1 C4 0.067 REMARK 500 A C 1 C6 A C 1 N6 0.083 REMARK 500 A D 1 P A D 1 OP3 -0.092 REMARK 500 A D 1 C2 A D 1 N3 0.080 REMARK 500 A D 1 N7 A D 1 C8 0.043 REMARK 500 A D 1 N9 A D 1 C4 0.063 REMARK 500 A D 1 C6 A D 1 N6 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A C 1 N1 - C2 - N3 ANGL. DEV. = -9.1 DEGREES REMARK 500 A C 1 C2 - N3 - C4 ANGL. DEV. = 8.3 DEGREES REMARK 500 A C 1 N3 - C4 - C5 ANGL. DEV. = -7.7 DEGREES REMARK 500 A C 1 C4 - C5 - C6 ANGL. DEV. = 4.3 DEGREES REMARK 500 A C 1 N9 - C4 - C5 ANGL. DEV. = 2.7 DEGREES REMARK 500 A C 1 N3 - C4 - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 A D 1 N1 - C2 - N3 ANGL. DEV. = -9.4 DEGREES REMARK 500 A D 1 C2 - N3 - C4 ANGL. DEV. = 7.3 DEGREES REMARK 500 A D 1 N3 - C4 - C5 ANGL. DEV. = -6.6 DEGREES REMARK 500 A D 1 C4 - C5 - C6 ANGL. DEV. = 4.2 DEGREES REMARK 500 A D 1 C5 - N7 - C8 ANGL. DEV. = 3.3 DEGREES REMARK 500 A D 1 N7 - C8 - N9 ANGL. DEV. = -3.7 DEGREES REMARK 500 A D 1 N3 - C4 - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 73 -168.50 -76.05 REMARK 500 ASN A 135 125.37 -36.77 REMARK 500 THR A 220 -36.96 -36.68 REMARK 500 VAL A 284 -4.23 -53.95 REMARK 500 GLU A 285 156.17 168.27 REMARK 500 PRO A 286 110.28 -29.28 REMARK 500 HIS A 287 19.85 52.37 REMARK 500 THR A 297 -18.15 -143.13 REMARK 500 ALA B 19 172.46 -58.67 REMARK 500 VAL B 42 151.65 -49.08 REMARK 500 PRO B 73 -162.66 -71.50 REMARK 500 VAL B 239 73.38 42.50 REMARK 500 HIS B 287 18.28 59.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1002 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 45 OD1 91.9 REMARK 620 3 ASP A 45 OD2 99.1 52.4 REMARK 620 4 ASP A 106 OD1 95.6 94.6 144.0 REMARK 620 5 A C 2 OP1 144.5 109.1 74.1 110.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1001 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD2 REMARK 620 2 ASP A 106 OD2 81.1 REMARK 620 3 HIS A 131 NE2 89.3 87.6 REMARK 620 4 ASP A 181 OD2 81.9 162.5 88.0 REMARK 620 5 A C 2 OP2 167.5 88.7 97.5 108.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1002 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 41 NE2 REMARK 620 2 ASP B 45 OD1 84.4 REMARK 620 3 ASP B 45 OD2 87.4 55.1 REMARK 620 4 ASP B 106 OD2 102.0 98.1 150.9 REMARK 620 5 A D 2 OP1 94.7 161.1 106.0 100.6 REMARK 620 6 HOH D 101 O 161.5 114.0 104.8 74.1 68.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1001 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 47 OD2 REMARK 620 2 ASP B 106 OD1 76.2 REMARK 620 3 HIS B 131 NE2 105.1 88.1 REMARK 620 4 ASP B 181 OD1 90.7 166.8 94.1 REMARK 620 5 HOH D 101 O 119.5 95.4 134.8 92.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CET RELATED DB: PDB DBREF 5CEU A 10 336 UNP P71615 NRNA_MYCTU 10 336 DBREF 5CEU B 10 336 UNP P71615 NRNA_MYCTU 10 336 DBREF 5CEU C 1 2 PDB 5CEU 5CEU 1 2 DBREF 5CEU D 1 2 PDB 5CEU 5CEU 1 2 SEQADV 5CEU LEU A 337 UNP P71615 EXPRESSION TAG SEQADV 5CEU THR A 338 UNP P71615 EXPRESSION TAG SEQADV 5CEU ARG A 339 UNP P71615 EXPRESSION TAG SEQADV 5CEU ALA A 340 UNP P71615 EXPRESSION TAG SEQADV 5CEU PRO A 341 UNP P71615 EXPRESSION TAG SEQADV 5CEU PRO A 342 UNP P71615 EXPRESSION TAG SEQADV 5CEU PRO A 343 UNP P71615 EXPRESSION TAG SEQADV 5CEU PRO A 344 UNP P71615 EXPRESSION TAG SEQADV 5CEU PRO A 345 UNP P71615 EXPRESSION TAG SEQADV 5CEU LEU A 346 UNP P71615 EXPRESSION TAG SEQADV 5CEU ARG A 347 UNP P71615 EXPRESSION TAG SEQADV 5CEU SER A 348 UNP P71615 EXPRESSION TAG SEQADV 5CEU GLY A 349 UNP P71615 EXPRESSION TAG SEQADV 5CEU CYS A 350 UNP P71615 EXPRESSION TAG SEQADV 5CEU LEU B 337 UNP P71615 EXPRESSION TAG SEQADV 5CEU THR B 338 UNP P71615 EXPRESSION TAG SEQADV 5CEU ARG B 339 UNP P71615 EXPRESSION TAG SEQADV 5CEU ALA B 340 UNP P71615 EXPRESSION TAG SEQADV 5CEU PRO B 341 UNP P71615 EXPRESSION TAG SEQADV 5CEU PRO B 342 UNP P71615 EXPRESSION TAG SEQADV 5CEU PRO B 343 UNP P71615 EXPRESSION TAG SEQADV 5CEU PRO B 344 UNP P71615 EXPRESSION TAG SEQADV 5CEU PRO B 345 UNP P71615 EXPRESSION TAG SEQADV 5CEU LEU B 346 UNP P71615 EXPRESSION TAG SEQADV 5CEU ARG B 347 UNP P71615 EXPRESSION TAG SEQADV 5CEU SER B 348 UNP P71615 EXPRESSION TAG SEQADV 5CEU GLY B 349 UNP P71615 EXPRESSION TAG SEQADV 5CEU CYS B 350 UNP P71615 EXPRESSION TAG SEQRES 1 A 341 LEU VAL ASP GLY ARG ARG ARG ALA GLY ALA ARG VAL ASP SEQRES 2 A 341 ALA VAL GLY ALA ALA ALA LEU LEU SER ALA ALA ALA ARG SEQRES 3 A 341 VAL GLY VAL VAL CYS HIS VAL HIS PRO ASP ALA ASP THR SEQRES 4 A 341 ILE GLY ALA GLY LEU ALA LEU ALA LEU VAL LEU ASP GLY SEQRES 5 A 341 CYS GLY LYS ARG VAL GLU VAL SER PHE ALA ALA PRO ALA SEQRES 6 A 341 THR LEU PRO GLU SER LEU ARG SER LEU PRO GLY CYS HIS SEQRES 7 A 341 LEU LEU VAL ARG PRO GLU VAL MET ARG ARG ASP VAL ASP SEQRES 8 A 341 LEU VAL VAL THR VAL ASP ILE PRO SER VAL ASP ARG LEU SEQRES 9 A 341 GLY ALA LEU GLY ASP LEU THR ASP SER GLY ARG GLU LEU SEQRES 10 A 341 LEU VAL ILE ASP HIS HIS ALA SER ASN ASP LEU PHE GLY SEQRES 11 A 341 THR ALA ASN PHE ILE ASP PRO SER ALA ASP SER THR THR SEQRES 12 A 341 THR MET VAL ALA GLU ILE LEU ASP ALA TRP GLY LYS PRO SEQRES 13 A 341 ILE ASP PRO ARG VAL ALA HIS CYS ILE TYR ALA GLY LEU SEQRES 14 A 341 ALA THR ASP THR GLY SER PHE ARG TRP ALA SER VAL ARG SEQRES 15 A 341 GLY TYR ARG LEU ALA ALA ARG LEU VAL GLU ILE GLY VAL SEQRES 16 A 341 ASP ASN ALA THR VAL SER ARG THR LEU MET ASP SER HIS SEQRES 17 A 341 PRO PHE THR TRP LEU PRO LEU LEU SER ARG VAL LEU GLY SEQRES 18 A 341 SER ALA GLN LEU VAL SER GLU ALA VAL GLY GLY ARG GLY SEQRES 19 A 341 LEU VAL TYR VAL VAL VAL ASP ASN ARG GLU TRP VAL ALA SEQRES 20 A 341 ALA ARG SER GLU GLU VAL GLU SER ILE VAL ASP ILE VAL SEQRES 21 A 341 ARG THR THR GLN GLN ALA GLU VAL ALA ALA VAL PHE LYS SEQRES 22 A 341 GLU VAL GLU PRO HIS ARG TRP SER VAL SER MET ARG ALA SEQRES 23 A 341 LYS THR VAL ASN LEU ALA ALA VAL ALA SER GLY PHE GLY SEQRES 24 A 341 GLY GLY GLY HIS ARG LEU ALA ALA GLY TYR THR THR THR SEQRES 25 A 341 GLY SER ILE ASP ASP ALA VAL ALA SER LEU ARG ALA ALA SEQRES 26 A 341 LEU GLY LEU THR ARG ALA PRO PRO PRO PRO PRO LEU ARG SEQRES 27 A 341 SER GLY CYS SEQRES 1 B 341 LEU VAL ASP GLY ARG ARG ARG ALA GLY ALA ARG VAL ASP SEQRES 2 B 341 ALA VAL GLY ALA ALA ALA LEU LEU SER ALA ALA ALA ARG SEQRES 3 B 341 VAL GLY VAL VAL CYS HIS VAL HIS PRO ASP ALA ASP THR SEQRES 4 B 341 ILE GLY ALA GLY LEU ALA LEU ALA LEU VAL LEU ASP GLY SEQRES 5 B 341 CYS GLY LYS ARG VAL GLU VAL SER PHE ALA ALA PRO ALA SEQRES 6 B 341 THR LEU PRO GLU SER LEU ARG SER LEU PRO GLY CYS HIS SEQRES 7 B 341 LEU LEU VAL ARG PRO GLU VAL MET ARG ARG ASP VAL ASP SEQRES 8 B 341 LEU VAL VAL THR VAL ASP ILE PRO SER VAL ASP ARG LEU SEQRES 9 B 341 GLY ALA LEU GLY ASP LEU THR ASP SER GLY ARG GLU LEU SEQRES 10 B 341 LEU VAL ILE ASP HIS HIS ALA SER ASN ASP LEU PHE GLY SEQRES 11 B 341 THR ALA ASN PHE ILE ASP PRO SER ALA ASP SER THR THR SEQRES 12 B 341 THR MET VAL ALA GLU ILE LEU ASP ALA TRP GLY LYS PRO SEQRES 13 B 341 ILE ASP PRO ARG VAL ALA HIS CYS ILE TYR ALA GLY LEU SEQRES 14 B 341 ALA THR ASP THR GLY SER PHE ARG TRP ALA SER VAL ARG SEQRES 15 B 341 GLY TYR ARG LEU ALA ALA ARG LEU VAL GLU ILE GLY VAL SEQRES 16 B 341 ASP ASN ALA THR VAL SER ARG THR LEU MET ASP SER HIS SEQRES 17 B 341 PRO PHE THR TRP LEU PRO LEU LEU SER ARG VAL LEU GLY SEQRES 18 B 341 SER ALA GLN LEU VAL SER GLU ALA VAL GLY GLY ARG GLY SEQRES 19 B 341 LEU VAL TYR VAL VAL VAL ASP ASN ARG GLU TRP VAL ALA SEQRES 20 B 341 ALA ARG SER GLU GLU VAL GLU SER ILE VAL ASP ILE VAL SEQRES 21 B 341 ARG THR THR GLN GLN ALA GLU VAL ALA ALA VAL PHE LYS SEQRES 22 B 341 GLU VAL GLU PRO HIS ARG TRP SER VAL SER MET ARG ALA SEQRES 23 B 341 LYS THR VAL ASN LEU ALA ALA VAL ALA SER GLY PHE GLY SEQRES 24 B 341 GLY GLY GLY HIS ARG LEU ALA ALA GLY TYR THR THR THR SEQRES 25 B 341 GLY SER ILE ASP ASP ALA VAL ALA SER LEU ARG ALA ALA SEQRES 26 B 341 LEU GLY LEU THR ARG ALA PRO PRO PRO PRO PRO LEU ARG SEQRES 27 B 341 SER GLY CYS SEQRES 1 C 2 A A SEQRES 1 D 2 A A HET MN A1001 1 HET MN A1002 1 HET MN B1001 1 HET MN B1002 1 HETNAM MN MANGANESE (II) ION FORMUL 5 MN 4(MN 2+) FORMUL 9 HOH *131(H2 O) HELIX 1 AA1 ASP A 22 ALA A 33 1 12 HELIX 2 AA2 ASP A 45 GLY A 61 1 17 HELIX 3 AA3 PRO A 77 LEU A 83 5 7 HELIX 4 AA4 GLY A 85 LEU A 89 5 5 HELIX 5 AA5 SER A 109 LEU A 116 5 8 HELIX 6 AA6 GLY A 117 SER A 122 1 6 HELIX 7 AA7 SER A 150 GLY A 163 1 14 HELIX 8 AA8 ASP A 167 THR A 182 1 16 HELIX 9 AA9 SER A 189 GLY A 203 1 15 HELIX 10 AB1 ASP A 205 ASP A 215 1 11 HELIX 11 AB2 THR A 220 SER A 231 1 12 HELIX 12 AB3 ASP A 250 ALA A 257 1 8 HELIX 13 AB4 ARG A 258 VAL A 262 5 5 HELIX 14 AB5 ILE A 265 ARG A 270 1 6 HELIX 15 AB6 LEU A 300 GLY A 306 1 7 HELIX 16 AB7 SER A 323 GLY A 336 1 14 HELIX 17 AB8 ASP B 22 ALA B 33 1 12 HELIX 18 AB9 ASP B 45 GLY B 61 1 17 HELIX 19 AC1 PRO B 77 LEU B 83 5 7 HELIX 20 AC2 GLY B 85 LEU B 89 5 5 HELIX 21 AC3 SER B 109 LEU B 116 5 8 HELIX 22 AC4 GLY B 117 SER B 122 1 6 HELIX 23 AC5 SER B 150 GLY B 163 1 14 HELIX 24 AC6 ASP B 167 THR B 182 1 16 HELIX 25 AC7 SER B 189 GLY B 203 1 15 HELIX 26 AC8 ASP B 205 ASP B 215 1 11 HELIX 27 AC9 THR B 220 SER B 231 1 12 HELIX 28 AD1 ASP B 250 ALA B 257 1 8 HELIX 29 AD2 ARG B 258 GLU B 263 1 6 HELIX 30 AD3 SER B 264 ARG B 270 1 7 HELIX 31 AD4 ASN B 299 PHE B 307 1 9 HELIX 32 AD5 SER B 323 LEU B 337 1 15 SHEET 1 AA1 5 ARG A 65 SER A 69 0 SHEET 2 AA1 5 ARG A 35 VAL A 39 1 N VAL A 38 O GLU A 67 SHEET 3 AA1 5 LEU A 101 VAL A 105 1 O VAL A 103 N VAL A 39 SHEET 4 AA1 5 LEU A 126 ASP A 130 1 O ILE A 129 N THR A 104 SHEET 5 AA1 5 ALA A 141 ILE A 144 1 O ALA A 141 N VAL A 128 SHEET 1 AA2 6 GLN A 233 VAL A 235 0 SHEET 2 AA2 6 LEU A 244 VAL A 249 -1 O LEU A 244 N VAL A 235 SHEET 3 AA2 6 VAL A 277 GLU A 285 1 O PHE A 281 N VAL A 249 SHEET 4 AA2 6 ARG A 288 ALA A 295 -1 O ARG A 288 N GLU A 285 SHEET 5 AA2 6 ALA A 315 THR A 321 -1 O TYR A 318 N VAL A 291 SHEET 6 AA2 6 GLY A 310 HIS A 312 -1 N HIS A 312 O ALA A 315 SHEET 1 AA3 5 ARG B 65 SER B 69 0 SHEET 2 AA3 5 ARG B 35 CYS B 40 1 N VAL B 38 O GLU B 67 SHEET 3 AA3 5 LEU B 101 VAL B 105 1 O VAL B 103 N VAL B 39 SHEET 4 AA3 5 LEU B 126 ASP B 130 1 O LEU B 127 N VAL B 102 SHEET 5 AA3 5 ALA B 141 ILE B 144 1 O PHE B 143 N VAL B 128 SHEET 1 AA4 6 GLN B 233 VAL B 235 0 SHEET 2 AA4 6 LEU B 244 VAL B 249 -1 O LEU B 244 N VAL B 235 SHEET 3 AA4 6 VAL B 277 GLU B 285 1 O GLU B 283 N VAL B 249 SHEET 4 AA4 6 ARG B 288 ALA B 295 -1 O ARG B 288 N GLU B 285 SHEET 5 AA4 6 ALA B 315 THR B 321 -1 O TYR B 318 N VAL B 291 SHEET 6 AA4 6 GLY B 310 HIS B 312 -1 N HIS B 312 O ALA B 315 LINK NE2 HIS A 41 MN MN A1002 1555 1555 2.33 LINK OD1 ASP A 45 MN MN A1002 1555 1555 2.61 LINK OD2 ASP A 45 MN MN A1002 1555 1555 2.30 LINK OD2 ASP A 47 MN MN A1001 1555 1555 2.37 LINK OD1 ASP A 106 MN MN A1002 1555 1555 2.07 LINK OD2 ASP A 106 MN MN A1001 1555 1555 2.41 LINK NE2 HIS A 131 MN MN A1001 1555 1555 2.26 LINK OD2 ASP A 181 MN MN A1001 1555 1555 2.15 LINK NE2 HIS B 41 MN MN B1002 1555 1555 2.52 LINK OD1 ASP B 45 MN MN B1002 1555 1555 2.57 LINK OD2 ASP B 45 MN MN B1002 1555 1555 2.11 LINK OD2 ASP B 47 MN MN B1001 1555 1555 2.13 LINK OD1 ASP B 106 MN MN B1001 1555 1555 2.21 LINK OD2 ASP B 106 MN MN B1002 1555 1555 1.98 LINK NE2 HIS B 131 MN MN B1001 1555 1555 2.20 LINK OD1 ASP B 181 MN MN B1001 1555 1555 2.06 LINK OP1 A C 2 MN MN A1002 1555 1555 1.97 LINK OP2 A C 2 MN MN A1001 1555 1555 2.52 LINK OP1 A D 2 MN MN B1002 1555 1555 2.21 LINK MN MN B1001 O HOH D 101 1555 1555 2.19 LINK MN MN B1002 O HOH D 101 1555 1555 2.69 CISPEP 1 ALA A 72 PRO A 73 0 2.41 CISPEP 2 ALA B 72 PRO B 73 0 -1.46 SITE 1 AC1 5 ASP A 47 ASP A 106 HIS A 131 ASP A 181 SITE 2 AC1 5 A C 2 SITE 1 AC2 4 HIS A 41 ASP A 45 ASP A 106 A C 2 SITE 1 AC3 6 ASP B 47 ASP B 106 HIS B 131 ASP B 181 SITE 2 AC3 6 A D 2 HOH D 101 SITE 1 AC4 5 HIS B 41 ASP B 45 ASP B 106 A D 2 SITE 2 AC4 5 HOH D 101 CRYST1 58.396 99.270 108.745 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017124 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009196 0.00000