HEADER TRANSFERASE 08-JUL-15 5CF7 OBSLTE 31-MAY-17 5CF7 5NJI TITLE STRUCTURE OF THE DEHYDRATASE DOMAIN OF PPSC FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS IN COMPLEX WITH COA DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHTHIOCEROL SYNTHESIS POLYKETIDE SYNTHASE TYPE I PPSC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 921-1222; COMPND 5 SYNONYM: BETA-KETOACYL-ACYL-CARRIER-PROTEIN SYNTHASE I; COMPND 6 EC: 2.3.1.41; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: PPSC, RV2933; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DEHYDRATASE, POLYKETIDE, COMPLEX, TUBERCULOSIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GAVALDA,A.FAILLE,L.MOUREY,J.D.PEDELACQ REVDAT 3 08-DEC-21 5CF7 1 OBSLTE REVDAT 2 31-MAY-17 5CF7 1 OBSLTE REVDAT 1 17-AUG-16 5CF7 0 JRNL AUTH A.FAILLE,S.GAVALDA,N.SLAMA,C.LHERBET,V.GUILLET,F.LAVAL, JRNL AUTH 2 A.QUEMARD,L.MOUREY,J.D.PEDELACQ JRNL TITL NEW INSIGHTS INTO SUBSTRATE MODIFICATION BY DEHYDRATASES JRNL TITL 2 FROM TYPE-I FATTY ACID SYNTHASES AND POLYKETIDE SYNTHASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 43993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.740 REMARK 3 FREE R VALUE TEST SET COUNT : 1644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1583 - 3.6623 0.99 3625 141 0.1270 0.1613 REMARK 3 2 3.6623 - 2.9071 1.00 3578 138 0.1498 0.1849 REMARK 3 3 2.9071 - 2.5397 1.00 3558 139 0.1624 0.1750 REMARK 3 4 2.5397 - 2.3075 1.00 3571 139 0.1544 0.1641 REMARK 3 5 2.3075 - 2.1421 0.97 3433 132 0.1838 0.2388 REMARK 3 6 2.1421 - 2.0158 1.00 3558 138 0.1676 0.1790 REMARK 3 7 2.0158 - 1.9149 0.96 3437 134 0.2261 0.2671 REMARK 3 8 1.9149 - 1.8315 0.96 3430 133 0.2369 0.2891 REMARK 3 9 1.8315 - 1.7610 1.00 3498 136 0.1879 0.2303 REMARK 3 10 1.7610 - 1.7003 1.00 3549 138 0.1869 0.2443 REMARK 3 11 1.7003 - 1.6471 1.00 3559 138 0.2141 0.2483 REMARK 3 12 1.6471 - 1.6000 1.00 3553 138 0.2500 0.2826 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2205 REMARK 3 ANGLE : 1.508 3028 REMARK 3 CHIRALITY : 0.061 357 REMARK 3 PLANARITY : 0.008 383 REMARK 3 DIHEDRAL : 14.385 789 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 926 THROUGH 1017 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6897 -3.9032 40.7270 REMARK 3 T TENSOR REMARK 3 T11: 0.1470 T22: 0.1146 REMARK 3 T33: 0.1544 T12: 0.0090 REMARK 3 T13: 0.0165 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 3.0033 L22: 1.1107 REMARK 3 L33: 1.0060 L12: 1.0636 REMARK 3 L13: 0.6195 L23: 0.5371 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: -0.0716 S13: -0.0196 REMARK 3 S21: -0.0041 S22: 0.0092 S23: -0.1364 REMARK 3 S31: 0.0416 S32: 0.0628 S33: -0.0409 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1018 THROUGH 1045 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9181 4.4339 40.6827 REMARK 3 T TENSOR REMARK 3 T11: 0.0915 T22: 0.1892 REMARK 3 T33: 0.2390 T12: -0.0109 REMARK 3 T13: 0.0159 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 5.3680 L22: 4.6421 REMARK 3 L33: 4.5944 L12: 0.7450 REMARK 3 L13: 0.1712 L23: 0.6018 REMARK 3 S TENSOR REMARK 3 S11: 0.1438 S12: 0.1736 S13: 0.5009 REMARK 3 S21: -0.1694 S22: 0.1138 S23: -0.1788 REMARK 3 S31: -0.1842 S32: 0.6775 S33: -0.2155 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1046 THROUGH 1179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3186 -9.4176 42.5923 REMARK 3 T TENSOR REMARK 3 T11: 0.1440 T22: 0.1310 REMARK 3 T33: 0.1715 T12: -0.0225 REMARK 3 T13: 0.0173 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.6845 L22: 1.8958 REMARK 3 L33: 1.8814 L12: 0.3425 REMARK 3 L13: -0.3200 L23: 0.4262 REMARK 3 S TENSOR REMARK 3 S11: -0.0238 S12: -0.0103 S13: 0.0214 REMARK 3 S21: -0.0042 S22: -0.0409 S23: 0.2490 REMARK 3 S31: 0.1088 S32: -0.1751 S33: 0.0487 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1180 THROUGH 1217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2511 -1.9405 46.0233 REMARK 3 T TENSOR REMARK 3 T11: 0.1266 T22: 0.1287 REMARK 3 T33: 0.1761 T12: -0.0063 REMARK 3 T13: 0.0250 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 3.3355 L22: 6.7812 REMARK 3 L33: 3.3148 L12: -2.5479 REMARK 3 L13: 1.9619 L23: -3.8967 REMARK 3 S TENSOR REMARK 3 S11: 0.0973 S12: -0.0961 S13: 0.1296 REMARK 3 S21: -0.0261 S22: -0.0155 S23: 0.2901 REMARK 3 S31: 0.0185 S32: -0.1095 S33: -0.0907 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CF7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 LIGAND ISSUES REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211524. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979220 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53493 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 41.145 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 5I0K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA/K PO4 1.8 M, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.68850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.40500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.68850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.40500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 900 REMARK 465 GLY A 901 REMARK 465 SER A 902 REMARK 465 SER A 903 REMARK 465 HIS A 904 REMARK 465 HIS A 905 REMARK 465 HIS A 906 REMARK 465 HIS A 907 REMARK 465 HIS A 908 REMARK 465 HIS A 909 REMARK 465 SER A 910 REMARK 465 SER A 911 REMARK 465 GLY A 912 REMARK 465 LEU A 913 REMARK 465 VAL A 914 REMARK 465 PRO A 915 REMARK 465 ARG A 916 REMARK 465 GLY A 917 REMARK 465 SER A 918 REMARK 465 HIS A 919 REMARK 465 MET A 920 REMARK 465 ALA A 921 REMARK 465 TYR A 922 REMARK 465 HIS A 923 REMARK 465 ARG A 924 REMARK 465 PRO A 925 REMARK 465 ASP A 1053 REMARK 465 HIS A 1054 REMARK 465 GLU A 1055 REMARK 465 GLY A 1056 REMARK 465 GLN A 1057 REMARK 465 ARG A 1058 REMARK 465 ARG A 1059 REMARK 465 GLU A 1060 REMARK 465 VAL A 1061 REMARK 465 THR A 1062 REMARK 465 THR A 1063 REMARK 465 ALA A 1064 REMARK 465 GLY A 1147 REMARK 465 GLN A 1148 REMARK 465 ASP A 1149 REMARK 465 ALA A 1150 REMARK 465 ARG A 1151 REMARK 465 GLN A 1152 REMARK 465 GLY A 1153 REMARK 465 PRO A 1154 REMARK 465 SER A 1155 REMARK 465 SER A 1156 REMARK 465 ASN A 1157 REMARK 465 GLY A 1218 REMARK 465 SER A 1219 REMARK 465 GLY A 1220 REMARK 465 SER A 1221 REMARK 465 GLY A 1222 REMARK 465 GLY A 1223 REMARK 465 SER A 1224 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1522 O HOH A 1584 2.17 REMARK 500 O HOH A 1411 O HOH A 1627 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1029 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 954 -123.01 46.89 REMARK 500 ASP A 963 -6.81 76.76 REMARK 500 SER A1030 -97.19 -100.39 REMARK 500 SER A1030 -97.19 -104.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1693 DISTANCE = 5.84 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8Z2 A 1301 DBREF 5CF7 A 921 1222 UNP P96202 PPSC_MYCTU 921 1222 SEQADV 5CF7 MET A 900 UNP P96202 INITIATING METHIONINE SEQADV 5CF7 GLY A 901 UNP P96202 EXPRESSION TAG SEQADV 5CF7 SER A 902 UNP P96202 EXPRESSION TAG SEQADV 5CF7 SER A 903 UNP P96202 EXPRESSION TAG SEQADV 5CF7 HIS A 904 UNP P96202 EXPRESSION TAG SEQADV 5CF7 HIS A 905 UNP P96202 EXPRESSION TAG SEQADV 5CF7 HIS A 906 UNP P96202 EXPRESSION TAG SEQADV 5CF7 HIS A 907 UNP P96202 EXPRESSION TAG SEQADV 5CF7 HIS A 908 UNP P96202 EXPRESSION TAG SEQADV 5CF7 HIS A 909 UNP P96202 EXPRESSION TAG SEQADV 5CF7 SER A 910 UNP P96202 EXPRESSION TAG SEQADV 5CF7 SER A 911 UNP P96202 EXPRESSION TAG SEQADV 5CF7 GLY A 912 UNP P96202 EXPRESSION TAG SEQADV 5CF7 LEU A 913 UNP P96202 EXPRESSION TAG SEQADV 5CF7 VAL A 914 UNP P96202 EXPRESSION TAG SEQADV 5CF7 PRO A 915 UNP P96202 EXPRESSION TAG SEQADV 5CF7 ARG A 916 UNP P96202 EXPRESSION TAG SEQADV 5CF7 GLY A 917 UNP P96202 EXPRESSION TAG SEQADV 5CF7 SER A 918 UNP P96202 EXPRESSION TAG SEQADV 5CF7 HIS A 919 UNP P96202 EXPRESSION TAG SEQADV 5CF7 MET A 920 UNP P96202 EXPRESSION TAG SEQADV 5CF7 PHE A 959 UNP P96202 HIS 959 ENGINEERED MUTATION SEQADV 5CF7 GLY A 1223 UNP P96202 EXPRESSION TAG SEQADV 5CF7 SER A 1224 UNP P96202 EXPRESSION TAG SEQRES 1 A 325 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 325 LEU VAL PRO ARG GLY SER HIS MET ALA TYR HIS ARG PRO SEQRES 3 A 325 ASP THR HIS PRO LEU LEU GLY VAL GLY VAL THR ASP PRO SEQRES 4 A 325 THR ASN GLY THR ARG VAL TRP GLU SER GLU LEU ASP PRO SEQRES 5 A 325 ASP LEU LEU TRP LEU ALA ASP PHE VAL ILE ASP ASP LEU SEQRES 6 A 325 VAL VAL LEU PRO GLY ALA ALA TYR ALA GLU ILE ALA LEU SEQRES 7 A 325 ALA ALA ALA THR ASP THR PHE ALA VAL GLU GLN ASP GLN SEQRES 8 A 325 PRO TRP MET ILE SER GLU LEU ASP LEU ARG GLN MET LEU SEQRES 9 A 325 HIS VAL THR PRO GLY THR VAL LEU VAL THR THR LEU THR SEQRES 10 A 325 GLY ASP GLU GLN ARG CYS GLN VAL GLU ILE ARG THR ARG SEQRES 11 A 325 SER GLY SER SER GLY TRP THR THR HIS ALA THR ALA THR SEQRES 12 A 325 VAL ALA ARG ALA GLU PRO LEU ALA PRO LEU ASP HIS GLU SEQRES 13 A 325 GLY GLN ARG ARG GLU VAL THR THR ALA ASP LEU GLU ASP SEQRES 14 A 325 GLN LEU ASP PRO ASP ASP LEU TYR GLN ARG LEU ARG GLY SEQRES 15 A 325 ALA GLY GLN GLN HIS GLY PRO ALA PHE GLN GLY ILE VAL SEQRES 16 A 325 GLY LEU ALA VAL THR GLN ALA GLY VAL ALA ARG ALA GLN SEQRES 17 A 325 VAL ARG LEU PRO ALA SER ALA ARG THR GLY SER ARG GLU SEQRES 18 A 325 PHE MET LEU HIS PRO VAL MET MET ASP ILE ALA LEU GLN SEQRES 19 A 325 THR LEU GLY ALA THR ARG THR ALA THR ASP LEU ALA GLY SEQRES 20 A 325 GLY GLN ASP ALA ARG GLN GLY PRO SER SER ASN SER ALA SEQRES 21 A 325 LEU VAL VAL PRO VAL ARG PHE ALA GLY VAL HIS VAL TYR SEQRES 22 A 325 GLY ASP ILE THR ARG GLY VAL ARG ALA VAL GLY SER LEU SEQRES 23 A 325 ALA ALA ALA GLY ASP ARG LEU VAL GLY GLU VAL VAL LEU SEQRES 24 A 325 THR ASP ALA ASN GLY GLN PRO LEU LEU VAL VAL ASP GLU SEQRES 25 A 325 VAL GLU MET ALA VAL LEU GLY SER GLY SER GLY GLY SER HET 8Z2 A1301 230 HETNAM 8Z2 ~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5- HETNAM 2 8Z2 (6-AMINOPURIN-9-YL)-4-OXIDANYL-3-PHOSPHONOOXY-OXOLAN- HETNAM 3 8Z2 2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-OXIDANYL- HETNAM 4 8Z2 PHOSPHORYL]OXY-3,3-DIMETHYL-2-OXIDANYL- HETNAM 5 8Z2 BUTANOYL]AMINO]PROPANOYLAMINO]ETHYL] (~{E})-DODEC-2- HETNAM 6 8Z2 ENETHIOATE FORMUL 2 8Z2 C33 H56 N7 O17 P3 S FORMUL 3 HOH *293(H2 O) HELIX 1 AA1 TRP A 955 ALA A 957 5 3 HELIX 2 AA2 PRO A 968 PHE A 984 1 17 HELIX 3 AA3 ASP A 1071 ALA A 1082 1 12 HELIX 4 AA4 PRO A 1088 GLN A 1091 5 4 HELIX 5 AA5 PRO A 1111 ARG A 1115 5 5 HELIX 6 AA6 HIS A 1124 THR A 1134 1 11 HELIX 7 AA7 LEU A 1135 ALA A 1137 5 3 HELIX 8 AA8 THR A 1138 GLY A 1146 1 9 HELIX 9 AA9 ASP A 1174 GLY A 1178 5 5 SHEET 1 AA113 VAL A 933 THR A 936 0 SHEET 2 AA113 ARG A 943 LEU A 949 -1 O VAL A 944 N VAL A 935 SHEET 3 AA113 THR A1009 GLY A1017 -1 O THR A1009 N LEU A 949 SHEET 4 AA113 ARG A1021 ARG A1029 -1 O ARG A1027 N VAL A1012 SHEET 5 AA113 TRP A1035 ARG A1045 -1 O HIS A1038 N ILE A1026 SHEET 6 AA113 TRP A 992 LEU A 999 -1 N ASP A 998 O THR A1040 SHEET 7 AA113 VAL A1161 VAL A1171 -1 O VAL A1164 N LEU A 999 SHEET 8 AA113 PRO A1205 VAL A1216 -1 O GLU A1213 N VAL A1164 SHEET 9 AA113 ARG A1191 THR A1199 -1 N LEU A1198 O LEU A1206 SHEET 10 AA113 ARG A1180 ALA A1188 -1 N ALA A1188 O ARG A1191 SHEET 11 AA113 ALA A1104 VAL A1108 -1 N ALA A1106 O ALA A1181 SHEET 12 AA113 ILE A1093 THR A1099 -1 N ALA A1097 O ARG A1105 SHEET 13 AA113 GLU A1067 LEU A1070 -1 N LEU A1070 O LEU A1096 SHEET 1 AA2 3 LEU A 964 VAL A 965 0 SHEET 2 AA2 3 PHE A 959 ILE A 961 -1 N ILE A 961 O LEU A 964 SHEET 3 AA2 3 GLN A1084 HIS A1086 -1 O GLN A1085 N VAL A 960 CISPEP 1 GLY A 1031 SER A 1032 0 -5.41 SITE 1 AC1 24 PHE A 959 LEU A 967 GLY A 969 LEU A 999 SITE 2 AC1 24 ARG A1000 GLN A1001 MET A1002 LEU A1052 SITE 3 AC1 24 GLN A1084 VAL A1094 GLN A1107 VAL A1108 SITE 4 AC1 24 ARG A1109 ASP A1129 GLN A1133 VAL A1161 SITE 5 AC1 24 PRO A1163 VAL A1179 ALA A1201 HOH A1401 SITE 6 AC1 24 HOH A1413 HOH A1510 HOH A1526 HOH A1566 CRYST1 117.377 70.810 42.571 90.00 104.87 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008520 0.000000 0.002263 0.00000 SCALE2 0.000000 0.014122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024304 0.00000