HEADER HYDROLASE 08-JUL-15 5CFI TITLE STRUCTURAL AND FUNCTIONAL ATTRIBUTES OF MALARIA PARASITE AP4A TITLE 2 HYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIS(5'-NUCLEOSYL)-TETRAPHOSPHATASE (DIADENOSINE COMPND 3 TETRAPHOSPHATASE), PUTATIVE; COMPND 4 CHAIN: A, B, C, D; COMPND 5 SYNONYM: AP4A HYDROLASE; COMPND 6 EC: 3.6.1.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE 3D7); SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: ISOLATE 3D7; SOURCE 5 GENE: PFE1035C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS AP4A, NUDIX HYDROLYSE, PLASMODIUM, PURINERGIC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SHARMA,M.YOGAVEL,A.SHARMA REVDAT 4 20-MAR-24 5CFI 1 REMARK REVDAT 3 16-AUG-17 5CFI 1 REMARK REVDAT 2 17-FEB-16 5CFI 1 JRNL REVDAT 1 10-FEB-16 5CFI 0 JRNL AUTH A.SHARMA,M.YOGAVEL,A.SHARMA JRNL TITL STRUCTURAL AND FUNCTIONAL ATTRIBUTES OF MALARIA PARASITE JRNL TITL 2 DIADENOSINE TETRAPHOSPHATE HYDROLASE JRNL REF SCI REP V. 6 19981 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26829485 JRNL DOI 10.1038/SREP19981 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 19115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.0952 - 6.2365 1.00 1294 145 0.2241 0.2317 REMARK 3 2 6.2365 - 4.9626 0.98 1237 137 0.2143 0.2521 REMARK 3 3 4.9626 - 4.3390 0.94 1183 132 0.1666 0.2429 REMARK 3 4 4.3390 - 3.9439 0.97 1224 135 0.1707 0.2284 REMARK 3 5 3.9439 - 3.6622 0.98 1226 137 0.2016 0.2923 REMARK 3 6 3.6622 - 3.4468 0.99 1245 138 0.2011 0.2866 REMARK 3 7 3.4468 - 3.2746 0.98 1229 136 0.2019 0.2527 REMARK 3 8 3.2746 - 3.1323 0.99 1233 137 0.2268 0.3490 REMARK 3 9 3.1323 - 3.0119 0.99 1206 135 0.2309 0.3135 REMARK 3 10 3.0119 - 2.9082 0.99 1222 136 0.2584 0.3218 REMARK 3 11 2.9082 - 2.8174 0.99 1224 136 0.2414 0.3661 REMARK 3 12 2.8174 - 2.7369 0.99 1233 137 0.2435 0.3378 REMARK 3 13 2.7369 - 2.6649 0.99 1203 134 0.2621 0.3202 REMARK 3 14 2.6649 - 2.6000 0.98 1243 138 0.2896 0.3925 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4317 REMARK 3 ANGLE : 1.156 5847 REMARK 3 CHIRALITY : 0.045 627 REMARK 3 PLANARITY : 0.005 762 REMARK 3 DIHEDRAL : 13.665 1516 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CFI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211548. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19340 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.61800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, POTASSIUM NITRATE, SODIUM REMARK 280 BROMIDE, PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.65500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.12250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.65500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.12250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ILE A 3 REMARK 465 GLN A 151 REMARK 465 LEU A 152 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ILE B 3 REMARK 465 ASN B 4 REMARK 465 ASN B 54 REMARK 465 GLU B 55 REMARK 465 GLU B 150 REMARK 465 GLN B 151 REMARK 465 LEU B 152 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 ILE C 3 REMARK 465 ASN C 4 REMARK 465 ILE C 5 REMARK 465 PRO C 21 REMARK 465 VAL C 22 REMARK 465 THR C 23 REMARK 465 THR C 24 REMARK 465 GLY C 25 REMARK 465 ASP C 26 REMARK 465 ILE C 27 REMARK 465 ASN C 28 REMARK 465 TYR C 87 REMARK 465 ASN C 88 REMARK 465 VAL C 89 REMARK 465 LYS C 90 REMARK 465 ASP C 91 REMARK 465 LYS C 92 REMARK 465 GLU C 150 REMARK 465 GLN C 151 REMARK 465 LEU C 152 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 ILE D 3 REMARK 465 ASN D 4 REMARK 465 LYS D 18 REMARK 465 TYR D 19 REMARK 465 ASN D 20 REMARK 465 PRO D 21 REMARK 465 VAL D 22 REMARK 465 THR D 23 REMARK 465 THR D 24 REMARK 465 GLY D 25 REMARK 465 ASP D 26 REMARK 465 ILE D 27 REMARK 465 ASN D 28 REMARK 465 LYS D 29 REMARK 465 PHE D 30 REMARK 465 LYS D 90 REMARK 465 ASP D 91 REMARK 465 LYS D 92 REMARK 465 LYS D 149 REMARK 465 GLU D 150 REMARK 465 GLN D 151 REMARK 465 LEU D 152 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 5 CG1 CG2 CD1 REMARK 470 ILE A 6 CG1 CG2 CD1 REMARK 470 LYS A 7 CE NZ REMARK 470 ILE A 27 CG1 CG2 CD1 REMARK 470 GLU A 52 OE1 OE2 REMARK 470 ASN A 88 CG OD1 ND2 REMARK 470 VAL A 89 CG1 CG2 REMARK 470 LYS A 90 CB CG CD CE NZ REMARK 470 ASP A 91 CB CG OD1 OD2 REMARK 470 LYS A 92 CE NZ REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 ILE B 5 CD1 REMARK 470 ILE B 6 CD1 REMARK 470 LYS B 7 CE NZ REMARK 470 THR B 24 OG1 CG2 REMARK 470 ASP B 26 CB CG OD1 OD2 REMARK 470 ILE B 27 CG2 CD1 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 ASN B 53 CG OD1 ND2 REMARK 470 GLU B 67 CG CD OE1 OE2 REMARK 470 LYS B 90 CD CE NZ REMARK 470 LYS B 92 CG CD CE NZ REMARK 470 GLU B 134 CG CD OE1 OE2 REMARK 470 GLU B 145 CG CD OE1 OE2 REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 ILE C 6 CG1 CG2 CD1 REMARK 470 LEU C 16 CB CG CD1 CD2 REMARK 470 LYS C 17 CD CE NZ REMARK 470 LYS C 18 CB CG CD CE NZ REMARK 470 TYR C 19 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR C 19 OH REMARK 470 ASN C 20 CB CG OD1 ND2 REMARK 470 LYS C 86 CG CD CE NZ REMARK 470 PRO C 93 CB CG CD REMARK 470 LYS C 94 CB CG CD CE NZ REMARK 470 GLU C 107 CB CG CD OE1 OE2 REMARK 470 ILE C 111 CG1 CG2 CD1 REMARK 470 LYS C 120 CG CD CE NZ REMARK 470 GLU C 134 CD OE1 OE2 REMARK 470 ASP C 138 CG OD1 OD2 REMARK 470 LYS C 141 CD CE NZ REMARK 470 ILE D 5 CG1 CG2 CD1 REMARK 470 ILE D 6 CG1 CG2 CD1 REMARK 470 LYS D 7 CE NZ REMARK 470 ILE D 11 CG1 CG2 CD1 REMARK 470 LEU D 12 CG CD1 CD2 REMARK 470 ARG D 15 CB CG CD NE CZ NH1 NH2 REMARK 470 LEU D 16 CB CG CD1 CD2 REMARK 470 LYS D 17 CG CD CE NZ REMARK 470 LYS D 36 CG CD CE NZ REMARK 470 SER D 38 CB OG REMARK 470 TYR D 39 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR D 39 OH REMARK 470 ALA D 40 CB REMARK 470 ASP D 41 CG OD1 OD2 REMARK 470 LYS D 42 CB CG CD CE NZ REMARK 470 HIS D 43 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS D 48 CD CE NZ REMARK 470 LYS D 77 CG CD CE NZ REMARK 470 LEU D 79 CD1 CD2 REMARK 470 LYS D 83 CG CD CE NZ REMARK 470 LEU D 85 CD1 CD2 REMARK 470 LYS D 86 CG CD CE NZ REMARK 470 VAL D 89 CB CG1 CG2 REMARK 470 LYS D 94 CB CG CD CE NZ REMARK 470 LEU D 100 CG CD1 CD2 REMARK 470 MET D 102 CE REMARK 470 LEU D 103 CG CD1 CD2 REMARK 470 LEU D 104 CD1 CD2 REMARK 470 ASN D 106 CB CG OD1 ND2 REMARK 470 GLU D 107 CB CG CD OE1 OE2 REMARK 470 VAL D 110 CG1 CG2 REMARK 470 ILE D 111 CD1 REMARK 470 LEU D 112 CD1 CD2 REMARK 470 GLU D 115 CG CD OE1 OE2 REMARK 470 THR D 117 OG1 CG2 REMARK 470 ASP D 118 CB CG OD1 OD2 REMARK 470 LYS D 120 CB CG CD CE NZ REMARK 470 ILE D 122 CB CG1 CG2 CD1 REMARK 470 SER D 124 CB OG REMARK 470 GLU D 126 CD OE1 OE2 REMARK 470 SER D 127 CB OG REMARK 470 ASP D 128 CB CG OD1 OD2 REMARK 470 ASN D 131 CB CG OD1 ND2 REMARK 470 LEU D 132 CB CG CD1 CD2 REMARK 470 GLU D 134 CB CG CD OE1 OE2 REMARK 470 LEU D 136 CG CD1 CD2 REMARK 470 ALA D 137 CB REMARK 470 ASP D 138 CB CG OD1 OD2 REMARK 470 LEU D 139 CB CG CD1 CD2 REMARK 470 LEU D 140 CG CD1 CD2 REMARK 470 LYS D 141 CG CD CE NZ REMARK 470 GLU D 144 CG CD OE1 OE2 REMARK 470 GLU D 145 CG CD OE1 OE2 REMARK 470 LEU D 147 CD1 REMARK 470 ASN D 148 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR D 65 OG1 THR D 69 1.94 REMARK 500 O THR C 65 OG1 THR C 69 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 40 -125.68 50.58 REMARK 500 ASN A 53 -126.61 53.10 REMARK 500 THR B 24 -65.90 -138.62 REMARK 500 ALA B 40 -119.50 64.13 REMARK 500 ALA C 40 -123.85 53.23 REMARK 500 ASN C 53 -125.83 51.78 REMARK 500 ASP C 74 0.00 -68.53 REMARK 500 TYR D 39 -159.46 -117.56 REMARK 500 ALA D 40 -138.81 54.21 REMARK 500 LYS D 42 38.86 78.17 REMARK 500 ASN D 53 -128.63 55.77 REMARK 500 ASP D 114 48.29 -78.10 REMARK 500 PRO D 133 164.70 -47.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U53 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN AP4A HYDROLASE REMARK 900 RELATED ID: 5CFJ RELATED DB: PDB DBREF 5CFI A 1 152 UNP C0H4F3 C0H4F3_PLAF7 1 152 DBREF 5CFI B 1 152 UNP C0H4F3 C0H4F3_PLAF7 1 152 DBREF 5CFI C 1 152 UNP C0H4F3 C0H4F3_PLAF7 1 152 DBREF 5CFI D 1 152 UNP C0H4F3 C0H4F3_PLAF7 1 152 SEQRES 1 A 152 MET LYS ILE ASN ILE ILE LYS ALA PHE GLY ILE LEU LEU SEQRES 2 A 152 CYS ARG LEU LYS LYS TYR ASN PRO VAL THR THR GLY ASP SEQRES 3 A 152 ILE ASN LYS PHE GLU PHE LEU PHE LEU LYS ALA SER TYR SEQRES 4 A 152 ALA ASP LYS HIS TRP THR PRO PRO LYS GLY LEU HIS GLU SEQRES 5 A 152 ASN ASN GLU SER GLY LEU GLU THR ALA VAL ARG GLU THR SEQRES 6 A 152 LEU GLU GLU THR GLY ILE ASN LYS ASP LYS TYR LYS LEU SEQRES 7 A 152 LEU ASN TYR GLN LYS THR LEU LYS TYR ASN VAL LYS ASP SEQRES 8 A 152 LYS PRO LYS GLU THR THR TYR TYR LEU ALA MET LEU LEU SEQRES 9 A 152 ASN ASN GLU GLU ASN VAL ILE LEU SER ASP GLU HIS THR SEQRES 10 A 152 ASP TYR LYS TRP ILE GLY SER HIS GLU SER ASP THR TYR SEQRES 11 A 152 ASN LEU PRO GLU SER LEU ALA ASP LEU LEU LYS GLU ALA SEQRES 12 A 152 GLU GLU PHE LEU ASN LYS GLU GLN LEU SEQRES 1 B 152 MET LYS ILE ASN ILE ILE LYS ALA PHE GLY ILE LEU LEU SEQRES 2 B 152 CYS ARG LEU LYS LYS TYR ASN PRO VAL THR THR GLY ASP SEQRES 3 B 152 ILE ASN LYS PHE GLU PHE LEU PHE LEU LYS ALA SER TYR SEQRES 4 B 152 ALA ASP LYS HIS TRP THR PRO PRO LYS GLY LEU HIS GLU SEQRES 5 B 152 ASN ASN GLU SER GLY LEU GLU THR ALA VAL ARG GLU THR SEQRES 6 B 152 LEU GLU GLU THR GLY ILE ASN LYS ASP LYS TYR LYS LEU SEQRES 7 B 152 LEU ASN TYR GLN LYS THR LEU LYS TYR ASN VAL LYS ASP SEQRES 8 B 152 LYS PRO LYS GLU THR THR TYR TYR LEU ALA MET LEU LEU SEQRES 9 B 152 ASN ASN GLU GLU ASN VAL ILE LEU SER ASP GLU HIS THR SEQRES 10 B 152 ASP TYR LYS TRP ILE GLY SER HIS GLU SER ASP THR TYR SEQRES 11 B 152 ASN LEU PRO GLU SER LEU ALA ASP LEU LEU LYS GLU ALA SEQRES 12 B 152 GLU GLU PHE LEU ASN LYS GLU GLN LEU SEQRES 1 C 152 MET LYS ILE ASN ILE ILE LYS ALA PHE GLY ILE LEU LEU SEQRES 2 C 152 CYS ARG LEU LYS LYS TYR ASN PRO VAL THR THR GLY ASP SEQRES 3 C 152 ILE ASN LYS PHE GLU PHE LEU PHE LEU LYS ALA SER TYR SEQRES 4 C 152 ALA ASP LYS HIS TRP THR PRO PRO LYS GLY LEU HIS GLU SEQRES 5 C 152 ASN ASN GLU SER GLY LEU GLU THR ALA VAL ARG GLU THR SEQRES 6 C 152 LEU GLU GLU THR GLY ILE ASN LYS ASP LYS TYR LYS LEU SEQRES 7 C 152 LEU ASN TYR GLN LYS THR LEU LYS TYR ASN VAL LYS ASP SEQRES 8 C 152 LYS PRO LYS GLU THR THR TYR TYR LEU ALA MET LEU LEU SEQRES 9 C 152 ASN ASN GLU GLU ASN VAL ILE LEU SER ASP GLU HIS THR SEQRES 10 C 152 ASP TYR LYS TRP ILE GLY SER HIS GLU SER ASP THR TYR SEQRES 11 C 152 ASN LEU PRO GLU SER LEU ALA ASP LEU LEU LYS GLU ALA SEQRES 12 C 152 GLU GLU PHE LEU ASN LYS GLU GLN LEU SEQRES 1 D 152 MET LYS ILE ASN ILE ILE LYS ALA PHE GLY ILE LEU LEU SEQRES 2 D 152 CYS ARG LEU LYS LYS TYR ASN PRO VAL THR THR GLY ASP SEQRES 3 D 152 ILE ASN LYS PHE GLU PHE LEU PHE LEU LYS ALA SER TYR SEQRES 4 D 152 ALA ASP LYS HIS TRP THR PRO PRO LYS GLY LEU HIS GLU SEQRES 5 D 152 ASN ASN GLU SER GLY LEU GLU THR ALA VAL ARG GLU THR SEQRES 6 D 152 LEU GLU GLU THR GLY ILE ASN LYS ASP LYS TYR LYS LEU SEQRES 7 D 152 LEU ASN TYR GLN LYS THR LEU LYS TYR ASN VAL LYS ASP SEQRES 8 D 152 LYS PRO LYS GLU THR THR TYR TYR LEU ALA MET LEU LEU SEQRES 9 D 152 ASN ASN GLU GLU ASN VAL ILE LEU SER ASP GLU HIS THR SEQRES 10 D 152 ASP TYR LYS TRP ILE GLY SER HIS GLU SER ASP THR TYR SEQRES 11 D 152 ASN LEU PRO GLU SER LEU ALA ASP LEU LEU LYS GLU ALA SEQRES 12 D 152 GLU GLU PHE LEU ASN LYS GLU GLN LEU FORMUL 5 HOH *63(H2 O) HELIX 1 AA1 SER A 56 GLY A 70 1 15 HELIX 2 AA2 ASN A 72 ASP A 74 5 3 HELIX 3 AA3 GLY A 123 SER A 127 5 5 HELIX 4 AA4 PRO A 133 ASN A 148 1 16 HELIX 5 AA5 SER B 56 GLY B 70 1 15 HELIX 6 AA6 ASN B 72 ASP B 74 5 3 HELIX 7 AA7 GLY B 123 SER B 127 5 5 HELIX 8 AA8 PRO B 133 LYS B 149 1 17 HELIX 9 AA9 SER C 56 GLY C 70 1 15 HELIX 10 AB1 ASN C 72 ASP C 74 5 3 HELIX 11 AB2 GLY C 123 ASN C 131 5 9 HELIX 12 AB3 PRO C 133 ASN C 148 1 16 HELIX 13 AB4 SER D 56 THR D 69 1 14 HELIX 14 AB5 ASN D 72 ASP D 74 5 3 HELIX 15 AB6 SER D 124 ASP D 128 5 5 HELIX 16 AB7 PRO D 133 LEU D 147 1 15 SHEET 1 AA1 5 TRP A 44 THR A 45 0 SHEET 2 AA1 5 PHE A 30 ALA A 37 -1 N LEU A 35 O THR A 45 SHEET 3 AA1 5 ILE A 6 LEU A 16 -1 N LEU A 13 O LEU A 33 SHEET 4 AA1 5 LYS A 92 LEU A 103 1 O ALA A 101 N CYS A 14 SHEET 5 AA1 5 TYR A 76 VAL A 89 -1 N LYS A 83 O TYR A 98 SHEET 1 AA2 4 LYS A 48 LEU A 50 0 SHEET 2 AA2 4 ILE A 6 LEU A 16 -1 N PHE A 9 O GLY A 49 SHEET 3 AA2 4 PHE A 30 ALA A 37 -1 O LEU A 33 N LEU A 13 SHEET 4 AA2 4 HIS A 116 ILE A 122 -1 O ILE A 122 N PHE A 32 SHEET 1 AA3 5 TRP B 44 THR B 45 0 SHEET 2 AA3 5 PHE B 30 ALA B 37 -1 N LEU B 35 O THR B 45 SHEET 3 AA3 5 ILE B 6 LEU B 16 -1 N LEU B 13 O LEU B 33 SHEET 4 AA3 5 LYS B 92 LEU B 103 1 O ALA B 101 N CYS B 14 SHEET 5 AA3 5 TYR B 76 VAL B 89 -1 N LYS B 77 O MET B 102 SHEET 1 AA4 4 LYS B 48 LEU B 50 0 SHEET 2 AA4 4 ILE B 6 LEU B 16 -1 N PHE B 9 O GLY B 49 SHEET 3 AA4 4 PHE B 30 ALA B 37 -1 O LEU B 33 N LEU B 13 SHEET 4 AA4 4 HIS B 116 ILE B 122 -1 O ASP B 118 N LYS B 36 SHEET 1 AA5 5 TRP C 44 THR C 45 0 SHEET 2 AA5 5 PHE C 30 ALA C 37 -1 N LEU C 35 O THR C 45 SHEET 3 AA5 5 LYS C 7 LEU C 16 -1 N ARG C 15 O GLU C 31 SHEET 4 AA5 5 GLU C 95 LEU C 103 1 O ALA C 101 N CYS C 14 SHEET 5 AA5 5 TYR C 76 LEU C 85 -1 N LYS C 83 O TYR C 98 SHEET 1 AA6 4 GLY C 49 LEU C 50 0 SHEET 2 AA6 4 LYS C 7 LEU C 16 -1 N PHE C 9 O GLY C 49 SHEET 3 AA6 4 PHE C 30 ALA C 37 -1 O GLU C 31 N ARG C 15 SHEET 4 AA6 4 HIS C 116 ILE C 122 -1 O LYS C 120 N PHE C 34 SHEET 1 AA7 4 GLY D 49 LEU D 50 0 SHEET 2 AA7 4 ILE D 6 CYS D 14 -1 N PHE D 9 O GLY D 49 SHEET 3 AA7 4 LYS D 94 LEU D 103 1 O LEU D 103 N CYS D 14 SHEET 4 AA7 4 TYR D 76 TYR D 87 -1 N TYR D 81 O LEU D 100 SHEET 1 AA8 3 TRP D 44 THR D 45 0 SHEET 2 AA8 3 PHE D 32 ALA D 37 -1 N LEU D 35 O THR D 45 SHEET 3 AA8 3 HIS D 116 ILE D 122 -1 O ASP D 118 N LYS D 36 CRYST1 163.310 64.245 61.405 90.00 100.08 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006123 0.000000 0.001089 0.00000 SCALE2 0.000000 0.015565 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016541 0.00000