HEADER IMMUNE SYSTEM 08-JUL-15 5CFP TITLE CRYSTAL STRUCTURE OF ANEMONE STING (NEMATOSTELLA VECTENSIS) TITLE 2 'HUMANIZED' F276K IN COMPLEX WITH 3', 3' C-DI-GMP, C[G(3', 5')PG(3', TITLE 3 5')P]' COMPND MOL_ID: 1; COMPND 2 MOLECULE: STIMULATOR OF INTERFERON GENES; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 178-377; COMPND 5 SYNONYM: PREDICTED PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEMATOSTELLA VECTENSIS; SOURCE 3 ORGANISM_COMMON: STARLET SEA ANEMONE; SOURCE 4 ORGANISM_TAXID: 45351; SOURCE 5 GENE: V1G246111; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STING, CYCLIC-DINUCLEOTIDE BINDING DOMAIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.J.KRANZUSCH,S.C.WILSON,A.S.Y.LEE,J.M.BERGER,J.A.DOUDNA,R.E.VANCE REVDAT 6 06-MAR-24 5CFP 1 HETSYN REVDAT 5 20-NOV-19 5CFP 1 REMARK REVDAT 4 27-SEP-17 5CFP 1 JRNL REMARK REVDAT 3 30-SEP-15 5CFP 1 JRNL REVDAT 2 09-SEP-15 5CFP 1 JRNL REVDAT 1 26-AUG-15 5CFP 0 JRNL AUTH P.J.KRANZUSCH,S.C.WILSON,A.S.LEE,J.M.BERGER,J.A.DOUDNA, JRNL AUTH 2 R.E.VANCE JRNL TITL ANCIENT ORIGIN OF CGAS-STING REVEALS MECHANISM OF UNIVERSAL JRNL TITL 2 2',3' CGAMP SIGNALING. JRNL REF MOL.CELL V. 59 891 2015 JRNL REFN ISSN 1097-2765 JRNL PMID 26300263 JRNL DOI 10.1016/J.MOLCEL.2015.07.022 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 45375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9387 - 5.0920 1.00 2894 136 0.1416 0.1792 REMARK 3 2 5.0920 - 4.0428 1.00 2893 136 0.1180 0.1484 REMARK 3 3 4.0428 - 3.5321 1.00 2909 146 0.1449 0.1907 REMARK 3 4 3.5321 - 3.2093 1.00 2926 135 0.1671 0.1860 REMARK 3 5 3.2093 - 2.9793 1.00 2892 142 0.1924 0.2432 REMARK 3 6 2.9793 - 2.8037 1.00 2877 142 0.2016 0.2049 REMARK 3 7 2.8037 - 2.6633 1.00 2924 140 0.2002 0.2198 REMARK 3 8 2.6633 - 2.5474 1.00 2923 125 0.2085 0.2400 REMARK 3 9 2.5474 - 2.4494 1.00 2888 136 0.2107 0.2652 REMARK 3 10 2.4494 - 2.3649 1.00 2920 134 0.2188 0.2688 REMARK 3 11 2.3649 - 2.2909 1.00 2924 142 0.2297 0.2599 REMARK 3 12 2.2909 - 2.2254 1.00 2892 134 0.2511 0.2393 REMARK 3 13 2.2254 - 2.1669 1.00 2890 136 0.2685 0.3054 REMARK 3 14 2.1669 - 2.1140 1.00 2929 138 0.2750 0.3233 REMARK 3 15 2.1140 - 2.0660 0.91 2653 119 0.3045 0.3506 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3160 REMARK 3 ANGLE : 1.298 4280 REMARK 3 CHIRALITY : 0.057 446 REMARK 3 PLANARITY : 0.008 534 REMARK 3 DIHEDRAL : 15.500 1184 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2344 -24.7853 20.5495 REMARK 3 T TENSOR REMARK 3 T11: 0.4071 T22: 0.3568 REMARK 3 T33: 0.4241 T12: -0.0974 REMARK 3 T13: 0.0063 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.7507 L22: 0.0627 REMARK 3 L33: -0.0254 L12: 0.2528 REMARK 3 L13: -0.1217 L23: -0.0672 REMARK 3 S TENSOR REMARK 3 S11: -0.1065 S12: -0.0923 S13: -0.4637 REMARK 3 S21: -0.5393 S22: 0.0868 S23: -0.1575 REMARK 3 S31: 0.4317 S32: -0.2216 S33: 0.0008 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9408 -10.4937 9.0738 REMARK 3 T TENSOR REMARK 3 T11: 0.4662 T22: 0.3580 REMARK 3 T33: 0.4099 T12: -0.1692 REMARK 3 T13: -0.1043 T23: 0.1004 REMARK 3 L TENSOR REMARK 3 L11: 0.3580 L22: 0.5869 REMARK 3 L33: 0.3065 L12: -0.3606 REMARK 3 L13: -0.3289 L23: 0.0830 REMARK 3 S TENSOR REMARK 3 S11: 0.2646 S12: 0.0249 S13: -0.0010 REMARK 3 S21: -0.4328 S22: 0.1382 S23: 0.4040 REMARK 3 S31: 0.1617 S32: -0.2371 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 221 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3961 -4.3040 12.8445 REMARK 3 T TENSOR REMARK 3 T11: 0.4399 T22: 0.3272 REMARK 3 T33: 0.3863 T12: -0.0911 REMARK 3 T13: -0.0468 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.4887 L22: 1.1746 REMARK 3 L33: 0.5783 L12: 0.0575 REMARK 3 L13: -0.3189 L23: -1.2334 REMARK 3 S TENSOR REMARK 3 S11: -0.1199 S12: -0.2417 S13: 0.2515 REMARK 3 S21: 0.0225 S22: 0.1719 S23: -0.0680 REMARK 3 S31: -0.1136 S32: -0.0412 S33: 0.0289 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 250 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6414 -0.9939 15.9065 REMARK 3 T TENSOR REMARK 3 T11: 0.5454 T22: 0.3774 REMARK 3 T33: 0.4386 T12: -0.1301 REMARK 3 T13: -0.0992 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 0.8297 L22: 1.7782 REMARK 3 L33: 2.5023 L12: -1.2560 REMARK 3 L13: -0.6931 L23: 0.6480 REMARK 3 S TENSOR REMARK 3 S11: 0.1075 S12: -0.3006 S13: 0.3892 REMARK 3 S21: 0.2078 S22: -0.0002 S23: 0.0022 REMARK 3 S31: -0.1405 S32: 0.0491 S33: 0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 272 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.6197 -11.3594 19.7383 REMARK 3 T TENSOR REMARK 3 T11: 0.4999 T22: 0.5162 REMARK 3 T33: 0.6231 T12: -0.2285 REMARK 3 T13: -0.0012 T23: 0.0947 REMARK 3 L TENSOR REMARK 3 L11: 0.2026 L22: 0.1255 REMARK 3 L33: 0.0419 L12: -0.1487 REMARK 3 L13: -0.1143 L23: 0.0127 REMARK 3 S TENSOR REMARK 3 S11: 0.3252 S12: -0.8480 S13: -0.1150 REMARK 3 S21: 0.1354 S22: -0.3330 S23: 0.6329 REMARK 3 S31: -0.0541 S32: 0.3575 S33: -0.0010 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 283 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3042 0.3424 9.2730 REMARK 3 T TENSOR REMARK 3 T11: 0.4873 T22: 0.3771 REMARK 3 T33: 0.4959 T12: -0.1732 REMARK 3 T13: -0.0809 T23: 0.0708 REMARK 3 L TENSOR REMARK 3 L11: 0.4257 L22: 0.3041 REMARK 3 L33: 0.5247 L12: -0.3405 REMARK 3 L13: 0.3358 L23: -0.3920 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: 0.0006 S13: 0.3285 REMARK 3 S21: 0.2813 S22: -0.1090 S23: -0.0659 REMARK 3 S31: -0.3547 S32: 0.3409 S33: -0.0052 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 303 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6514 -21.5238 24.5826 REMARK 3 T TENSOR REMARK 3 T11: 0.2883 T22: 0.4382 REMARK 3 T33: 0.3849 T12: -0.0019 REMARK 3 T13: 0.0235 T23: -0.0518 REMARK 3 L TENSOR REMARK 3 L11: 1.7475 L22: 2.3814 REMARK 3 L33: 0.8242 L12: 1.1405 REMARK 3 L13: 1.2434 L23: 0.2703 REMARK 3 S TENSOR REMARK 3 S11: -0.0636 S12: -0.0116 S13: -0.1588 REMARK 3 S21: -0.2203 S22: 0.1761 S23: -0.3780 REMARK 3 S31: 0.1370 S32: 0.4411 S33: 0.0005 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 342 THROUGH 359 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8370 -14.0652 10.6299 REMARK 3 T TENSOR REMARK 3 T11: 0.5438 T22: 0.4471 REMARK 3 T33: 0.3468 T12: -0.1123 REMARK 3 T13: 0.0213 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.2289 L22: 1.8211 REMARK 3 L33: 0.9681 L12: -0.9006 REMARK 3 L13: -0.6946 L23: -0.4264 REMARK 3 S TENSOR REMARK 3 S11: 0.1159 S12: 0.2930 S13: -0.2667 REMARK 3 S21: -0.5148 S22: 0.0907 S23: -0.4265 REMARK 3 S31: 0.4612 S32: 0.4699 S33: 0.0011 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 360 THROUGH 372 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3026 -6.1882 5.7219 REMARK 3 T TENSOR REMARK 3 T11: 0.5222 T22: 0.4604 REMARK 3 T33: 0.4323 T12: -0.1336 REMARK 3 T13: -0.0201 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 0.3988 L22: 0.6436 REMARK 3 L33: 0.1488 L12: -0.1562 REMARK 3 L13: 0.0311 L23: -0.2908 REMARK 3 S TENSOR REMARK 3 S11: -0.0821 S12: 0.3355 S13: 0.5399 REMARK 3 S21: -0.7308 S22: -0.1427 S23: -0.1493 REMARK 3 S31: 0.7992 S32: 0.3618 S33: 0.0021 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 192 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1256 -25.3361 30.0021 REMARK 3 T TENSOR REMARK 3 T11: 0.3227 T22: 0.4984 REMARK 3 T33: 0.4531 T12: -0.0107 REMARK 3 T13: 0.0039 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 0.6338 L22: 0.5586 REMARK 3 L33: 0.0678 L12: 0.5994 REMARK 3 L13: -0.1861 L23: -0.1203 REMARK 3 S TENSOR REMARK 3 S11: -0.0810 S12: -0.4892 S13: -0.3205 REMARK 3 S21: -0.1293 S22: -0.0224 S23: -0.2820 REMARK 3 S31: 0.0221 S32: 0.2311 S33: -0.0002 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 205 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6379 -11.4789 41.4902 REMARK 3 T TENSOR REMARK 3 T11: 0.2423 T22: 0.5924 REMARK 3 T33: 0.3876 T12: -0.0271 REMARK 3 T13: 0.0311 T23: -0.1271 REMARK 3 L TENSOR REMARK 3 L11: 0.5396 L22: 0.4654 REMARK 3 L33: 0.1606 L12: -0.2117 REMARK 3 L13: -0.1125 L23: -0.2265 REMARK 3 S TENSOR REMARK 3 S11: 0.1334 S12: -0.4477 S13: 0.4384 REMARK 3 S21: 0.2382 S22: 0.3586 S23: -0.3779 REMARK 3 S31: -0.2011 S32: 0.3846 S33: 0.0081 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 221 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.7645 -18.3778 37.7242 REMARK 3 T TENSOR REMARK 3 T11: 0.2833 T22: 0.4866 REMARK 3 T33: 0.3923 T12: -0.0140 REMARK 3 T13: -0.0324 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.1923 L22: 1.1825 REMARK 3 L33: 0.5013 L12: -0.4022 REMARK 3 L13: -1.2009 L23: 0.6551 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: -0.1164 S13: 0.0203 REMARK 3 S21: -0.2492 S22: 0.0469 S23: 0.2606 REMARK 3 S31: -0.0561 S32: -0.0533 S33: 0.0324 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 250 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.6272 -15.3287 34.4161 REMARK 3 T TENSOR REMARK 3 T11: 0.3269 T22: 0.6213 REMARK 3 T33: 0.4219 T12: -0.0117 REMARK 3 T13: -0.0244 T23: -0.0931 REMARK 3 L TENSOR REMARK 3 L11: 0.2330 L22: 1.8555 REMARK 3 L33: 1.9375 L12: -0.6744 REMARK 3 L13: -0.0274 L23: -0.6718 REMARK 3 S TENSOR REMARK 3 S11: -0.1578 S12: 0.4033 S13: 0.2235 REMARK 3 S21: -0.4235 S22: 0.2312 S23: 0.2302 REMARK 3 S31: -0.1149 S32: -0.0540 S33: 0.0002 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 273 THROUGH 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3739 -5.4520 29.5639 REMARK 3 T TENSOR REMARK 3 T11: 0.3713 T22: 0.7252 REMARK 3 T33: 0.7146 T12: -0.1126 REMARK 3 T13: 0.0874 T23: -0.1021 REMARK 3 L TENSOR REMARK 3 L11: 0.6702 L22: 0.3615 REMARK 3 L33: 0.0626 L12: -0.1972 REMARK 3 L13: -0.1068 L23: -0.0478 REMARK 3 S TENSOR REMARK 3 S11: -0.3275 S12: 1.6575 S13: -0.4183 REMARK 3 S21: -0.6221 S22: 0.1675 S23: -0.4574 REMARK 3 S31: 0.5698 S32: -1.2456 S33: -0.0489 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 281 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.0401 -17.1407 42.0433 REMARK 3 T TENSOR REMARK 3 T11: 0.1797 T22: 0.6880 REMARK 3 T33: 0.4828 T12: -0.0677 REMARK 3 T13: 0.0310 T23: -0.1603 REMARK 3 L TENSOR REMARK 3 L11: 0.4540 L22: 0.7411 REMARK 3 L33: 0.8271 L12: 0.0267 REMARK 3 L13: -0.5639 L23: 0.0422 REMARK 3 S TENSOR REMARK 3 S11: -0.2344 S12: 0.1630 S13: 0.5276 REMARK 3 S21: -0.4517 S22: 0.0256 S23: 0.6376 REMARK 3 S31: 0.0356 S32: -0.6562 S33: -0.3229 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 295 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.9804 -19.0740 38.5130 REMARK 3 T TENSOR REMARK 3 T11: 0.2904 T22: 0.5798 REMARK 3 T33: 0.4350 T12: -0.0061 REMARK 3 T13: 0.0095 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 0.0911 L22: 0.1607 REMARK 3 L33: 0.1785 L12: -0.0132 REMARK 3 L13: -0.1884 L23: -0.0976 REMARK 3 S TENSOR REMARK 3 S11: 0.1206 S12: -0.0321 S13: 0.0329 REMARK 3 S21: -0.0466 S22: 0.0187 S23: 0.1847 REMARK 3 S31: 0.3219 S32: -0.2922 S33: -0.0000 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 303 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2303 -31.0901 25.9885 REMARK 3 T TENSOR REMARK 3 T11: 0.3856 T22: 0.3216 REMARK 3 T33: 0.3809 T12: -0.0698 REMARK 3 T13: -0.0313 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 3.2424 L22: 1.4397 REMARK 3 L33: 0.7326 L12: 0.1120 REMARK 3 L13: 0.7851 L23: 0.8285 REMARK 3 S TENSOR REMARK 3 S11: 0.0785 S12: -0.2382 S13: -0.4775 REMARK 3 S21: -0.1073 S22: 0.1058 S23: 0.0017 REMARK 3 S31: 0.4958 S32: -0.0709 S33: -0.0000 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 342 THROUGH 359 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0963 -26.3454 39.9319 REMARK 3 T TENSOR REMARK 3 T11: 0.4241 T22: 0.6847 REMARK 3 T33: 0.3472 T12: -0.0303 REMARK 3 T13: 0.0087 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.2710 L22: 1.7320 REMARK 3 L33: 0.6446 L12: -1.1589 REMARK 3 L13: -0.4836 L23: -0.2314 REMARK 3 S TENSOR REMARK 3 S11: 0.1737 S12: -0.5416 S13: -0.4735 REMARK 3 S21: 0.5138 S22: 0.0357 S23: 0.0090 REMARK 3 S31: 0.9616 S32: 0.1518 S33: 0.0114 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 360 THROUGH 372 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.4222 -26.9732 44.7929 REMARK 3 T TENSOR REMARK 3 T11: 0.3882 T22: 0.6121 REMARK 3 T33: 0.4264 T12: -0.0143 REMARK 3 T13: 0.0375 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.5378 L22: 0.8170 REMARK 3 L33: 0.2301 L12: -0.4004 REMARK 3 L13: -0.0872 L23: -0.0673 REMARK 3 S TENSOR REMARK 3 S11: -0.1674 S12: -0.4679 S13: 0.0114 REMARK 3 S21: 0.4961 S22: 0.1974 S23: 0.5867 REMARK 3 S31: 0.6872 S32: 0.5607 S33: 0.0129 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CFP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211543. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11588 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45536 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.066 REMARK 200 RESOLUTION RANGE LOW (A) : 40.931 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.90100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM CITRATE PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.51767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.03533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 176 REMARK 465 SER A 177 REMARK 465 LEU A 178 REMARK 465 SER A 179 REMARK 465 LYS A 180 REMARK 465 VAL A 181 REMARK 465 GLU A 182 REMARK 465 GLU A 183 REMARK 465 SER A 184 REMARK 465 GLN A 185 REMARK 465 LEU A 186 REMARK 465 ASN A 187 REMARK 465 GLU A 188 REMARK 465 LYS A 189 REMARK 465 GLU A 190 REMARK 465 ASN A 191 REMARK 465 LEU A 373 REMARK 465 GLU A 374 REMARK 465 ILE A 375 REMARK 465 GLY A 376 REMARK 465 GLY A 377 REMARK 465 GLY B 176 REMARK 465 SER B 177 REMARK 465 LEU B 178 REMARK 465 SER B 179 REMARK 465 LYS B 180 REMARK 465 VAL B 181 REMARK 465 GLU B 182 REMARK 465 GLU B 183 REMARK 465 SER B 184 REMARK 465 GLN B 185 REMARK 465 LEU B 186 REMARK 465 ASN B 187 REMARK 465 GLU B 188 REMARK 465 LYS B 189 REMARK 465 GLU B 190 REMARK 465 ASN B 191 REMARK 465 LEU B 373 REMARK 465 GLU B 374 REMARK 465 ILE B 375 REMARK 465 GLY B 376 REMARK 465 GLY B 377 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 598 O HOH B 610 1.93 REMARK 500 O HOH A 605 O HOH A 624 1.99 REMARK 500 O HOH B 585 O HOH B 601 2.02 REMARK 500 OH TYR B 253 O HOH B 501 2.05 REMARK 500 O HOH B 519 O HOH B 601 2.06 REMARK 500 NZ LYS A 348 O HOH A 501 2.09 REMARK 500 O HOH A 582 O HOH A 600 2.10 REMARK 500 OH TYR A 253 O HOH A 502 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 206 -74.66 -157.77 REMARK 500 TYR B 206 -74.67 -157.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CFL RELATED DB: PDB REMARK 900 RELATED ID: 5CFM RELATED DB: PDB REMARK 900 RELATED ID: 5CFN RELATED DB: PDB REMARK 900 RELATED ID: 5CFO RELATED DB: PDB REMARK 900 RELATED ID: 5CFQ RELATED DB: PDB REMARK 900 RELATED ID: 5CFR RELATED DB: PDB DBREF 5CFP A 178 377 UNP A7SLZ2 A7SLZ2_NEMVE 178 377 DBREF 5CFP B 178 377 UNP A7SLZ2 A7SLZ2_NEMVE 178 377 SEQADV 5CFP GLY A 176 UNP A7SLZ2 EXPRESSION TAG SEQADV 5CFP SER A 177 UNP A7SLZ2 EXPRESSION TAG SEQADV 5CFP LYS A 276 UNP A7SLZ2 PHE 276 ENGINEERED MUTATION SEQADV 5CFP GLY B 176 UNP A7SLZ2 EXPRESSION TAG SEQADV 5CFP SER B 177 UNP A7SLZ2 EXPRESSION TAG SEQADV 5CFP LYS B 276 UNP A7SLZ2 PHE 276 ENGINEERED MUTATION SEQRES 1 A 202 GLY SER LEU SER LYS VAL GLU GLU SER GLN LEU ASN GLU SEQRES 2 A 202 LYS GLU ASN LYS ASN VAL ALA ASP GLY LEU ALA TRP SER SEQRES 3 A 202 TYR TYR PHE GLY TYR LEU LYS PHE VAL LEU PRO GLU LEU SEQRES 4 A 202 GLU LYS GLN ILE GLU LYS THR SER LYS PHE ARG SER LYS SEQRES 5 A 202 GLU LYS PHE VAL LYS LYS MET PHE ILE LEU ILE PRO SER SEQRES 6 A 202 ASN CYS PHE TRP ASP ASP LYS ILE PRO GLY SER ASP TYR SEQRES 7 A 202 ASP PRO GLN ASN ARG ILE THR PHE GLU GLY ASN THR GLU SEQRES 8 A 202 PRO LEU GLU LYS THR ARG GLY GLY VAL LYS LEU ARG HIS SEQRES 9 A 202 TYR LYS HIS SER VAL TYR GLU ILE LYS ASP GLY GLU ASN SEQRES 10 A 202 GLU PRO TRP PHE CYS ILE MET GLU TYR ALA THR PRO LEU SEQRES 11 A 202 LEU THR LEU TYR ASP MET SER VAL ALA GLN PRO GLY GLU SEQRES 12 A 202 LEU SER ARG GLU GLU ARG ASP ALA GLN VAL VAL VAL PHE SEQRES 13 A 202 LEU ARG LYS LEU GLN ASP ILE LEU GLU GLY ASP ARG ALA SEQRES 14 A 202 CYS GLN GLY LYS TYR GLU LEU VAL THR PHE SER PRO ASP SEQRES 15 A 202 ARG ASP LEU ALA ASP VAL MET LEU ARG LYS LEU LYS ASP SEQRES 16 A 202 SER GLU LEU GLU ILE GLY GLY SEQRES 1 B 202 GLY SER LEU SER LYS VAL GLU GLU SER GLN LEU ASN GLU SEQRES 2 B 202 LYS GLU ASN LYS ASN VAL ALA ASP GLY LEU ALA TRP SER SEQRES 3 B 202 TYR TYR PHE GLY TYR LEU LYS PHE VAL LEU PRO GLU LEU SEQRES 4 B 202 GLU LYS GLN ILE GLU LYS THR SER LYS PHE ARG SER LYS SEQRES 5 B 202 GLU LYS PHE VAL LYS LYS MET PHE ILE LEU ILE PRO SER SEQRES 6 B 202 ASN CYS PHE TRP ASP ASP LYS ILE PRO GLY SER ASP TYR SEQRES 7 B 202 ASP PRO GLN ASN ARG ILE THR PHE GLU GLY ASN THR GLU SEQRES 8 B 202 PRO LEU GLU LYS THR ARG GLY GLY VAL LYS LEU ARG HIS SEQRES 9 B 202 TYR LYS HIS SER VAL TYR GLU ILE LYS ASP GLY GLU ASN SEQRES 10 B 202 GLU PRO TRP PHE CYS ILE MET GLU TYR ALA THR PRO LEU SEQRES 11 B 202 LEU THR LEU TYR ASP MET SER VAL ALA GLN PRO GLY GLU SEQRES 12 B 202 LEU SER ARG GLU GLU ARG ASP ALA GLN VAL VAL VAL PHE SEQRES 13 B 202 LEU ARG LYS LEU GLN ASP ILE LEU GLU GLY ASP ARG ALA SEQRES 14 B 202 CYS GLN GLY LYS TYR GLU LEU VAL THR PHE SER PRO ASP SEQRES 15 B 202 ARG ASP LEU ALA ASP VAL MET LEU ARG LYS LEU LYS ASP SEQRES 16 B 202 SER GLU LEU GLU ILE GLY GLY HET C2E A 401 46 HET C2E B 401 46 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 3 C2E 2(C20 H24 N10 O14 P2) FORMUL 5 HOH *241(H2 O) HELIX 1 AA1 ASN A 193 GLY A 205 1 13 HELIX 2 AA2 TYR A 206 LEU A 211 1 6 HELIX 3 AA3 GLU A 213 GLU A 219 1 7 HELIX 4 AA4 THR A 221 LYS A 227 1 7 HELIX 5 AA5 PRO A 304 GLN A 315 1 12 HELIX 6 AA6 SER A 320 GLY A 341 1 22 HELIX 7 AA7 ASP A 342 GLN A 346 5 5 HELIX 8 AA8 ASP A 359 SER A 371 1 13 HELIX 9 AA9 ASN B 193 GLY B 205 1 13 HELIX 10 AB1 TYR B 206 LEU B 211 1 6 HELIX 11 AB2 GLU B 213 GLU B 219 1 7 HELIX 12 AB3 THR B 221 LYS B 227 1 7 HELIX 13 AB4 PRO B 304 GLN B 315 1 12 HELIX 14 AB5 SER B 320 GLY B 341 1 22 HELIX 15 AB6 ASP B 342 GLN B 346 5 5 HELIX 16 AB7 ASP B 359 SER B 371 1 13 SHEET 1 AA1 5 ILE A 259 ASN A 264 0 SHEET 2 AA1 5 SER A 283 ILE A 287 -1 O VAL A 284 N GLY A 263 SHEET 3 AA1 5 TRP A 295 TYR A 301 -1 O CYS A 297 N TYR A 285 SHEET 4 AA1 5 PHE A 230 PRO A 239 1 N LEU A 237 O GLU A 300 SHEET 5 AA1 5 TYR A 349 PHE A 354 1 O VAL A 352 N ILE A 238 SHEET 1 AA2 2 LEU A 268 ARG A 272 0 SHEET 2 AA2 2 LYS A 276 TYR A 280 -1 O TYR A 280 N LEU A 268 SHEET 1 AA3 5 ILE B 259 ASN B 264 0 SHEET 2 AA3 5 SER B 283 ILE B 287 -1 O VAL B 284 N GLY B 263 SHEET 3 AA3 5 TRP B 295 TYR B 301 -1 O CYS B 297 N TYR B 285 SHEET 4 AA3 5 PHE B 230 PRO B 239 1 N LEU B 237 O GLU B 300 SHEET 5 AA3 5 TYR B 349 PHE B 354 1 O VAL B 352 N ILE B 238 SHEET 1 AA4 2 LEU B 268 ARG B 272 0 SHEET 2 AA4 2 LYS B 276 TYR B 280 -1 O TYR B 280 N LEU B 268 SITE 1 AC1 21 SER A 201 GLY A 205 TYR A 206 ARG A 272 SITE 2 AC1 21 ARG A 278 TYR A 280 THR A 303 PRO A 304 SITE 3 AC1 21 HOH A 515 HOH A 536 HOH A 559 HOH A 567 SITE 4 AC1 21 HOH A 579 SER B 201 TYR B 206 ARG B 278 SITE 5 AC1 21 TYR B 280 GLU B 300 THR B 303 PRO B 304 SITE 6 AC1 21 C2E B 401 SITE 1 AC2 7 ARG A 278 HIS A 279 C2E A 401 HOH A 567 SITE 2 AC2 7 LYS B 276 ARG B 278 HIS B 279 CRYST1 81.388 81.388 100.553 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012287 0.007094 0.000000 0.00000 SCALE2 0.000000 0.014188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009945 0.00000