HEADER TRANSCRIPTION/INHIBITOR 11-JUL-15 5CI8 TITLE CRYSTAL STRUCTURE OF HUMAN TOB IN COMPLEX WITH INHIBITOR FRAGMENT 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TOB1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRANSDUCER OF ERBB-2 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TOB1, TOB, TROB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TOB/BTG FAMILY, INHIBITOR, COMPLEX, TRANSCRIPTION-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.BAI,S.TASHIRO,S.NAGATOISHI,T.SUZUKI,K.TSUMOTO,M.BARTLAM,T.YAMAMOTO REVDAT 2 09-DEC-15 5CI8 1 JRNL REVDAT 1 18-NOV-15 5CI8 0 JRNL AUTH Y.BAI,S.TASHIRO,S.NAGATOISHI,T.SUZUKI,D.YAN,R.LIU,K.TSUMOTO, JRNL AUTH 2 M.BARTLAM,T.YAMAMOTO JRNL TITL STRUCTURAL BASIS FOR INHIBITION OF THE TOB-CNOT7 INTERACTION JRNL TITL 2 BY A FRAGMENT SCREENING APPROACH JRNL REF PROTEIN CELL V. 6 924 2015 JRNL REFN ESSN 1674-8018 JRNL PMID 26518565 JRNL DOI 10.1007/S13238-015-0225-6 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 8828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.970 REMARK 3 FREE R VALUE TEST SET COUNT : 880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.2292 - 3.3574 0.92 1312 145 0.2448 0.2556 REMARK 3 2 3.3574 - 2.9332 0.97 1350 147 0.2546 0.3409 REMARK 3 3 2.9332 - 2.6651 0.98 1352 151 0.2650 0.2883 REMARK 3 4 2.6651 - 2.4741 0.97 1319 147 0.3061 0.3762 REMARK 3 5 2.4741 - 2.3282 0.88 1193 132 0.3486 0.3512 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1011 REMARK 3 ANGLE : 1.044 1365 REMARK 3 CHIRALITY : 0.039 139 REMARK 3 PLANARITY : 0.005 175 REMARK 3 DIHEDRAL : 17.163 381 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8126 -23.7265 7.6836 REMARK 3 T TENSOR REMARK 3 T11: 0.5443 T22: 0.8046 REMARK 3 T33: 0.8604 T12: -0.0556 REMARK 3 T13: 0.0407 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 3.6419 L22: 3.9168 REMARK 3 L33: 5.3109 L12: 2.1206 REMARK 3 L13: -0.6751 L23: 3.3575 REMARK 3 S TENSOR REMARK 3 S11: -0.5536 S12: -0.0591 S13: -0.2554 REMARK 3 S21: 0.4257 S22: 0.6015 S23: 0.2057 REMARK 3 S31: -0.1144 S32: 0.6006 S33: -0.0778 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7609 -23.1592 1.9332 REMARK 3 T TENSOR REMARK 3 T11: 0.5243 T22: 0.8482 REMARK 3 T33: 0.8636 T12: -0.0372 REMARK 3 T13: 0.0802 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 6.1235 L22: 6.9761 REMARK 3 L33: 2.5116 L12: 3.8383 REMARK 3 L13: 0.4364 L23: 1.2399 REMARK 3 S TENSOR REMARK 3 S11: -0.3760 S12: -0.1751 S13: 0.0639 REMARK 3 S21: 0.2653 S22: 0.6896 S23: -0.4402 REMARK 3 S31: -0.1321 S32: 0.4536 S33: -0.2346 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2127 -12.6659 2.6165 REMARK 3 T TENSOR REMARK 3 T11: 0.8612 T22: 0.9298 REMARK 3 T33: 1.9157 T12: 0.0733 REMARK 3 T13: -0.0973 T23: -0.0366 REMARK 3 L TENSOR REMARK 3 L11: 2.1661 L22: 2.3267 REMARK 3 L33: 2.6802 L12: 1.9164 REMARK 3 L13: -0.1098 L23: 0.7172 REMARK 3 S TENSOR REMARK 3 S11: 0.9974 S12: -0.5141 S13: 1.4486 REMARK 3 S21: -0.3879 S22: -0.2135 S23: 0.7979 REMARK 3 S31: -1.4867 S32: -1.2577 S33: -0.1281 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3811 -25.1811 -6.5811 REMARK 3 T TENSOR REMARK 3 T11: 0.7462 T22: 1.0014 REMARK 3 T33: 0.9140 T12: 0.0356 REMARK 3 T13: 0.0369 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 3.3453 L22: 3.6769 REMARK 3 L33: 8.6295 L12: -1.9185 REMARK 3 L13: -1.2040 L23: -1.3493 REMARK 3 S TENSOR REMARK 3 S11: 0.3291 S12: 1.2489 S13: -0.0042 REMARK 3 S21: -0.5147 S22: -0.6460 S23: 0.3807 REMARK 3 S31: 0.6265 S32: -0.1034 S33: -0.0690 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.4566 -34.7016 -6.4000 REMARK 3 T TENSOR REMARK 3 T11: 0.7727 T22: 0.9115 REMARK 3 T33: 1.3328 T12: 0.0204 REMARK 3 T13: -0.0289 T23: -0.2796 REMARK 3 L TENSOR REMARK 3 L11: 3.1930 L22: 3.2237 REMARK 3 L33: 8.1700 L12: 2.7348 REMARK 3 L13: -2.7929 L23: -0.1673 REMARK 3 S TENSOR REMARK 3 S11: -0.1795 S12: 1.4858 S13: -2.8762 REMARK 3 S21: -1.6574 S22: 0.4780 S23: -1.3030 REMARK 3 S31: 0.6654 S32: -0.2445 S33: 0.0664 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7038 -28.0519 1.6066 REMARK 3 T TENSOR REMARK 3 T11: 0.5296 T22: 0.7437 REMARK 3 T33: 1.0085 T12: -0.0181 REMARK 3 T13: -0.1519 T23: -0.1352 REMARK 3 L TENSOR REMARK 3 L11: 4.7012 L22: 9.4039 REMARK 3 L33: 3.2427 L12: 0.4620 REMARK 3 L13: -0.5218 L23: -1.3219 REMARK 3 S TENSOR REMARK 3 S11: 0.3520 S12: 0.3985 S13: -0.2890 REMARK 3 S21: -0.3812 S22: -0.2231 S23: 0.9316 REMARK 3 S31: 0.2053 S32: -0.2965 S33: 0.2056 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7382 -29.7678 5.3734 REMARK 3 T TENSOR REMARK 3 T11: 0.4937 T22: 0.9769 REMARK 3 T33: 1.1008 T12: -0.0107 REMARK 3 T13: -0.0483 T23: -0.1238 REMARK 3 L TENSOR REMARK 3 L11: 3.3056 L22: 9.5355 REMARK 3 L33: 7.7900 L12: 1.3718 REMARK 3 L13: 2.1521 L23: 0.8184 REMARK 3 S TENSOR REMARK 3 S11: 0.3107 S12: 0.8042 S13: -0.2832 REMARK 3 S21: -0.6387 S22: 0.0272 S23: 0.7299 REMARK 3 S31: 0.1868 S32: 0.2852 S33: 0.3476 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CI8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211660. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8867 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 52.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 5.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID PH 5.0, 3.0 M SODIUM REMARK 280 CHLORIDE, 5% DMSO, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.55900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 109.11800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.83850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 136.39750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.27950 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.55900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 109.11800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 136.39750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 81.83850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.27950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 116 REMARK 465 ASN A 117 REMARK 465 ASN A 118 REMARK 465 GLU A 119 REMARK 465 ASN A 120 REMARK 465 GLY A 121 REMARK 465 CYS A 122 REMARK 465 GLU A 123 REMARK 465 LEU A 124 REMARK 465 ASP A 125 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 ILE A 128 REMARK 465 LYS A 129 REMARK 465 ASN A 130 REMARK 465 SER A 131 REMARK 465 PHE A 132 REMARK 465 ASN A 133 REMARK 465 PRO A 134 REMARK 465 GLU A 135 REMARK 465 ALA A 136 REMARK 465 GLN A 137 REMARK 465 VAL A 138 REMARK 465 PHE A 139 REMARK 465 MET A 140 REMARK 465 PRO A 141 REMARK 465 ILE A 142 REMARK 465 SER A 143 REMARK 465 ASP A 144 REMARK 465 PRO A 145 REMARK 465 ALA A 146 REMARK 465 SER A 147 REMARK 465 SER A 148 REMARK 465 VAL A 149 REMARK 465 SER A 150 REMARK 465 SER A 151 REMARK 465 SER A 152 REMARK 465 PRO A 153 REMARK 465 SER A 154 REMARK 465 PRO A 155 REMARK 465 PRO A 156 REMARK 465 PHE A 157 REMARK 465 GLY A 158 REMARK 465 HIS A 159 REMARK 465 SER A 160 REMARK 465 ALA A 161 REMARK 465 ALA A 162 REMARK 465 VAL A 163 REMARK 465 SER A 164 REMARK 465 PRO A 165 REMARK 465 THR A 166 REMARK 465 PHE A 167 REMARK 465 MET A 168 REMARK 465 PRO A 169 REMARK 465 ARG A 170 REMARK 465 SER A 171 REMARK 465 THR A 172 REMARK 465 GLN A 173 REMARK 465 PRO A 174 REMARK 465 LEU A 175 REMARK 465 THR A 176 REMARK 465 PHE A 177 REMARK 465 THR A 178 REMARK 465 THR A 179 REMARK 465 ALA A 180 REMARK 465 THR A 181 REMARK 465 PHE A 182 REMARK 465 ALA A 183 REMARK 465 ALA A 184 REMARK 465 THR A 185 REMARK 465 LYS A 186 REMARK 465 PHE A 187 REMARK 465 GLY A 188 REMARK 465 SER A 189 REMARK 465 THR A 190 REMARK 465 LYS A 191 REMARK 465 MET A 192 REMARK 465 LYS A 193 REMARK 465 ASN A 194 REMARK 465 SER A 195 REMARK 465 GLY A 196 REMARK 465 ARG A 197 REMARK 465 SER A 198 REMARK 465 ASN A 199 REMARK 465 LYS A 200 REMARK 465 VAL A 201 REMARK 465 ALA A 202 REMARK 465 ARG A 203 REMARK 465 THR A 204 REMARK 465 SER A 205 REMARK 465 PRO A 206 REMARK 465 ILE A 207 REMARK 465 ASN A 208 REMARK 465 LEU A 209 REMARK 465 GLY A 210 REMARK 465 LEU A 211 REMARK 465 ASN A 212 REMARK 465 VAL A 213 REMARK 465 ASN A 214 REMARK 465 ASP A 215 REMARK 465 LEU A 216 REMARK 465 LEU A 217 REMARK 465 LYS A 218 REMARK 465 GLN A 219 REMARK 465 LYS A 220 REMARK 465 ALA A 221 REMARK 465 ILE A 222 REMARK 465 SER A 223 REMARK 465 SER A 224 REMARK 465 SER A 225 REMARK 465 MET A 226 REMARK 465 HIS A 227 REMARK 465 SER A 228 REMARK 465 LEU A 229 REMARK 465 TYR A 230 REMARK 465 GLY A 231 REMARK 465 LEU A 232 REMARK 465 GLY A 233 REMARK 465 LEU A 234 REMARK 465 GLY A 235 REMARK 465 SER A 236 REMARK 465 GLN A 237 REMARK 465 GLN A 238 REMARK 465 GLN A 239 REMARK 465 PRO A 240 REMARK 465 GLN A 241 REMARK 465 GLN A 242 REMARK 465 GLN A 243 REMARK 465 GLN A 244 REMARK 465 GLN A 245 REMARK 465 PRO A 246 REMARK 465 ALA A 247 REMARK 465 GLN A 248 REMARK 465 PRO A 249 REMARK 465 PRO A 250 REMARK 465 PRO A 251 REMARK 465 PRO A 252 REMARK 465 PRO A 253 REMARK 465 PRO A 254 REMARK 465 PRO A 255 REMARK 465 PRO A 256 REMARK 465 GLN A 257 REMARK 465 GLN A 258 REMARK 465 GLN A 259 REMARK 465 GLN A 260 REMARK 465 GLN A 261 REMARK 465 GLN A 262 REMARK 465 LYS A 263 REMARK 465 THR A 264 REMARK 465 SER A 265 REMARK 465 ALA A 266 REMARK 465 LEU A 267 REMARK 465 SER A 268 REMARK 465 PRO A 269 REMARK 465 ASN A 270 REMARK 465 ALA A 271 REMARK 465 LYS A 272 REMARK 465 GLU A 273 REMARK 465 PHE A 274 REMARK 465 ILE A 275 REMARK 465 PHE A 276 REMARK 465 PRO A 277 REMARK 465 ASN A 278 REMARK 465 MET A 279 REMARK 465 GLN A 280 REMARK 465 GLY A 281 REMARK 465 GLN A 282 REMARK 465 GLY A 283 REMARK 465 SER A 284 REMARK 465 SER A 285 REMARK 465 THR A 286 REMARK 465 ASN A 287 REMARK 465 GLY A 288 REMARK 465 MET A 289 REMARK 465 PHE A 290 REMARK 465 PRO A 291 REMARK 465 GLY A 292 REMARK 465 ASP A 293 REMARK 465 SER A 294 REMARK 465 PRO A 295 REMARK 465 LEU A 296 REMARK 465 ASN A 297 REMARK 465 LEU A 298 REMARK 465 SER A 299 REMARK 465 PRO A 300 REMARK 465 LEU A 301 REMARK 465 GLN A 302 REMARK 465 TYR A 303 REMARK 465 SER A 304 REMARK 465 ASN A 305 REMARK 465 ALA A 306 REMARK 465 PHE A 307 REMARK 465 ASP A 308 REMARK 465 VAL A 309 REMARK 465 PHE A 310 REMARK 465 ALA A 311 REMARK 465 ALA A 312 REMARK 465 TYR A 313 REMARK 465 GLY A 314 REMARK 465 GLY A 315 REMARK 465 LEU A 316 REMARK 465 ASN A 317 REMARK 465 GLU A 318 REMARK 465 LYS A 319 REMARK 465 SER A 320 REMARK 465 PHE A 321 REMARK 465 VAL A 322 REMARK 465 ASP A 323 REMARK 465 GLY A 324 REMARK 465 LEU A 325 REMARK 465 ASN A 326 REMARK 465 PHE A 327 REMARK 465 SER A 328 REMARK 465 LEU A 329 REMARK 465 ASN A 330 REMARK 465 ASN A 331 REMARK 465 MET A 332 REMARK 465 GLN A 333 REMARK 465 TYR A 334 REMARK 465 SER A 335 REMARK 465 ASN A 336 REMARK 465 GLN A 337 REMARK 465 GLN A 338 REMARK 465 PHE A 339 REMARK 465 GLN A 340 REMARK 465 PRO A 341 REMARK 465 VAL A 342 REMARK 465 MET A 343 REMARK 465 ALA A 344 REMARK 465 ASN A 345 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE1 TRP A 93 H03 53Y A 401 1.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD ARG A 23 O 53Y A 401 8545 1.82 REMARK 500 CD ARG A 23 C08 53Y A 401 8545 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 0 -162.20 170.13 REMARK 500 LYS A 48 78.27 -119.92 REMARK 500 PHE A 97 -5.02 80.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 53Y A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CI9 RELATED DB: PDB DBREF 5CI8 A 1 345 UNP P50616 TOB1_HUMAN 1 345 SEQADV 5CI8 HIS A -1 UNP P50616 EXPRESSION TAG SEQADV 5CI8 HIS A 0 UNP P50616 EXPRESSION TAG SEQRES 1 A 347 HIS HIS MET GLN LEU GLU ILE GLN VAL ALA LEU ASN PHE SEQRES 2 A 347 ILE ILE SER TYR LEU TYR ASN LYS LEU PRO ARG ARG ARG SEQRES 3 A 347 VAL ASN ILE PHE GLY GLU GLU LEU GLU ARG LEU LEU LYS SEQRES 4 A 347 LYS LYS TYR GLU GLY HIS TRP TYR PRO GLU LYS PRO TYR SEQRES 5 A 347 LYS GLY SER GLY PHE ARG CYS ILE HIS ILE GLY GLU LYS SEQRES 6 A 347 VAL ASP PRO VAL ILE GLU GLN ALA SER LYS GLU SER GLY SEQRES 7 A 347 LEU ASP ILE ASP ASP VAL ARG GLY ASN LEU PRO GLN ASP SEQRES 8 A 347 LEU SER VAL TRP ILE ASP PRO PHE GLU VAL SER TYR GLN SEQRES 9 A 347 ILE GLY GLU LYS GLY PRO VAL LYS VAL LEU TYR VAL ASP SEQRES 10 A 347 ASP ASN ASN GLU ASN GLY CYS GLU LEU ASP LYS GLU ILE SEQRES 11 A 347 LYS ASN SER PHE ASN PRO GLU ALA GLN VAL PHE MET PRO SEQRES 12 A 347 ILE SER ASP PRO ALA SER SER VAL SER SER SER PRO SER SEQRES 13 A 347 PRO PRO PHE GLY HIS SER ALA ALA VAL SER PRO THR PHE SEQRES 14 A 347 MET PRO ARG SER THR GLN PRO LEU THR PHE THR THR ALA SEQRES 15 A 347 THR PHE ALA ALA THR LYS PHE GLY SER THR LYS MET LYS SEQRES 16 A 347 ASN SER GLY ARG SER ASN LYS VAL ALA ARG THR SER PRO SEQRES 17 A 347 ILE ASN LEU GLY LEU ASN VAL ASN ASP LEU LEU LYS GLN SEQRES 18 A 347 LYS ALA ILE SER SER SER MET HIS SER LEU TYR GLY LEU SEQRES 19 A 347 GLY LEU GLY SER GLN GLN GLN PRO GLN GLN GLN GLN GLN SEQRES 20 A 347 PRO ALA GLN PRO PRO PRO PRO PRO PRO PRO PRO GLN GLN SEQRES 21 A 347 GLN GLN GLN GLN LYS THR SER ALA LEU SER PRO ASN ALA SEQRES 22 A 347 LYS GLU PHE ILE PHE PRO ASN MET GLN GLY GLN GLY SER SEQRES 23 A 347 SER THR ASN GLY MET PHE PRO GLY ASP SER PRO LEU ASN SEQRES 24 A 347 LEU SER PRO LEU GLN TYR SER ASN ALA PHE ASP VAL PHE SEQRES 25 A 347 ALA ALA TYR GLY GLY LEU ASN GLU LYS SER PHE VAL ASP SEQRES 26 A 347 GLY LEU ASN PHE SER LEU ASN ASN MET GLN TYR SER ASN SEQRES 27 A 347 GLN GLN PHE GLN PRO VAL MET ALA ASN HET 53Y A 401 22 HETNAM 53Y PYRROLO[1,2-A]QUINOXALIN-4(5H)-ONE FORMUL 2 53Y C11 H8 N2 O HELIX 1 AA1 HIS A 0 TYR A 15 1 16 HELIX 2 AA2 PRO A 21 GLU A 41 1 21 HELIX 3 AA3 ASP A 65 GLU A 74 1 10 HELIX 4 AA4 ASP A 78 LEU A 86 1 9 SHEET 1 AA1 4 ILE A 58 ILE A 60 0 SHEET 2 AA1 4 LEU A 90 ASP A 95 -1 O VAL A 92 N ILE A 58 SHEET 3 AA1 4 GLU A 98 ILE A 103 -1 O GLU A 98 N ASP A 95 SHEET 4 AA1 4 VAL A 109 VAL A 114 -1 O LYS A 110 N TYR A 101 LINK NE1 TRP A 93 C03 53Y A 401 1555 1555 1.49 LINK CD ARG A 23 C07 53Y A 401 1555 8545 1.53 SITE 1 AC1 5 PRO A 21 ARG A 23 ARG A 24 GLY A 54 SITE 2 AC1 5 TRP A 93 CRYST1 64.975 64.975 163.677 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015391 0.008886 0.000000 0.00000 SCALE2 0.000000 0.017771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006110 0.00000