HEADER HYDROLASE 13-JUL-15 5CIK TITLE CRYSTAL STRUCTURE OF XAA-PRO DIPEPTIDASE FROM XANTHOMONAS CAMPESTRIS TITLE 2 IN CITRATE CONDITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE DIPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.13.9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS STR. ATCC SOURCE 3 33913; SOURCE 4 ORGANISM_TAXID: 190485; SOURCE 5 STRAIN: ATCC 33913; SOURCE 6 ATCC: 33913; SOURCE 7 GENE: PEPQ, XCC2409; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PST50TR KEYWDS XAA-PRO DIPEPTIDASE, PROLIDASE, M24 FAMILY, CITRATE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KUMAR,V.ARE,B.GHOSH,U.AGRAWAL,S.JAMDAR,R.D.MAKDE REVDAT 3 08-NOV-23 5CIK 1 REMARK REVDAT 2 04-JUL-18 5CIK 1 REMARK REVDAT 1 20-JUL-16 5CIK 0 JRNL AUTH A.KUMAR,V.ARE,B.GHOSH,U.AGRAWAL,S.JAMDAR,R.D.MAKDE JRNL TITL CRYSTAL STRUCTURE OF XAA-PRO DIPEPTIDASE FROM XANTHOMONAS JRNL TITL 2 CAMPESTRIS IN CITRATE CONDITION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 40022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2086 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2667 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.1290 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.1720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5984 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 518 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.232 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.709 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6232 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5897 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8511 ; 1.627 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13503 ; 1.118 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 812 ; 5.719 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 284 ;33.852 ;23.310 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 929 ;11.960 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;19.176 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 946 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7279 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1467 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3197 ; 1.175 ; 1.158 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3196 ; 1.175 ; 1.158 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3999 ; 1.892 ; 1.731 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4000 ; 1.892 ; 1.731 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3035 ; 2.001 ; 1.431 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3035 ; 2.000 ; 1.431 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4504 ; 3.186 ; 2.059 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7249 ; 5.183 ;10.023 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7043 ; 4.941 ; 9.753 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 399 B 3 399 24108 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5CIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211674. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0-5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : RRCAT INDUS-2 REMARK 200 BEAMLINE : PX-BL21 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97947 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : X-RAY MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42175 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.09900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 20.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FKC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID, 20% PEG6000, PH REMARK 280 5.0, MICROBATCH, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.08950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.03150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.83650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.03150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.08950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.83650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 34 CG CD OE1 NE2 REMARK 470 GLN B 46 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 195 NH1 ARG A 243 2.13 REMARK 500 O HOH B 692 O HOH B 718 2.14 REMARK 500 OD2 ASP A 49 O HOH A 501 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 LEU A 149 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 295 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 295 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 295 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 308 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 217 67.59 -154.76 REMARK 500 ASP A 262 102.42 -167.21 REMARK 500 ASP A 319 -121.58 56.83 REMARK 500 GLU A 360 63.57 -155.04 REMARK 500 ALA A 368 -71.51 -125.12 REMARK 500 LEU B 17 46.23 -109.47 REMARK 500 ASP B 134 119.39 -38.92 REMARK 500 ASN B 217 67.56 -156.34 REMARK 500 CYS B 222 119.13 -165.05 REMARK 500 ASP B 262 97.45 -165.20 REMARK 500 ASP B 319 -119.75 60.12 REMARK 500 GLU B 360 60.87 -151.69 REMARK 500 ALA B 368 -70.02 -119.84 REMARK 500 THR B 382 17.75 -140.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4R60 RELATED DB: PDB DBREF 5CIK A 1 399 UNP Q8P839 Q8P839_XANCP 1 399 DBREF 5CIK B 1 399 UNP Q8P839 Q8P839_XANCP 1 399 SEQADV 5CIK SER A 1 UNP Q8P839 MET 1 ENGINEERED MUTATION SEQADV 5CIK SER B 1 UNP Q8P839 MET 1 ENGINEERED MUTATION SEQRES 1 A 399 SER SER THR GLN ILE GLY GLY MET SER LEU ASP GLN ALA SEQRES 2 A 399 ARG THR GLN LEU ALA PRO TRP THR GLN ARG ALA ALA PRO SEQRES 3 A 399 ILE GLY ALA ASP GLU TYR GLN GLN ARG ILE GLU ARG ALA SEQRES 4 A 399 ARG VAL LEU MET ARG ALA GLN GLY VAL ASP ALA LEU LEU SEQRES 5 A 399 ILE GLY ALA GLY THR SER LEU ARG TYR PHE SER GLY VAL SEQRES 6 A 399 PRO TRP GLY ALA SER GLU ARG LEU VAL ALA LEU LEU LEU SEQRES 7 A 399 THR THR GLU GLY ASP PRO VAL LEU ILE CYS PRO ALA PHE SEQRES 8 A 399 GLU GLU GLY SER LEU ASP ALA VAL LEU GLN LEU PRO VAL SEQRES 9 A 399 ARG LYS ARG LEU TRP GLU GLU HIS GLU ASP PRO TYR ALA SEQRES 10 A 399 LEU VAL VAL GLN ALA MET ASP GLU GLN HIS ALA HIS ALA SEQRES 11 A 399 LEU ALA LEU ASP PRO GLY ILE ALA PHE ALA VAL HIS THR SEQRES 12 A 399 GLY LEU ARG ALA HIS LEU GLY THR ALA ILE ARG ASP ALA SEQRES 13 A 399 GLY ALA ILE ILE ASP GLY CYS ARG MET CYS LYS SER PRO SEQRES 14 A 399 ALA GLU LEU ALA LEU MET GLN GLN ALA CYS ASP MET THR SEQRES 15 A 399 LEU LEU VAL GLN ARG LEU ALA ALA GLY ILE ALA HIS GLU SEQRES 16 A 399 GLY ILE GLY THR ASP GLN LEU VAL ARG PHE ILE ASP GLU SEQRES 17 A 399 ALA HIS ARG ALA LEU GLY ALA ASP ASN GLY SER THR PHE SEQRES 18 A 399 CYS ILE VAL GLN PHE GLY HIS ALA THR ALA PHE PRO HIS SEQRES 19 A 399 GLY ILE PRO GLY VAL GLN HIS LEU ARG ALA GLY GLU LEU SEQRES 20 A 399 VAL LEU ILE ASP THR GLY CYS THR VAL GLN GLY TYR HIS SEQRES 21 A 399 SER ASP ILE THR ARG THR TRP ILE TYR GLY THR PRO SER SEQRES 22 A 399 ASP ALA GLN GLN ARG ILE TRP GLU LEU GLU LEU ALA ALA SEQRES 23 A 399 GLN ALA ALA ALA PHE ALA ALA VAL ARG PRO GLY VAL ALA SEQRES 24 A 399 CYS GLU ALA VAL ASP GLN ALA ALA ARG ALA VAL LEU GLN SEQRES 25 A 399 ALA ALA GLY LEU GLY PRO ASP TYR ARG LEU PRO GLY LEU SEQRES 26 A 399 PRO HIS ARG THR GLY HIS GLY CYS GLY LEU ALA ILE HIS SEQRES 27 A 399 GLU ALA PRO TYR LEU VAL ARG GLY ASN ARG GLN PRO LEU SEQRES 28 A 399 GLN PRO GLY MET CYS ALA SER ASN GLU PRO MET ILE VAL SEQRES 29 A 399 VAL PRO GLY ALA PHE GLY VAL ARG LEU GLU ASP HIS PHE SEQRES 30 A 399 TYR VAL THR ASP THR GLY ALA GLN TRP PHE THR PRO PRO SEQRES 31 A 399 SER VAL ALA ILE ASP GLN PRO PHE ALA SEQRES 1 B 399 SER SER THR GLN ILE GLY GLY MET SER LEU ASP GLN ALA SEQRES 2 B 399 ARG THR GLN LEU ALA PRO TRP THR GLN ARG ALA ALA PRO SEQRES 3 B 399 ILE GLY ALA ASP GLU TYR GLN GLN ARG ILE GLU ARG ALA SEQRES 4 B 399 ARG VAL LEU MET ARG ALA GLN GLY VAL ASP ALA LEU LEU SEQRES 5 B 399 ILE GLY ALA GLY THR SER LEU ARG TYR PHE SER GLY VAL SEQRES 6 B 399 PRO TRP GLY ALA SER GLU ARG LEU VAL ALA LEU LEU LEU SEQRES 7 B 399 THR THR GLU GLY ASP PRO VAL LEU ILE CYS PRO ALA PHE SEQRES 8 B 399 GLU GLU GLY SER LEU ASP ALA VAL LEU GLN LEU PRO VAL SEQRES 9 B 399 ARG LYS ARG LEU TRP GLU GLU HIS GLU ASP PRO TYR ALA SEQRES 10 B 399 LEU VAL VAL GLN ALA MET ASP GLU GLN HIS ALA HIS ALA SEQRES 11 B 399 LEU ALA LEU ASP PRO GLY ILE ALA PHE ALA VAL HIS THR SEQRES 12 B 399 GLY LEU ARG ALA HIS LEU GLY THR ALA ILE ARG ASP ALA SEQRES 13 B 399 GLY ALA ILE ILE ASP GLY CYS ARG MET CYS LYS SER PRO SEQRES 14 B 399 ALA GLU LEU ALA LEU MET GLN GLN ALA CYS ASP MET THR SEQRES 15 B 399 LEU LEU VAL GLN ARG LEU ALA ALA GLY ILE ALA HIS GLU SEQRES 16 B 399 GLY ILE GLY THR ASP GLN LEU VAL ARG PHE ILE ASP GLU SEQRES 17 B 399 ALA HIS ARG ALA LEU GLY ALA ASP ASN GLY SER THR PHE SEQRES 18 B 399 CYS ILE VAL GLN PHE GLY HIS ALA THR ALA PHE PRO HIS SEQRES 19 B 399 GLY ILE PRO GLY VAL GLN HIS LEU ARG ALA GLY GLU LEU SEQRES 20 B 399 VAL LEU ILE ASP THR GLY CYS THR VAL GLN GLY TYR HIS SEQRES 21 B 399 SER ASP ILE THR ARG THR TRP ILE TYR GLY THR PRO SER SEQRES 22 B 399 ASP ALA GLN GLN ARG ILE TRP GLU LEU GLU LEU ALA ALA SEQRES 23 B 399 GLN ALA ALA ALA PHE ALA ALA VAL ARG PRO GLY VAL ALA SEQRES 24 B 399 CYS GLU ALA VAL ASP GLN ALA ALA ARG ALA VAL LEU GLN SEQRES 25 B 399 ALA ALA GLY LEU GLY PRO ASP TYR ARG LEU PRO GLY LEU SEQRES 26 B 399 PRO HIS ARG THR GLY HIS GLY CYS GLY LEU ALA ILE HIS SEQRES 27 B 399 GLU ALA PRO TYR LEU VAL ARG GLY ASN ARG GLN PRO LEU SEQRES 28 B 399 GLN PRO GLY MET CYS ALA SER ASN GLU PRO MET ILE VAL SEQRES 29 B 399 VAL PRO GLY ALA PHE GLY VAL ARG LEU GLU ASP HIS PHE SEQRES 30 B 399 TYR VAL THR ASP THR GLY ALA GLN TRP PHE THR PRO PRO SEQRES 31 B 399 SER VAL ALA ILE ASP GLN PRO PHE ALA HET CIT A 401 13 HET GOL A 402 6 HET GOL A 403 6 HET CIT B 401 13 HETNAM CIT CITRIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CIT 2(C6 H8 O7) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *518(H2 O) HELIX 1 AA1 SER A 9 GLN A 16 1 8 HELIX 2 AA2 GLY A 28 GLN A 46 1 19 HELIX 3 AA3 GLY A 56 GLY A 64 1 9 HELIX 4 AA4 GLU A 92 LEU A 100 1 9 HELIX 5 AA5 ASP A 114 GLN A 126 1 13 HELIX 6 AA6 PHE A 139 ALA A 147 1 9 HELIX 7 AA7 ALA A 156 MET A 165 1 10 HELIX 8 AA8 SER A 168 ALA A 193 1 26 HELIX 9 AA9 GLY A 198 GLY A 214 1 17 HELIX 10 AB1 HIS A 228 PHE A 232 5 5 HELIX 11 AB2 SER A 273 ALA A 293 1 21 HELIX 12 AB3 ALA A 299 ALA A 314 1 16 HELIX 13 AB4 SER B 9 GLN B 16 1 8 HELIX 14 AB5 GLY B 28 GLN B 46 1 19 HELIX 15 AB6 GLY B 56 GLY B 64 1 9 HELIX 16 AB7 GLU B 92 LEU B 100 1 9 HELIX 17 AB8 ASP B 114 GLN B 126 1 13 HELIX 18 AB9 ALA B 138 ALA B 147 1 10 HELIX 19 AC1 ALA B 156 MET B 165 1 10 HELIX 20 AC2 SER B 168 ALA B 193 1 26 HELIX 21 AC3 GLY B 198 GLY B 214 1 17 HELIX 22 AC4 HIS B 228 PHE B 232 5 5 HELIX 23 AC5 SER B 273 ALA B 293 1 21 HELIX 24 AC6 ALA B 299 ALA B 314 1 16 SHEET 1 AA1 6 ARG A 105 TRP A 109 0 SHEET 2 AA1 6 VAL A 85 PRO A 89 1 N LEU A 86 O ARG A 107 SHEET 3 AA1 6 ALA A 75 THR A 79 -1 N LEU A 77 O VAL A 85 SHEET 4 AA1 6 ALA A 50 GLY A 54 -1 N LEU A 51 O LEU A 78 SHEET 5 AA1 6 LEU A 131 LEU A 133 1 O ALA A 132 N ALA A 50 SHEET 6 AA1 6 ILE A 153 ASP A 155 1 O ARG A 154 N LEU A 133 SHEET 1 AA2 3 PHE A 221 PHE A 226 0 SHEET 2 AA2 3 LEU A 247 GLY A 253 -1 O LEU A 249 N GLN A 225 SHEET 3 AA2 3 ILE A 263 ILE A 268 -1 O TRP A 267 N VAL A 248 SHEET 1 AA3 2 THR A 255 VAL A 256 0 SHEET 2 AA3 2 TYR A 259 HIS A 260 -1 O TYR A 259 N VAL A 256 SHEET 1 AA4 2 GLY A 330 GLY A 332 0 SHEET 2 AA4 2 GLU A 339 LEU A 343 -1 O LEU A 343 N GLY A 330 SHEET 1 AA5 3 CYS A 356 ASN A 359 0 SHEET 2 AA5 3 ASP A 375 VAL A 379 -1 O PHE A 377 N ALA A 357 SHEET 3 AA5 3 ALA A 384 TRP A 386 -1 O GLN A 385 N TYR A 378 SHEET 1 AA6 2 ILE A 363 VAL A 365 0 SHEET 2 AA6 2 PHE A 369 VAL A 371 -1 O PHE A 369 N VAL A 365 SHEET 1 AA7 6 ARG B 105 TRP B 109 0 SHEET 2 AA7 6 VAL B 85 PRO B 89 1 N LEU B 86 O ARG B 105 SHEET 3 AA7 6 ALA B 75 THR B 79 -1 N LEU B 77 O VAL B 85 SHEET 4 AA7 6 ALA B 50 GLY B 54 -1 N LEU B 51 O LEU B 78 SHEET 5 AA7 6 LEU B 131 LEU B 133 1 O ALA B 132 N ALA B 50 SHEET 6 AA7 6 ARG B 154 ASP B 155 1 O ARG B 154 N LEU B 133 SHEET 1 AA8 3 PHE B 221 PHE B 226 0 SHEET 2 AA8 3 GLU B 246 GLY B 253 -1 O LEU B 249 N GLN B 225 SHEET 3 AA8 3 ILE B 263 TYR B 269 -1 O TRP B 267 N VAL B 248 SHEET 1 AA9 2 THR B 255 VAL B 256 0 SHEET 2 AA9 2 TYR B 259 HIS B 260 -1 O TYR B 259 N VAL B 256 SHEET 1 AB1 2 GLY B 330 GLY B 332 0 SHEET 2 AB1 2 GLU B 339 LEU B 343 -1 O LEU B 343 N GLY B 330 SHEET 1 AB2 3 CYS B 356 ASN B 359 0 SHEET 2 AB2 3 ASP B 375 VAL B 379 -1 O PHE B 377 N ALA B 357 SHEET 3 AB2 3 ALA B 384 TRP B 386 -1 O GLN B 385 N TYR B 378 SHEET 1 AB3 2 ILE B 363 VAL B 365 0 SHEET 2 AB3 2 PHE B 369 VAL B 371 -1 O PHE B 369 N VAL B 365 CISPEP 1 GLY A 317 PRO A 318 0 3.03 CISPEP 2 LEU A 322 PRO A 323 0 1.81 CISPEP 3 ALA A 340 PRO A 341 0 2.38 CISPEP 4 GLY B 317 PRO B 318 0 -0.23 CISPEP 5 LEU B 322 PRO B 323 0 0.81 CISPEP 6 ALA B 340 PRO B 341 0 1.96 SITE 1 AC1 11 PRO A 233 HIS A 234 HIS A 327 ARG A 328 SITE 2 AC1 11 HIS A 331 HIS A 338 GLU A 360 MET A 362 SITE 3 AC1 11 ARG A 372 HOH A 589 ARG B 72 SITE 1 AC2 8 THR A 380 THR A 382 ALA A 384 GLN A 385 SITE 2 AC2 8 THR B 380 THR B 382 ALA B 384 GLN B 385 SITE 1 AC3 9 ARG A 40 GLU A 81 GLY A 82 ASP A 83 SITE 2 AC3 9 PHE B 226 HIS B 228 ALA B 229 GLN B 240 SITE 3 AC3 9 GLU B 246 SITE 1 AC4 10 ARG A 72 PRO B 233 HIS B 327 ARG B 328 SITE 2 AC4 10 HIS B 331 HIS B 338 GLU B 360 MET B 362 SITE 3 AC4 10 ARG B 372 HOH B 586 CRYST1 58.179 103.673 136.063 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017188 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007350 0.00000