HEADER TRANSFERASE 15-JUL-15 5CK7 TITLE MOUSE ADP-DEPENDENT GLUCOKINASE; AMP BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-DEPENDENT GLUCOKINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 51-495; COMPND 5 SYNONYM: ADPGK; COMPND 6 EC: 2.7.1.147; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ADPGK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD-TOPO KEYWDS ADPGK, RIBOKINASE, KINASE, AMP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.P.RICHTER,R.S.RONIMUS,A.J.SUTHERLAND-SMITH REVDAT 3 27-SEP-23 5CK7 1 REMARK REVDAT 2 19-JUN-19 5CK7 1 JRNL REMARK REVDAT 1 18-NOV-15 5CK7 0 JRNL AUTH J.P.RICHTER,A.K.GORONCY,R.S.RONIMUS,A.J.SUTHERLAND-SMITH JRNL TITL THE STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF MAMMALIAN JRNL TITL 2 ADP-DEPENDENT GLUCOKINASE. JRNL REF J.BIOL.CHEM. V. 291 3694 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26555263 JRNL DOI 10.1074/JBC.M115.679902 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 8542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 449 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 484 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3447 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.20000 REMARK 3 B22 (A**2) : -2.78000 REMARK 3 B33 (A**2) : 4.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.479 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.383 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 44.368 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3555 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3354 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4839 ; 1.696 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7708 ; 1.043 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 447 ; 6.269 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;39.018 ;23.836 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 562 ;16.559 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;20.283 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 545 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4046 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 827 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1791 ; 2.045 ; 3.638 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1790 ; 2.045 ; 3.636 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2237 ; 3.415 ; 5.457 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2238 ; 3.414 ; 5.459 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1764 ; 2.048 ; 3.846 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1765 ; 2.047 ; 3.847 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2603 ; 3.386 ; 5.702 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 15509 ; 8.153 ;35.372 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 15509 ; 8.153 ;35.375 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 495 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2534 -1.0758 20.7389 REMARK 3 T TENSOR REMARK 3 T11: 0.2952 T22: 0.1672 REMARK 3 T33: 0.0276 T12: -0.0842 REMARK 3 T13: 0.0391 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.8859 L22: 2.9887 REMARK 3 L33: 1.6974 L12: 0.1230 REMARK 3 L13: 0.3332 L23: -0.6580 REMARK 3 S TENSOR REMARK 3 S11: 0.1611 S12: -0.3603 S13: 0.0445 REMARK 3 S21: 0.7162 S22: -0.0308 S23: 0.2444 REMARK 3 S31: 0.2209 S32: -0.2897 S33: -0.1303 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5CK7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000208136. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9031 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.990 REMARK 200 RESOLUTION RANGE LOW (A) : 39.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 5CCF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SEEDING OF PREEQUILIBRATED DROPS OF REMARK 280 0.2 M NH4CL, 20% W/V PEG 3350, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.84050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.85400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.24600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.85400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.84050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.24600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 38 REMARK 465 GLY A 39 REMARK 465 SER A 40 REMARK 465 GLY A 41 REMARK 465 SER A 42 REMARK 465 GLY A 43 REMARK 465 ASP A 44 REMARK 465 ASP A 45 REMARK 465 ASP A 46 REMARK 465 ASP A 47 REMARK 465 LYS A 496 REMARK 465 GLY A 497 REMARK 465 GLN A 498 REMARK 465 LEU A 499 REMARK 465 GLN A 500 REMARK 465 GLY A 501 REMARK 465 LYS A 502 REMARK 465 PRO A 503 REMARK 465 ILE A 504 REMARK 465 PRO A 505 REMARK 465 ASN A 506 REMARK 465 PRO A 507 REMARK 465 LEU A 508 REMARK 465 LEU A 509 REMARK 465 GLY A 510 REMARK 465 LEU A 511 REMARK 465 ASP A 512 REMARK 465 SER A 513 REMARK 465 THR A 514 REMARK 465 ARG A 515 REMARK 465 THR A 516 REMARK 465 GLY A 517 REMARK 465 HIS A 518 REMARK 465 HIS A 519 REMARK 465 HIS A 520 REMARK 465 HIS A 521 REMARK 465 HIS A 522 REMARK 465 HIS A 523 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 ASP A 495 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 368 OD1 ASN A 370 1.86 REMARK 500 OE1 GLU A 305 O HOH A 701 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 364 OE2 GLU A 417 1455 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 62 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 277 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 SER A 300 CA - CB - OG ANGL. DEV. = 18.6 DEGREES REMARK 500 HIS A 312 CB - CA - C ANGL. DEV. = 13.5 DEGREES REMARK 500 LEU A 331 CB - CG - CD2 ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG A 456 NE - CZ - NH2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 471 N - CA - CB ANGL. DEV. = -21.7 DEGREES REMARK 500 ASP A 471 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 474 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 240 55.31 39.72 REMARK 500 SER A 300 74.47 11.18 REMARK 500 ALA A 335 -87.84 -81.25 REMARK 500 SER A 336 -54.12 -125.74 REMARK 500 HIS A 339 36.84 -141.50 REMARK 500 ARG A 456 98.40 -162.53 REMARK 500 ASP A 471 63.13 -119.77 REMARK 500 ARG A 474 111.78 -170.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CCF RELATED DB: PDB DBREF 5CK7 A 51 495 UNP Q8VDL4 ADPGK_MOUSE 51 495 SEQADV 5CK7 MET A 38 UNP Q8VDL4 INITIATING METHIONINE SEQADV 5CK7 GLY A 39 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 SER A 40 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 GLY A 41 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 SER A 42 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 GLY A 43 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 ASP A 44 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 ASP A 45 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 ASP A 46 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 ASP A 47 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 LYS A 48 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 LEU A 49 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 ALA A 50 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 SER A 372 UNP Q8VDL4 ALA 372 CONFLICT SEQADV 5CK7 LYS A 496 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 GLY A 497 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 GLN A 498 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 LEU A 499 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 GLN A 500 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 GLY A 501 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 LYS A 502 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 PRO A 503 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 ILE A 504 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 PRO A 505 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 ASN A 506 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 PRO A 507 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 LEU A 508 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 LEU A 509 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 GLY A 510 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 LEU A 511 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 ASP A 512 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 SER A 513 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 THR A 514 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 ARG A 515 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 THR A 516 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 GLY A 517 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 HIS A 518 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 HIS A 519 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 HIS A 520 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 HIS A 521 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 HIS A 522 UNP Q8VDL4 EXPRESSION TAG SEQADV 5CK7 HIS A 523 UNP Q8VDL4 EXPRESSION TAG SEQRES 1 A 486 MET GLY SER GLY SER GLY ASP ASP ASP ASP LYS LEU ALA SEQRES 2 A 486 LEU SER PRO GLU SER ARG LEU ALA ALA ALA TRP ASP ALA SEQRES 3 A 486 LEU ILE ALA GLN PRO ALA ARG ARG TRP ARG ARG VAL ALA SEQRES 4 A 486 VAL GLY VAL ASN ALA CYS VAL ASP VAL VAL ILE SER GLY SEQRES 5 A 486 VAL LYS LEU LEU GLN ALA LEU GLY LEU SER PRO GLY SER SEQRES 6 A 486 GLY LYS ASP HIS ALA ILE LEU HIS SER ARG SER ASP LEU SEQRES 7 A 486 GLU GLU ALA PHE LEU TYR PHE MET GLY LYS GLY ALA ALA SEQRES 8 A 486 ALA GLU ARG PHE PHE SER ASP LYS GLU THR PHE HIS ASP SEQRES 9 A 486 ILE ALA GLN ALA ALA SER GLU PHE PRO GLY ALA GLN HIS SEQRES 10 A 486 TYR VAL GLY GLY ASN ALA ALA LEU ILE GLY GLN ARG PHE SEQRES 11 A 486 ALA ALA ASN THR ASP LEU LYS VAL LEU LEU CYS GLY PRO SEQRES 12 A 486 ILE GLY PRO LYS LEU HIS GLU LEU LEU ASP ASP ASN VAL SEQRES 13 A 486 PHE VAL PRO PRO GLU SER LEU GLN GLU GLU ASP GLU PHE SEQRES 14 A 486 HIS LEU ILE LEU GLU TYR LEU ALA GLY GLU GLU TRP GLY SEQRES 15 A 486 PRO PHE LYS ALA PRO HIS ALA ASN ARG PHE ILE PHE SER SEQRES 16 A 486 HIS ASP LEU SER ASN GLY ALA MET ASN MET LEU GLU VAL SEQRES 17 A 486 PHE VAL SER SER LEU GLU GLU PHE GLN PRO ASP LEU VAL SEQRES 18 A 486 VAL LEU SER GLY LEU HIS MET MET GLU GLY GLN SER LYS SEQRES 19 A 486 GLU LEU GLN ARG LYS ARG LEU LEU GLU VAL VAL THR ALA SEQRES 20 A 486 ILE SER ASP ILE PRO THR GLY ILE PRO VAL HIS LEU GLU SEQRES 21 A 486 LEU ALA SER MET THR ASN ARG GLU LEU MET SER SER ILE SEQRES 22 A 486 VAL HIS GLN VAL PHE PRO ALA VAL ALA SER LEU GLY LEU SEQRES 23 A 486 ASN GLU GLN GLU LEU LEU PHE LEU SER GLN SER ALA SER SEQRES 24 A 486 GLY PRO HIS SER SER LEU SER SER TRP ASP GLY VAL PRO SEQRES 25 A 486 ASP VAL GLY MET VAL SER ASP ILE LEU PHE TRP ILE LEU SEQRES 26 A 486 LYS GLU HIS GLY ARG SER GLU ASN ARG SER SER ASP LEU SEQRES 27 A 486 THR ARG ILE HIS PHE HIS THR LEU VAL TYR HIS ILE LEU SEQRES 28 A 486 ALA THR VAL ASP GLY HIS TRP ALA ASN GLN LEU ALA ALA SEQRES 29 A 486 VAL ALA ALA GLY ALA ARG VAL ALA GLY THR GLN ALA CYS SEQRES 30 A 486 ALA THR GLU THR ILE ASP THR ASN ARG VAL SER LEU ARG SEQRES 31 A 486 ALA PRO GLN GLU PHE THR THR SER HIS LEU GLU SER GLY SEQRES 32 A 486 SER ARG ILE VAL LEU ASN PRO ASP LYS PRO VAL VAL GLU SEQRES 33 A 486 TRP HIS ARG GLU GLY ILE THR PHE HIS PHE THR PRO VAL SEQRES 34 A 486 LEU VAL CYS LYS ASP PRO VAL ARG THR VAL GLY LEU GLY SEQRES 35 A 486 ASP ALA ILE SER ALA GLU GLY LEU PHE TYR SER GLU ALA SEQRES 36 A 486 ARG PRO ASP LYS GLY GLN LEU GLN GLY LYS PRO ILE PRO SEQRES 37 A 486 ASN PRO LEU LEU GLY LEU ASP SER THR ARG THR GLY HIS SEQRES 38 A 486 HIS HIS HIS HIS HIS HET AMP A 601 23 HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 HOH *27(H2 O) HELIX 1 AA1 SER A 52 ILE A 65 1 14 HELIX 2 AA2 GLY A 89 LEU A 96 1 8 HELIX 3 AA3 SER A 111 GLY A 126 1 16 HELIX 4 AA4 ASP A 135 PHE A 149 1 15 HELIX 5 AA5 GLY A 158 ALA A 169 1 12 HELIX 6 AA6 GLY A 182 LEU A 189 1 8 HELIX 7 AA7 PRO A 196 LEU A 200 5 5 HELIX 8 AA8 ASP A 234 ALA A 239 1 6 HELIX 9 AA9 MET A 242 GLN A 254 1 13 HELIX 10 AB1 GLY A 262 GLU A 267 5 6 HELIX 11 AB2 SER A 270 ILE A 288 1 19 HELIX 12 AB3 ASN A 303 VAL A 314 1 12 HELIX 13 AB4 PHE A 315 VAL A 318 5 4 HELIX 14 AB5 ASN A 324 ALA A 335 1 12 HELIX 15 AB6 ASP A 350 GLY A 366 1 17 HELIX 16 AB7 ASN A 397 ALA A 415 1 19 HELIX 17 AB8 GLY A 477 TYR A 489 1 13 SHEET 1 AA110 VAL A 193 PHE A 194 0 SHEET 2 AA110 LYS A 174 LEU A 177 1 N VAL A 175 O PHE A 194 SHEET 3 AA110 ARG A 74 GLY A 78 1 N VAL A 77 O LEU A 176 SHEET 4 AA110 LEU A 257 LEU A 260 1 O VAL A 259 N ALA A 76 SHEET 5 AA110 VAL A 294 GLU A 297 1 O HIS A 295 N LEU A 260 SHEET 6 AA110 SER A 320 LEU A 323 1 O SER A 320 N LEU A 296 SHEET 7 AA110 ARG A 377 HIS A 381 1 O HIS A 379 N LEU A 321 SHEET 8 AA110 TYR A 385 VAL A 391 -1 O ILE A 387 N PHE A 380 SHEET 9 AA110 ILE A 459 PRO A 465 -1 O THR A 460 N THR A 390 SHEET 10 AA110 VAL A 452 ARG A 456 -1 N VAL A 452 O PHE A 463 SHEET 1 AA2 5 ALA A 129 PHE A 132 0 SHEET 2 AA2 5 ASN A 227 SER A 232 1 O ILE A 230 N ARG A 131 SHEET 3 AA2 5 PHE A 206 TYR A 212 -1 N LEU A 210 O PHE A 229 SHEET 4 AA2 5 CYS A 82 SER A 88 1 N VAL A 85 O ILE A 209 SHEET 5 AA2 5 GLN A 153 GLY A 157 -1 O TYR A 155 N ASP A 84 SHEET 1 AA3 2 GLU A 217 TRP A 218 0 SHEET 2 AA3 2 PHE A 221 LYS A 222 -1 O PHE A 221 N TRP A 218 SHEET 1 AA4 2 TRP A 395 ALA A 396 0 SHEET 2 AA4 2 GLU A 491 ALA A 492 -1 O GLU A 491 N ALA A 396 SHEET 1 AA5 2 VAL A 424 LEU A 426 0 SHEET 2 AA5 2 LEU A 467 CYS A 469 -1 O VAL A 468 N SER A 425 SHEET 1 AA6 2 GLU A 431 THR A 433 0 SHEET 2 AA6 2 ARG A 442 VAL A 444 -1 O ILE A 443 N PHE A 432 SSBOND 1 CYS A 414 CYS A 469 1555 1555 2.05 CISPEP 1 GLY A 78 VAL A 79 0 3.46 SITE 1 AC1 12 ASN A 324 HIS A 381 THR A 382 LEU A 383 SITE 2 AC1 12 HIS A 386 ALA A 409 ALA A 413 VAL A 468 SITE 3 AC1 12 CYS A 469 LEU A 478 GLY A 479 ILE A 482 CRYST1 45.681 58.492 161.708 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021891 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017096 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006184 0.00000