HEADER HYDROLASE 15-JUL-15 5CKE TITLE E.COLI MAZF E24A FORM IIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDORIBONUCLEASE MAZF; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TOXIN MAZF,MRNA INTERFERASE MAZF; COMPND 5 EC: 3.1.27.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: MAZF, CHPA, CHPAK, B2782, JW2753; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOXIN-ANTITOXIN, MRNA INTERFERASE, RIBONUCLEASE, PERSISTENCE, KEYWDS 2 BACTERIAL STRESS RESPONSE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.ZORZINI,R.LORIS REVDAT 4 10-JAN-24 5CKE 1 REMARK REVDAT 3 08-JUN-16 5CKE 1 JRNL REVDAT 2 13-APR-16 5CKE 1 JRNL REVDAT 1 06-APR-16 5CKE 0 JRNL AUTH V.ZORZINI,A.MERNIK,J.LAH,Y.G.STERCKX,N.DE JONGE, JRNL AUTH 2 A.GARCIA-PINO,H.DE GREVE,W.VERSEES,R.LORIS JRNL TITL SUBSTRATE RECOGNITION AND ACTIVITY REGULATION OF THE JRNL TITL 2 ESCHERICHIA COLI MRNA ENDONUCLEASE MAZF. JRNL REF J.BIOL.CHEM. V. 291 10950 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27026704 JRNL DOI 10.1074/JBC.M116.715912 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 11772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 0.0000 - 3.6671 0.99 2988 162 0.2071 0.2713 REMARK 3 2 3.6671 - 2.9114 1.00 2790 160 0.1807 0.2636 REMARK 3 3 2.9114 - 2.5436 1.00 2774 125 0.2268 0.2601 REMARK 3 4 2.5436 - 2.3111 0.97 2657 116 0.2986 0.3463 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 63.82 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.52260 REMARK 3 B22 (A**2) : 4.52260 REMARK 3 B33 (A**2) : -9.04530 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 1587 REMARK 3 ANGLE : 1.965 2160 REMARK 3 CHIRALITY : 0.136 253 REMARK 3 PLANARITY : 0.010 272 REMARK 3 DIHEDRAL : 16.938 564 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 8.5449 -23.4604 -18.2460 REMARK 3 T TENSOR REMARK 3 T11: 0.1196 T22: 0.2051 REMARK 3 T33: 0.1626 T12: -0.0187 REMARK 3 T13: 0.0060 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.3099 L22: 0.3880 REMARK 3 L33: 1.1826 L12: 0.0502 REMARK 3 L13: 0.7857 L23: 0.1419 REMARK 3 S TENSOR REMARK 3 S11: 0.1745 S12: 0.2488 S13: 0.0811 REMARK 3 S21: -0.0107 S22: -0.0917 S23: 0.0161 REMARK 3 S31: 0.0530 S32: -0.1859 S33: 0.0173 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 13.0127 -20.0791 2.1831 REMARK 3 T TENSOR REMARK 3 T11: 0.1976 T22: 0.2219 REMARK 3 T33: 0.1708 T12: -0.0407 REMARK 3 T13: 0.0006 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 0.7742 L22: 1.1686 REMARK 3 L33: 1.4024 L12: 0.4246 REMARK 3 L13: 0.3733 L23: 0.3450 REMARK 3 S TENSOR REMARK 3 S11: 0.0788 S12: -0.3007 S13: 0.1678 REMARK 3 S21: 0.1818 S22: -0.1896 S23: 0.0513 REMARK 3 S31: -0.1235 S32: -0.1199 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CKE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8081 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11801 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 33.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11500 REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.74200 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1UB4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 MES PH 6.2, 1.6M AMMONIUM SULFATE, REMARK 280 10% (V/V) 1,4-DIOXANE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.58033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 145.16067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.87050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 181.45083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.29017 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.58033 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 145.16067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 181.45083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 108.87050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.29017 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 18 REMARK 465 PRO A 19 REMARK 465 THR A 20 REMARK 465 LYS A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 ALA A 24 REMARK 465 GLN A 25 REMARK 465 ALA A 26 REMARK 465 GLY A 27 REMARK 465 SER A 113 REMARK 465 HIS A 114 REMARK 465 HIS A 115 REMARK 465 HIS A 116 REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 HIS A 119 REMARK 465 MET B 1 REMARK 465 SER B 113 REMARK 465 HIS B 114 REMARK 465 HIS B 115 REMARK 465 HIS B 116 REMARK 465 HIS B 117 REMARK 465 HIS B 118 REMARK 465 HIS B 119 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 17 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS A 28 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 53 OG1 CG2 REMARK 470 GLN A 54 CG CD OE1 NE2 REMARK 470 GLN A 67 CG CD OE1 NE2 REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 70 CB CG OD1 OD2 REMARK 470 GLU A 97 CD OE1 OE2 REMARK 470 LEU A 112 CG CD1 CD2 REMARK 470 ARG B 4 CD NE CZ NH1 NH2 REMARK 470 THR B 20 OG1 CG2 REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 SER B 23 OG REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 42 CE NZ REMARK 470 GLN B 54 CB CG CD OE1 NE2 REMARK 470 LYS B 56 CG CD CE NZ REMARK 470 TYR B 58 CD2 CE2 CZ OH REMARK 470 GLN B 67 CG CD OE1 NE2 REMARK 470 GLU B 68 CG CD OE1 OE2 REMARK 470 ARG B 69 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 212 O HOH A 212 10554 2.08 REMARK 500 O HOH A 225 O HOH B 327 8445 2.09 REMARK 500 NH1 ARG A 4 O4 SO4 B 201 5554 2.12 REMARK 500 OD1 ASP A 16 N SER B 23 5554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 72 CB VAL A 72 CG2 -0.140 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 84 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 67 -132.48 54.70 REMARK 500 GLU A 68 -144.27 57.99 REMARK 500 ARG A 69 -73.74 -62.83 REMARK 500 GLN A 77 30.09 -87.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN B 77 10.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 330 DISTANCE = 9.71 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD B 202 DBREF 5CKE A 1 111 UNP P0AE70 MAZF_ECOLI 1 111 DBREF 5CKE B 1 111 UNP P0AE70 MAZF_ECOLI 1 111 SEQADV 5CKE ALA A 24 UNP P0AE70 GLU 24 ENGINEERED MUTATION SEQADV 5CKE LEU A 112 UNP P0AE70 EXPRESSION TAG SEQADV 5CKE SER A 113 UNP P0AE70 EXPRESSION TAG SEQADV 5CKE HIS A 114 UNP P0AE70 EXPRESSION TAG SEQADV 5CKE HIS A 115 UNP P0AE70 EXPRESSION TAG SEQADV 5CKE HIS A 116 UNP P0AE70 EXPRESSION TAG SEQADV 5CKE HIS A 117 UNP P0AE70 EXPRESSION TAG SEQADV 5CKE HIS A 118 UNP P0AE70 EXPRESSION TAG SEQADV 5CKE HIS A 119 UNP P0AE70 EXPRESSION TAG SEQADV 5CKE ALA B 24 UNP P0AE70 GLU 24 ENGINEERED MUTATION SEQADV 5CKE LEU B 112 UNP P0AE70 EXPRESSION TAG SEQADV 5CKE SER B 113 UNP P0AE70 EXPRESSION TAG SEQADV 5CKE HIS B 114 UNP P0AE70 EXPRESSION TAG SEQADV 5CKE HIS B 115 UNP P0AE70 EXPRESSION TAG SEQADV 5CKE HIS B 116 UNP P0AE70 EXPRESSION TAG SEQADV 5CKE HIS B 117 UNP P0AE70 EXPRESSION TAG SEQADV 5CKE HIS B 118 UNP P0AE70 EXPRESSION TAG SEQADV 5CKE HIS B 119 UNP P0AE70 EXPRESSION TAG SEQRES 1 A 119 MET VAL SER ARG TYR VAL PRO ASP MET GLY ASP LEU ILE SEQRES 2 A 119 TRP VAL ASP PHE ASP PRO THR LYS GLY SER ALA GLN ALA SEQRES 3 A 119 GLY HIS ARG PRO ALA VAL VAL LEU SER PRO PHE MET TYR SEQRES 4 A 119 ASN ASN LYS THR GLY MET CYS LEU CYS VAL PRO CYS THR SEQRES 5 A 119 THR GLN SER LYS GLY TYR PRO PHE GLU VAL VAL LEU SER SEQRES 6 A 119 GLY GLN GLU ARG ASP GLY VAL ALA LEU ALA ASP GLN VAL SEQRES 7 A 119 LYS SER ILE ALA TRP ARG ALA ARG GLY ALA THR LYS LYS SEQRES 8 A 119 GLY THR VAL ALA PRO GLU GLU LEU GLN LEU ILE LYS ALA SEQRES 9 A 119 LYS ILE ASN VAL LEU ILE GLY LEU SER HIS HIS HIS HIS SEQRES 10 A 119 HIS HIS SEQRES 1 B 119 MET VAL SER ARG TYR VAL PRO ASP MET GLY ASP LEU ILE SEQRES 2 B 119 TRP VAL ASP PHE ASP PRO THR LYS GLY SER ALA GLN ALA SEQRES 3 B 119 GLY HIS ARG PRO ALA VAL VAL LEU SER PRO PHE MET TYR SEQRES 4 B 119 ASN ASN LYS THR GLY MET CYS LEU CYS VAL PRO CYS THR SEQRES 5 B 119 THR GLN SER LYS GLY TYR PRO PHE GLU VAL VAL LEU SER SEQRES 6 B 119 GLY GLN GLU ARG ASP GLY VAL ALA LEU ALA ASP GLN VAL SEQRES 7 B 119 LYS SER ILE ALA TRP ARG ALA ARG GLY ALA THR LYS LYS SEQRES 8 B 119 GLY THR VAL ALA PRO GLU GLU LEU GLN LEU ILE LYS ALA SEQRES 9 B 119 LYS ILE ASN VAL LEU ILE GLY LEU SER HIS HIS HIS HIS SEQRES 10 B 119 HIS HIS HET SO4 B 201 5 HET MRD B 202 16 HETNAM SO4 SULFATE ION HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL FORMUL 3 SO4 O4 S 2- FORMUL 4 MRD C6 H14 O2 FORMUL 5 HOH *55(H2 O) HELIX 1 AA1 PRO A 36 GLY A 44 1 9 HELIX 2 AA2 ALA A 95 GLY A 111 1 17 HELIX 3 AA3 PRO B 36 GLY B 44 1 9 HELIX 4 AA4 TRP B 83 GLY B 87 1 5 HELIX 5 AA5 ALA B 95 GLY B 111 1 17 SHEET 1 AA1 4 GLU A 61 VAL A 63 0 SHEET 2 AA1 4 VAL A 72 LEU A 74 -1 O ALA A 73 N VAL A 62 SHEET 3 AA1 4 CYS A 46 THR A 52 -1 N PRO A 50 O LEU A 74 SHEET 4 AA1 4 LYS A 79 ILE A 81 -1 O ILE A 81 N CYS A 46 SHEET 1 AA2 6 GLU A 61 VAL A 63 0 SHEET 2 AA2 6 VAL A 72 LEU A 74 -1 O ALA A 73 N VAL A 62 SHEET 3 AA2 6 CYS A 46 THR A 52 -1 N PRO A 50 O LEU A 74 SHEET 4 AA2 6 ALA A 31 VAL A 33 -1 N VAL A 32 O VAL A 49 SHEET 5 AA2 6 ASP A 11 TRP A 14 -1 N ASP A 11 O VAL A 33 SHEET 6 AA2 6 THR A 89 THR A 93 -1 O GLY A 92 N LEU A 12 SHEET 1 AA3 4 GLU B 61 SER B 65 0 SHEET 2 AA3 4 ASP B 70 LEU B 74 -1 O GLY B 71 N LEU B 64 SHEET 3 AA3 4 MET B 45 THR B 52 -1 N PRO B 50 O LEU B 74 SHEET 4 AA3 4 LYS B 79 ALA B 82 -1 O LYS B 79 N CYS B 48 SHEET 1 AA4 6 GLU B 61 SER B 65 0 SHEET 2 AA4 6 ASP B 70 LEU B 74 -1 O GLY B 71 N LEU B 64 SHEET 3 AA4 6 MET B 45 THR B 52 -1 N PRO B 50 O LEU B 74 SHEET 4 AA4 6 PRO B 30 VAL B 33 -1 N PRO B 30 O CYS B 51 SHEET 5 AA4 6 ASP B 11 TRP B 14 -1 N ASP B 11 O VAL B 33 SHEET 6 AA4 6 THR B 89 THR B 93 -1 O GLY B 92 N LEU B 12 CISPEP 1 ILE B 110 GLY B 111 0 -29.09 SITE 1 AC1 5 VAL A 2 SER A 3 ARG A 4 HOH A 208 SITE 2 AC1 5 HOH B 304 SITE 1 AC2 10 VAL A 2 PRO B 30 CYS B 51 THR B 52 SITE 2 AC2 10 THR B 53 LEU B 64 GLY B 71 VAL B 72 SITE 3 AC2 10 LYS B 91 HOH B 317 CRYST1 62.654 62.654 217.741 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015961 0.009215 0.000000 0.00000 SCALE2 0.000000 0.018430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004593 0.00000