HEADER IMMUNE SYSTEM 15-JUL-15 5CKG TITLE HUMAN BETA-2 MICROGLOBULIN MUTANT V85E COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 21-119; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET29B KEYWDS AGGREGATION PROPENSITY, AMYLOID, BETA-SANDWITCH, FOLD STABILITY, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.M.SALA,M.DE ROSA,M.BOLOGNESI,S.RICAGNO REVDAT 2 10-JAN-24 5CKG 1 REMARK REVDAT 1 18-MAY-16 5CKG 0 JRNL AUTH C.CAMILLONI,B.M.SALA,P.SORMANNI,R.PORCARI,A.CORAZZA, JRNL AUTH 2 M.DE ROSA,S.ZANINI,A.BARBIROLI,G.ESPOSITO,M.BOLOGNESI, JRNL AUTH 3 V.BELLOTTI,M.VENDRUSCOLO,S.RICAGNO JRNL TITL RATIONAL DESIGN OF MUTATIONS THAT CHANGE THE AGGREGATION JRNL TITL 2 RATE OF A PROTEIN WHILE MAINTAINING ITS NATIVE STRUCTURE AND JRNL TITL 3 STABILITY. JRNL REF SCI REP V. 6 25559 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27150430 JRNL DOI 10.1038/SREP25559 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 20722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.630 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.7127 - 4.2131 0.96 1411 150 0.1643 0.1979 REMARK 3 2 4.2131 - 3.3459 0.96 1370 147 0.1538 0.2198 REMARK 3 3 3.3459 - 2.9235 0.97 1341 142 0.1809 0.2354 REMARK 3 4 2.9235 - 2.6564 0.97 1361 145 0.1985 0.2355 REMARK 3 5 2.6564 - 2.4662 0.97 1337 143 0.2057 0.2304 REMARK 3 6 2.4662 - 2.3208 0.98 1357 145 0.1989 0.2667 REMARK 3 7 2.3208 - 2.2047 0.94 1286 137 0.1978 0.2797 REMARK 3 8 2.2047 - 2.1087 0.97 1341 142 0.1911 0.2787 REMARK 3 9 2.1087 - 2.0276 0.97 1336 143 0.1962 0.2244 REMARK 3 10 2.0276 - 1.9576 0.97 1346 145 0.1944 0.2351 REMARK 3 11 1.9576 - 1.8964 0.95 1301 139 0.1956 0.2414 REMARK 3 12 1.8964 - 1.8422 0.94 1285 137 0.2150 0.2819 REMARK 3 13 1.8422 - 1.7937 0.97 1314 138 0.2468 0.2554 REMARK 3 14 1.7937 - 1.7500 0.96 1341 142 0.2792 0.3226 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 1825 REMARK 3 ANGLE : 1.789 2495 REMARK 3 CHIRALITY : 0.095 264 REMARK 3 PLANARITY : 0.009 328 REMARK 3 DIHEDRAL : 14.321 697 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8261 7.2752 0.2253 REMARK 3 T TENSOR REMARK 3 T11: 0.3370 T22: 0.2532 REMARK 3 T33: 0.2174 T12: 0.0381 REMARK 3 T13: 0.0428 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 6.0814 L22: 4.8299 REMARK 3 L33: 4.9578 L12: 4.0012 REMARK 3 L13: -5.0995 L23: -3.6658 REMARK 3 S TENSOR REMARK 3 S11: 0.1650 S12: 0.4150 S13: 0.1519 REMARK 3 S21: -0.1353 S22: 0.1636 S23: 0.0046 REMARK 3 S31: -0.3783 S32: -0.5392 S33: -0.3944 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8371 -2.5125 13.5967 REMARK 3 T TENSOR REMARK 3 T11: 0.2820 T22: 0.9004 REMARK 3 T33: 0.8162 T12: 0.0866 REMARK 3 T13: 0.2734 T23: 0.4344 REMARK 3 L TENSOR REMARK 3 L11: 7.3070 L22: 1.7610 REMARK 3 L33: 2.0223 L12: -1.1469 REMARK 3 L13: -3.8492 L23: -2.2594 REMARK 3 S TENSOR REMARK 3 S11: 0.5230 S12: -0.7219 S13: 0.4631 REMARK 3 S21: 0.5125 S22: 0.8309 S23: 1.9455 REMARK 3 S31: 1.5183 S32: -1.8381 S33: 0.4752 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6651 0.0410 3.8551 REMARK 3 T TENSOR REMARK 3 T11: 0.2413 T22: 0.2070 REMARK 3 T33: 0.1408 T12: -0.0301 REMARK 3 T13: 0.0099 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 6.5201 L22: 4.6644 REMARK 3 L33: 8.3999 L12: 2.4432 REMARK 3 L13: -6.1040 L23: -4.3703 REMARK 3 S TENSOR REMARK 3 S11: -0.2211 S12: 0.7602 S13: -0.0289 REMARK 3 S21: -0.1321 S22: 0.4524 S23: 0.1072 REMARK 3 S31: 0.2244 S32: -1.0477 S33: -0.2205 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9042 -5.1428 15.3734 REMARK 3 T TENSOR REMARK 3 T11: 0.4083 T22: 0.3359 REMARK 3 T33: 0.3114 T12: 0.0048 REMARK 3 T13: -0.0099 T23: 0.0591 REMARK 3 L TENSOR REMARK 3 L11: 8.2339 L22: 5.9545 REMARK 3 L33: 4.6333 L12: 1.7999 REMARK 3 L13: -5.3712 L23: -1.4790 REMARK 3 S TENSOR REMARK 3 S11: -0.2069 S12: -0.7004 S13: -0.9536 REMARK 3 S21: -0.0680 S22: -0.3003 S23: -0.1722 REMARK 3 S31: 1.2384 S32: 0.6819 S33: 0.3652 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3379 -2.4663 0.0144 REMARK 3 T TENSOR REMARK 3 T11: 0.3906 T22: 0.4553 REMARK 3 T33: 0.3056 T12: -0.0572 REMARK 3 T13: -0.0251 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 4.1828 L22: 6.8465 REMARK 3 L33: 5.4869 L12: 2.9061 REMARK 3 L13: -4.2253 L23: -5.0568 REMARK 3 S TENSOR REMARK 3 S11: -0.6248 S12: 1.1455 S13: -0.5086 REMARK 3 S21: -0.7810 S22: 0.5674 S23: -0.0012 REMARK 3 S31: 0.9857 S32: -1.5096 S33: 0.1250 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8196 1.2482 17.8662 REMARK 3 T TENSOR REMARK 3 T11: 0.3622 T22: 0.4676 REMARK 3 T33: 0.2703 T12: 0.1113 REMARK 3 T13: 0.0653 T23: 0.0520 REMARK 3 L TENSOR REMARK 3 L11: 7.5593 L22: 3.7284 REMARK 3 L33: 7.2542 L12: 1.4216 REMARK 3 L13: -5.1174 L23: -0.7486 REMARK 3 S TENSOR REMARK 3 S11: -0.2138 S12: -1.1234 S13: -0.0974 REMARK 3 S21: 0.4207 S22: 0.1072 S23: 0.3544 REMARK 3 S31: -0.3120 S32: -0.3395 S33: -0.0599 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3704 8.2474 8.4635 REMARK 3 T TENSOR REMARK 3 T11: 0.4557 T22: 0.2209 REMARK 3 T33: 0.2545 T12: -0.0687 REMARK 3 T13: 0.0762 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 8.6940 L22: 3.6699 REMARK 3 L33: 2.9786 L12: 4.5217 REMARK 3 L13: -2.2928 L23: -2.9994 REMARK 3 S TENSOR REMARK 3 S11: 0.2118 S12: -0.8019 S13: -0.1007 REMARK 3 S21: 0.8078 S22: -0.4647 S23: 0.2163 REMARK 3 S31: -0.3563 S32: 0.2507 S33: -0.0900 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1503 7.0623 14.4056 REMARK 3 T TENSOR REMARK 3 T11: 0.5088 T22: 0.4128 REMARK 3 T33: 0.4898 T12: 0.1177 REMARK 3 T13: 0.1078 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 4.5347 L22: 5.9403 REMARK 3 L33: 4.4092 L12: 4.2833 REMARK 3 L13: -4.1498 L23: -3.0101 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: 0.5767 S13: 2.5245 REMARK 3 S21: 0.5718 S22: 0.9125 S23: 1.4065 REMARK 3 S31: -1.2551 S32: -1.4709 S33: -0.4316 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5223 19.3515 -40.1714 REMARK 3 T TENSOR REMARK 3 T11: 0.1987 T22: 0.1215 REMARK 3 T33: 0.2179 T12: 0.0445 REMARK 3 T13: -0.0376 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 4.1598 L22: 3.2323 REMARK 3 L33: 6.1443 L12: 4.4203 REMARK 3 L13: -2.9761 L23: -2.5532 REMARK 3 S TENSOR REMARK 3 S11: 0.3745 S12: -0.1562 S13: 0.3016 REMARK 3 S21: 0.1000 S22: -0.1594 S23: 0.0683 REMARK 3 S31: -0.2856 S32: -0.0491 S33: -0.1245 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5659 11.1292 -29.6757 REMARK 3 T TENSOR REMARK 3 T11: 0.2213 T22: 0.6615 REMARK 3 T33: 0.3188 T12: -0.0125 REMARK 3 T13: 0.0121 T23: -0.0481 REMARK 3 L TENSOR REMARK 3 L11: 4.1488 L22: 8.8091 REMARK 3 L33: 6.7661 L12: -1.1527 REMARK 3 L13: -2.1084 L23: -2.0153 REMARK 3 S TENSOR REMARK 3 S11: 0.0968 S12: -0.8481 S13: 0.2412 REMARK 3 S21: 0.6161 S22: -0.0633 S23: 0.7257 REMARK 3 S31: -0.0087 S32: -0.8123 S33: -0.0592 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4233 12.3459 -38.1375 REMARK 3 T TENSOR REMARK 3 T11: 0.1756 T22: 0.2106 REMARK 3 T33: 0.1699 T12: -0.0164 REMARK 3 T13: -0.0490 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 9.6838 L22: 1.8911 REMARK 3 L33: 2.2436 L12: 1.4858 REMARK 3 L13: -2.8129 L23: -0.4016 REMARK 3 S TENSOR REMARK 3 S11: -0.0417 S12: -0.1936 S13: -0.2492 REMARK 3 S21: 0.1035 S22: -0.0018 S23: -0.1560 REMARK 3 S31: 0.0453 S32: -0.3198 S33: 0.0702 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 36 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1619 9.5737 -28.6991 REMARK 3 T TENSOR REMARK 3 T11: 0.2658 T22: 0.3803 REMARK 3 T33: 0.2287 T12: -0.0076 REMARK 3 T13: -0.0935 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 5.9700 L22: 3.0086 REMARK 3 L33: 3.1100 L12: 2.8984 REMARK 3 L13: -3.9222 L23: -2.9152 REMARK 3 S TENSOR REMARK 3 S11: 0.1337 S12: -0.9679 S13: 0.0028 REMARK 3 S21: 0.0575 S22: -0.0780 S23: -0.0127 REMARK 3 S31: 0.1789 S32: 0.0096 S33: -0.0107 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6415 4.0858 -26.0297 REMARK 3 T TENSOR REMARK 3 T11: 0.7528 T22: 0.5640 REMARK 3 T33: 0.5508 T12: -0.0166 REMARK 3 T13: 0.0629 T23: 0.0707 REMARK 3 L TENSOR REMARK 3 L11: 2.0630 L22: 8.4601 REMARK 3 L33: 3.3012 L12: -0.9624 REMARK 3 L13: -0.3083 L23: 4.6956 REMARK 3 S TENSOR REMARK 3 S11: -0.2447 S12: -1.0754 S13: -2.3197 REMARK 3 S21: -0.0051 S22: -0.3164 S23: 0.3355 REMARK 3 S31: 1.6695 S32: -0.1102 S33: 0.5172 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 51 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1399 11.1250 -48.0717 REMARK 3 T TENSOR REMARK 3 T11: 0.2634 T22: 0.2836 REMARK 3 T33: 0.1875 T12: -0.0254 REMARK 3 T13: -0.0498 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 8.8853 L22: 9.8595 REMARK 3 L33: 3.1392 L12: 4.7383 REMARK 3 L13: -4.4279 L23: -3.4033 REMARK 3 S TENSOR REMARK 3 S11: -0.4063 S12: 0.4568 S13: -0.1064 REMARK 3 S21: -0.8507 S22: 0.0301 S23: 0.1223 REMARK 3 S31: 0.2945 S32: -0.0208 S33: 0.3732 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 61 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8502 8.7582 -37.2922 REMARK 3 T TENSOR REMARK 3 T11: 0.1854 T22: 0.2602 REMARK 3 T33: 0.1838 T12: -0.0464 REMARK 3 T13: -0.0282 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 7.1887 L22: 3.7163 REMARK 3 L33: 4.1464 L12: 3.0919 REMARK 3 L13: -5.1090 L23: -2.5509 REMARK 3 S TENSOR REMARK 3 S11: -0.2367 S12: 0.3407 S13: -0.1939 REMARK 3 S21: 0.0780 S22: 0.1343 S23: 0.2268 REMARK 3 S31: 0.1769 S32: -0.7295 S33: 0.1196 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6377 12.2889 -19.3094 REMARK 3 T TENSOR REMARK 3 T11: 0.5343 T22: 0.7802 REMARK 3 T33: 0.3977 T12: 0.0614 REMARK 3 T13: -0.0177 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 4.2088 L22: 5.4649 REMARK 3 L33: 8.5243 L12: -1.4438 REMARK 3 L13: -4.9982 L23: -1.8328 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: -1.4629 S13: 1.4657 REMARK 3 S21: 0.6761 S22: -0.0521 S23: 0.0394 REMARK 3 S31: -0.7692 S32: -0.4637 S33: -0.0727 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.6828 16.6382 -30.8694 REMARK 3 T TENSOR REMARK 3 T11: 0.2396 T22: 0.2557 REMARK 3 T33: 0.2425 T12: -0.0507 REMARK 3 T13: -0.0827 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 5.1988 L22: 1.0771 REMARK 3 L33: 5.8270 L12: 1.9272 REMARK 3 L13: -2.0314 L23: -0.9894 REMARK 3 S TENSOR REMARK 3 S11: 0.3172 S12: -0.7160 S13: 0.1386 REMARK 3 S21: 0.2955 S22: -0.2803 S23: -0.2047 REMARK 3 S31: -0.6957 S32: 0.5655 S33: 0.0178 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2791 18.9832 -27.5458 REMARK 3 T TENSOR REMARK 3 T11: 0.3575 T22: 0.3924 REMARK 3 T33: 0.3909 T12: 0.0865 REMARK 3 T13: -0.0090 T23: -0.1542 REMARK 3 L TENSOR REMARK 3 L11: 2.8044 L22: 7.5454 REMARK 3 L33: 8.3563 L12: 4.5612 REMARK 3 L13: -1.7686 L23: -1.5665 REMARK 3 S TENSOR REMARK 3 S11: 0.3727 S12: -0.7559 S13: 2.4337 REMARK 3 S21: 0.5885 S22: -0.1686 S23: 1.0270 REMARK 3 S31: -1.1201 S32: -0.9227 S33: -0.0078 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CKG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20777 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 27.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2Z9T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 30% W/V PEG REMARK 280 4000, 15% GLYCEROL, 0.2 M AMMONIUM ACETATE, PH 5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.28900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 14.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.28900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 14.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 269 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 MET A 99 CG SD CE REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 GLU B 50 CG CD OE1 OE2 REMARK 470 ASP B 98 CG OD1 OD2 REMARK 470 MET B 99 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 226 O HOH A 230 2.02 REMARK 500 O HOH B 265 O HOH B 274 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 223 O HOH B 252 4554 2.03 REMARK 500 O HOH B 257 O HOH B 257 2554 2.11 REMARK 500 O HOH B 261 O HOH B 272 4544 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 80 CB CYS A 80 SG 0.140 REMARK 500 CYS B 80 CB CYS B 80 SG 0.172 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 80 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 32 -169.12 -77.23 REMARK 500 LYS A 48 120.40 -39.81 REMARK 500 VAL A 49 133.68 1.39 REMARK 500 TRP A 60 69.05 77.00 REMARK 500 PRO B 32 -173.56 -67.82 REMARK 500 TRP B 60 66.75 70.72 REMARK 500 ASP B 98 46.26 -97.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 102 DBREF 5CKG A 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 5CKG B 1 99 UNP P61769 B2MG_HUMAN 21 119 SEQADV 5CKG MET A 0 UNP P61769 INITIATING METHIONINE SEQADV 5CKG GLU A 85 UNP P61769 VAL 105 ENGINEERED MUTATION SEQADV 5CKG MET B 0 UNP P61769 INITIATING METHIONINE SEQADV 5CKG GLU B 85 UNP P61769 VAL 105 ENGINEERED MUTATION SEQRES 1 A 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 A 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 A 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 A 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 A 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 A 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 A 100 TYR ALA CYS ARG VAL ASN HIS GLU THR LEU SER GLN PRO SEQRES 8 A 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS GLU THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET HET ACT A 101 4 HET ACT B 101 4 HET GOL B 102 6 HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *120(H2 O) SHEET 1 AA1 4 LYS A 6 SER A 11 0 SHEET 2 AA1 4 ASN A 21 PHE A 30 -1 O SER A 28 N LYS A 6 SHEET 3 AA1 4 SER A 61 PHE A 70 -1 O TYR A 66 N CYS A 25 SHEET 4 AA1 4 HIS A 51 SER A 57 -1 N SER A 57 O SER A 61 SHEET 1 AA2 4 GLU A 44 ARG A 45 0 SHEET 2 AA2 4 GLU A 36 LYS A 41 -1 N LYS A 41 O GLU A 44 SHEET 3 AA2 4 TYR A 78 ASN A 83 -1 O ARG A 81 N ASP A 38 SHEET 4 AA2 4 LYS A 91 LYS A 94 -1 O VAL A 93 N CYS A 80 SHEET 1 AA3 4 LYS B 6 SER B 11 0 SHEET 2 AA3 4 ASN B 21 PHE B 30 -1 O TYR B 26 N GLN B 8 SHEET 3 AA3 4 SER B 61 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 AA3 4 HIS B 51 SER B 57 -1 N ASP B 53 O LEU B 65 SHEET 1 AA4 4 GLU B 44 ARG B 45 0 SHEET 2 AA4 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA4 4 TYR B 78 ASN B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 AA4 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SSBOND 1 CYS A 25 CYS A 80 1555 1555 2.07 SSBOND 2 CYS B 25 CYS B 80 1555 1555 2.06 CISPEP 1 HIS A 31 PRO A 32 0 -0.08 CISPEP 2 HIS B 31 PRO B 32 0 -4.75 SITE 1 AC1 1 GLN A 8 SITE 1 AC2 2 TYR B 10 ARG B 12 SITE 1 AC3 4 GLU B 36 ASN B 83 HIS B 84 GLU B 85 CRYST1 88.578 28.860 87.719 90.00 110.11 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011289 0.000000 0.004134 0.00000 SCALE2 0.000000 0.034650 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012140 0.00000