HEADER TRANSFERASE 15-JUL-15 5CKL TITLE FIC PROTEIN FROM NEISSERIA MENINGITIDIS (NMFIC) MUTANT E156R IN TITLE 2 DIMERIC FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE NMFIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMPYLATOR NMFIC; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS SEROGROUP B (STRAIN SOURCE 3 MC58); SOURCE 4 ORGANISM_TAXID: 122586; SOURCE 5 GENE: NMB0255; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSFDUET1 KEYWDS FIC PROTEIN, AMP-TRANSFERASE, DIMER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.V.STANGER,T.SCHIRMER REVDAT 4 10-JAN-24 5CKL 1 REMARK REVDAT 3 10-FEB-16 5CKL 1 JRNL REVDAT 2 03-FEB-16 5CKL 1 JRNL REVDAT 1 27-JAN-16 5CKL 0 JRNL AUTH F.V.STANGER,B.M.BURMANN,A.HARMS,H.ARAGAO,A.MAZUR,T.SHARPE, JRNL AUTH 2 C.DEHIO,S.HILLER,T.SCHIRMER JRNL TITL INTRINSIC REGULATION OF FIC-DOMAIN AMP-TRANSFERASES BY JRNL TITL 2 OLIGOMERIZATION AND AUTOMODIFICATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E529 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 26787847 JRNL DOI 10.1073/PNAS.1516930113 REMARK 2 REMARK 2 RESOLUTION. 0.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 123331 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.113 REMARK 3 R VALUE (WORKING SET) : 0.112 REMARK 3 FREE R VALUE : 0.125 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6534 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8771 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 500 REMARK 3 BIN FREE R VALUE : 0.2000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1498 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 355 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.016 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.016 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.009 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.382 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.978 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1717 ; 0.029 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1626 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2332 ; 2.200 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3736 ; 1.111 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 217 ; 5.225 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;34.806 ;23.814 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 321 ;11.918 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.745 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 237 ; 0.156 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2064 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 447 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 817 ; 1.899 ; 0.856 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 816 ; 1.558 ; 0.851 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1051 ; 2.099 ; 1.286 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3342 ; 7.738 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 13 ;36.905 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3648 ;13.638 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5CKL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 129938 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.990 REMARK 200 RESOLUTION RANGE LOW (A) : 65.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.61100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3S6A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM TRIS PH 7.8, 100 MM NACL, BATCH REMARK 280 MODE, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.26900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.06800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.26900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.06800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 151.61400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 203 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 541 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 581 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 GLY A 191 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 130 CE NZ REMARK 480 LEU A 155 CD2 REMARK 480 LYS A 162 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 553 O HOH A 577 1.70 REMARK 500 O HOH A 435 O HOH A 495 1.76 REMARK 500 O HOH A 445 O HOH A 604 1.82 REMARK 500 O HOH A 492 O HOH A 590 1.92 REMARK 500 O HOH A 433 O HOH A 608 2.01 REMARK 500 NZ LYS A 84 O HOH A 301 2.06 REMARK 500 NZ LYS A 162 O HOH A 302 2.07 REMARK 500 O HOH A 398 O HOH A 546 2.09 REMARK 500 O HOH A 437 O HOH A 554 2.12 REMARK 500 O HOH A 346 O HOH A 569 2.12 REMARK 500 O HOH A 320 O HOH A 514 2.14 REMARK 500 O HOH A 392 O HOH A 599 2.15 REMARK 500 NH2 ARG A 47 O HOH A 304 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 570 O HOH A 570 2575 1.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 24 CZ ARG A 24 NH1 0.098 REMARK 500 ARG A 33 C ILE A 34 N -0.139 REMARK 500 ARG A 47 CZ ARG A 47 NH1 0.134 REMARK 500 TYR A 48 CB TYR A 48 CG -0.124 REMARK 500 ARG A 71 CZ ARG A 71 NH1 -0.098 REMARK 500 ARG A 91 CZ ARG A 91 NH2 0.087 REMARK 500 GLU A 94 CG GLU A 94 CD 0.101 REMARK 500 GLU A 94 CD GLU A 94 OE1 0.080 REMARK 500 GLU A 95 CD GLU A 95 OE1 -0.106 REMARK 500 SER A 139 CB SER A 139 OG -0.092 REMARK 500 GLN A 145 CD GLN A 145 NE2 0.466 REMARK 500 ARG A 156 CD ARG A 156 NE -0.103 REMARK 500 ASP A 167 CB ASP A 167 CG -0.185 REMARK 500 GLU A 173 CG GLU A 173 CD 0.099 REMARK 500 GLU A 173 CD GLU A 173 OE2 -0.094 REMARK 500 GLU A 180 CB GLU A 180 CG -0.115 REMARK 500 GLU A 180 CG GLU A 180 CD 0.187 REMARK 500 GLU A 189 CG GLU A 189 CD 0.106 REMARK 500 GLU A 189 CD GLU A 189 OE1 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 24 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ASP A 32 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 47 CD - NE - CZ ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG A 47 NH1 - CZ - NH2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 47 NE - CZ - NH2 ANGL. DEV. = -10.4 DEGREES REMARK 500 ARG A 47 NE - CZ - NH2 ANGL. DEV. = -9.9 DEGREES REMARK 500 LEU A 49 CB - CG - CD2 ANGL. DEV. = 15.4 DEGREES REMARK 500 ASP A 55 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 GLY A 68 CA - C - O ANGL. DEV. = 10.9 DEGREES REMARK 500 PHE A 70 CB - CG - CD2 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 71 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 91 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 91 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 91 NE - CZ - NH2 ANGL. DEV. = 5.3 DEGREES REMARK 500 GLU A 94 OE1 - CD - OE2 ANGL. DEV. = -10.1 DEGREES REMARK 500 GLU A 94 CG - CD - OE2 ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 155 CB - CG - CD1 ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG A 156 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 158 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 158 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 TYR A 184 CB - CG - CD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 TYR A 184 CB - CG - CD1 ANGL. DEV. = 5.2 DEGREES REMARK 500 GLU A 189 OE1 - CD - OE2 ANGL. DEV. = 13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 33 -10.77 REMARK 500 GLY A 69 -11.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 650 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A 651 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 652 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 653 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 654 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A 655 DISTANCE = 6.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 DBREF 5CKL A 11 191 UNP Q7DDR9 NMFIC_NEIMB 11 191 SEQADV 5CKL MET A 4 UNP Q7DDR9 INITIATING METHIONINE SEQADV 5CKL HIS A 5 UNP Q7DDR9 EXPRESSION TAG SEQADV 5CKL HIS A 6 UNP Q7DDR9 EXPRESSION TAG SEQADV 5CKL HIS A 7 UNP Q7DDR9 EXPRESSION TAG SEQADV 5CKL HIS A 8 UNP Q7DDR9 EXPRESSION TAG SEQADV 5CKL HIS A 9 UNP Q7DDR9 EXPRESSION TAG SEQADV 5CKL HIS A 10 UNP Q7DDR9 EXPRESSION TAG SEQADV 5CKL ARG A 156 UNP Q7DDR9 GLU 156 ENGINEERED MUTATION SEQRES 1 A 188 MET HIS HIS HIS HIS HIS HIS MET LYS SER ILE ASP GLU SEQRES 2 A 188 GLN SER LEU HIS ASN ALA ARG ARG LEU PHE GLU SER GLY SEQRES 3 A 188 ASP ILE ASP ARG ILE GLU VAL GLY THR THR ALA GLY LEU SEQRES 4 A 188 GLN GLN ILE HIS ARG TYR LEU PHE GLY GLY LEU TYR ASP SEQRES 5 A 188 PHE ALA GLY GLN ILE ARG GLU ASP ASN ILE SER LYS GLY SEQRES 6 A 188 GLY PHE ARG PHE ALA ASN ALA MET TYR LEU LYS GLU ALA SEQRES 7 A 188 LEU VAL LYS ILE GLU GLN MET PRO GLU ARG THR PHE GLU SEQRES 8 A 188 GLU ILE ILE ALA LYS TYR VAL GLU MET ASN ILE ALA HIS SEQRES 9 A 188 PRO PHE LEU GLU GLY ASN GLY ARG SER THR ARG ILE TRP SEQRES 10 A 188 LEU ASP LEU VAL LEU LYS LYS ASN LEU LYS LYS VAL VAL SEQRES 11 A 188 ASN TRP GLN ASN VAL SER LYS THR LEU TYR LEU GLN ALA SEQRES 12 A 188 MET GLU ARG SER PRO VAL ASN ASP LEU ARG LEU ARG PHE SEQRES 13 A 188 LEU LEU LYS ASP ASN LEU THR ASP ASP VAL ASP ASN ARG SEQRES 14 A 188 GLU ILE ILE PHE LYS GLY ILE GLU GLN SER TYR TYR TYR SEQRES 15 A 188 GLU GLY TYR GLU LYS GLY HET GOL A 201 6 HET CL A 202 1 HET CL A 203 1 HET CL A 204 1 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 CL 3(CL 1-) FORMUL 6 HOH *355(H2 O) HELIX 1 AA1 SER A 13 SER A 28 1 16 HELIX 2 AA2 GLY A 29 ILE A 34 5 6 HELIX 3 AA3 THR A 38 GLY A 51 1 14 HELIX 4 AA4 ASN A 74 GLN A 87 1 14 HELIX 5 AA5 THR A 92 HIS A 107 1 16 HELIX 6 AA6 GLY A 112 LYS A 130 1 19 HELIX 7 AA7 TRP A 135 VAL A 138 5 4 HELIX 8 AA8 SER A 139 SER A 150 1 12 HELIX 9 AA9 ASP A 154 ASP A 163 1 10 HELIX 10 AB1 ASN A 171 GLU A 186 1 16 SHEET 1 AA1 2 SER A 66 LYS A 67 0 SHEET 2 AA1 2 PHE A 70 ARG A 71 -1 O PHE A 70 N LYS A 67 SHEET 1 AA2 2 VAL A 132 VAL A 133 0 SHEET 2 AA2 2 LEU A 165 THR A 166 -1 O THR A 166 N VAL A 132 SITE 1 AC1 6 ASN A 104 HIS A 107 ARG A 118 GLU A 186 SITE 2 AC1 6 HOH A 355 HOH A 430 SITE 1 AC2 2 HOH A 574 HOH A 632 SITE 1 AC3 2 HOH A 372 HOH A 428 SITE 1 AC4 5 GLY A 112 ASN A 113 GLY A 114 ARG A 115 SITE 2 AC4 5 GLU A 186 CRYST1 35.333 50.538 130.136 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028302 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007684 0.00000