HEADER HYDROLASE 15-JUL-15 5CKQ TITLE CUB1-EGF-CUB2 DOMAINS OF RAT MASP-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNAN-BINDING LECTIN SERINE PROTEASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: COMPLEMENT FACTOR MASP-3,COMPLEMENT-ACTIVATING COMPONENT OF COMPND 5 RA-REACTIVE FACTOR,MANNOSE-BINDING LECTIN-ASSOCIATED SERINE PROTEASE COMPND 6 1,MASP-1,MANNOSE-BINDING PROTEIN-ASSOCIATED SERINE PROTEASE,RA- COMPND 7 REACTIVE FACTOR SERINE PROTEASE P100,RARF,SERINE PROTEASE 5; COMPND 8 EC: 3.4.21.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 TISSUE: LIVER; SOURCE 6 GENE: MASP1, CRARF, MASP3; SOURCE 7 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: DXB11; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PED KEYWDS CUB1-EGF-CUB2, SERINE PROTEASE, LECTIN PATHWAY, COMPLEMENT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.NAN,C.M.FURZE,D.W.WRIGHT,J.GOR,R.WALLIS,S.J.PERKINS REVDAT 6 10-JAN-24 5CKQ 1 HETSYN REVDAT 5 29-JUL-20 5CKQ 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 13-SEP-17 5CKQ 1 REMARK REVDAT 3 15-FEB-17 5CKQ 1 JRNL REVDAT 2 01-FEB-17 5CKQ 1 JRNL REVDAT 1 18-JAN-17 5CKQ 0 JRNL AUTH R.NAN,C.M.FURZE,D.W.WRIGHT,J.GOR,R.WALLIS,S.J.PERKINS JRNL TITL FLEXIBILITY IN MANNAN-BINDING LECTIN-ASSOCIATED SERINE JRNL TITL 2 PROTEASES-1 AND -2 PROVIDES INSIGHT ON LECTIN PATHWAY JRNL TITL 3 ACTIVATION. JRNL REF STRUCTURE V. 25 364 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28111019 JRNL DOI 10.1016/J.STR.2016.12.014 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 6461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.660 REMARK 3 FREE R VALUE TEST SET COUNT : 301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 76.3712 - 4.6663 1.00 3125 154 0.2352 0.2758 REMARK 3 2 4.6663 - 3.7038 1.00 3035 147 0.2922 0.3640 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 187.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2340 REMARK 3 ANGLE : 0.751 3175 REMARK 3 CHIRALITY : 0.029 331 REMARK 3 PLANARITY : 0.003 421 REMARK 3 DIHEDRAL : 10.605 846 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 146.5180 101.6170 128.3244 REMARK 3 T TENSOR REMARK 3 T11: 1.2359 T22: 1.0487 REMARK 3 T33: 1.1783 T12: -0.2495 REMARK 3 T13: 0.1381 T23: -0.1147 REMARK 3 L TENSOR REMARK 3 L11: 7.9799 L22: 3.8308 REMARK 3 L33: 2.5479 L12: -1.2869 REMARK 3 L13: 2.5319 L23: -0.9994 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: 0.4180 S13: -0.0101 REMARK 3 S21: -0.7064 S22: 0.1158 S23: -0.0678 REMARK 3 S31: 0.0903 S32: 0.1957 S33: -0.1144 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 168.2786 102.4126 154.8791 REMARK 3 T TENSOR REMARK 3 T11: 1.0512 T22: 1.5690 REMARK 3 T33: 1.3515 T12: 0.0831 REMARK 3 T13: 0.0311 T23: 0.1052 REMARK 3 L TENSOR REMARK 3 L11: 8.6537 L22: 0.5345 REMARK 3 L33: 7.5915 L12: -2.3348 REMARK 3 L13: 8.1521 L23: -2.5214 REMARK 3 S TENSOR REMARK 3 S11: 0.4973 S12: 0.1905 S13: -1.1906 REMARK 3 S21: 0.2273 S22: 0.3080 S23: -0.0237 REMARK 3 S31: 0.4964 S32: 0.4420 S33: -0.8335 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 169 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 199.3349 98.4928 164.5930 REMARK 3 T TENSOR REMARK 3 T11: 1.5363 T22: 1.1577 REMARK 3 T33: 2.1174 T12: 0.1877 REMARK 3 T13: 0.0502 T23: 0.2188 REMARK 3 L TENSOR REMARK 3 L11: 6.5374 L22: 2.7522 REMARK 3 L33: 3.5963 L12: 1.3894 REMARK 3 L13: -0.9040 L23: 2.0322 REMARK 3 S TENSOR REMARK 3 S11: -0.2386 S12: 0.2036 S13: 0.0857 REMARK 3 S21: 0.8084 S22: 0.0325 S23: -0.8496 REMARK 3 S31: 0.7426 S32: -0.1427 S33: 0.2247 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211799. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6473 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.700 REMARK 200 RESOLUTION RANGE LOW (A) : 76.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.74200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DEM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM IMIDAZOLE/MOPS PH 6.5 REMARK 280 CONTAINING 20% ETHYLENE GLYCOL AND 10% PEG8K, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 76.35500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 76.35500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 76.35500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 76.35500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 76.35500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 76.35500 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 76.35500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 76.35500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 76.35500 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 76.35500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 76.35500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 76.35500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 76.35500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 76.35500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 76.35500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 76.35500 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 76.35500 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 76.35500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 76.35500 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 76.35500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 76.35500 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 76.35500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 76.35500 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 76.35500 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 76.35500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 76.35500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 76.35500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 76.35500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 76.35500 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 76.35500 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 76.35500 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 76.35500 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 76.35500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 76.35500 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 76.35500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 76.35500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 305.42000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 305.42000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 24 O PHE A 103 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 7 -75.52 -124.12 REMARK 500 GLU A 8 -145.95 50.47 REMARK 500 TYR A 56 -74.77 -80.89 REMARK 500 PHE A 103 -66.45 -131.82 REMARK 500 GLU A 126 -14.20 76.26 REMARK 500 ARG A 127 -114.11 55.43 REMARK 500 HIS A 136 -75.45 -102.57 REMARK 500 ASN A 159 -2.04 68.35 REMARK 500 ARG A 160 -65.75 -109.07 REMARK 500 ASP A 211 -139.35 51.27 REMARK 500 PRO A 222 88.87 -68.60 REMARK 500 CYS A 223 66.22 64.47 REMARK 500 TYR A 225 -73.81 -81.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 49 OE1 REMARK 620 2 ASP A 57 OD1 75.4 REMARK 620 3 ASP A 57 OD2 68.0 43.9 REMARK 620 4 ASP A 102 OD1 106.3 59.8 102.9 REMARK 620 5 SER A 104 O 88.3 153.4 146.3 106.6 REMARK 620 6 ASN A 105 OD1 94.1 111.1 68.6 153.4 90.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD1 REMARK 620 2 VAL A 121 O 81.1 REMARK 620 3 GLU A 123 OE1 144.7 63.7 REMARK 620 4 ASN A 140 OD1 111.1 73.0 59.7 REMARK 620 5 TYR A 141 O 81.8 130.9 120.5 71.2 REMARK 620 6 GLY A 144 O 138.7 137.0 75.2 76.0 61.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 180 OG REMARK 620 2 PRO A 181 O 101.0 REMARK 620 3 ASN A 185 O 150.5 106.9 REMARK 620 4 ARG A 269 O 89.4 167.2 64.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 187 OH REMARK 620 2 GLU A 216 OE1 114.5 REMARK 620 3 ASP A 226 OD2 51.2 98.1 REMARK 620 4 ASP A 263 OD1 132.3 72.5 81.4 REMARK 620 5 SER A 265 O 155.6 84.4 145.4 66.3 REMARK 620 N 1 2 3 4 DBREF 5CKQ A 2 277 UNP Q8CHN8 MASP1_RAT 25 301 SEQADV 5CKQ A UNP Q8CHN8 GLY 60 DELETION SEQADV 5CKQ HIS A 208 UNP Q8CHN8 GLN 232 CONFLICT SEQRES 1 A 276 HIS THR VAL GLU LEU ASN GLU MET PHE GLY GLN ILE GLN SEQRES 2 A 276 SER PRO GLY TYR PRO ASP SER TYR PRO SER ASP SER GLU SEQRES 3 A 276 VAL THR TRP ASN ILE THR VAL PRO GLU PHE ARG VAL GLN SEQRES 4 A 276 LEU TYR PHE MET HIS PHE ASN LEU GLU SER SER TYR LEU SEQRES 5 A 276 CYS GLU TYR ASP TYR VAL LYS VAL GLU THR GLU ASP GLN SEQRES 6 A 276 VAL LEU ALA THR PHE CYS GLY ARG GLU THR THR ASP THR SEQRES 7 A 276 GLU GLN THR PRO GLY GLN GLU VAL VAL LEU SER PRO GLY SEQRES 8 A 276 SER PHE MET SER VAL THR PHE ARG SER ASP PHE SER ASN SEQRES 9 A 276 GLU GLU ARG PHE THR GLY PHE ASP ALA HIS TYR MET ALA SEQRES 10 A 276 VAL ASP VAL ASP GLU CYS LYS GLU ARG GLU ASP GLU GLU SEQRES 11 A 276 LEU SER CYS ASP HIS TYR CYS HIS ASN TYR ILE GLY GLY SEQRES 12 A 276 TYR TYR CYS SER CYS ARG PHE GLY TYR ILE LEU HIS THR SEQRES 13 A 276 ASP ASN ARG THR CYS ARG VAL GLU CYS SER GLY ASN LEU SEQRES 14 A 276 PHE THR GLN ARG THR GLY THR ILE THR SER PRO ASP TYR SEQRES 15 A 276 PRO ASN PRO TYR PRO LYS SER SER GLU CYS SER TYR THR SEQRES 16 A 276 ILE ASP LEU GLU GLU GLY PHE MET VAL THR LEU HIS PHE SEQRES 17 A 276 GLU ASP ILE PHE ASP ILE GLU ASP HIS PRO GLU VAL PRO SEQRES 18 A 276 CYS PRO TYR ASP TYR ILE LYS ILE LYS ALA GLY SER LYS SEQRES 19 A 276 VAL TRP GLY PRO PHE CYS GLY GLU LYS SER PRO GLU PRO SEQRES 20 A 276 ILE SER THR GLN SER HIS SER ILE GLN ILE LEU PHE ARG SEQRES 21 A 276 SER ASP ASN SER GLY GLU ASN ARG GLY TRP ARG LEU SER SEQRES 22 A 276 TYR ARG ALA HET NAG A 301 14 HET NAG A 302 14 HET CA A 303 1 HET CA A 304 1 HET CA A 305 1 HET NA A 306 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 4 CA 3(CA 2+) FORMUL 7 NA NA 1+ HELIX 1 AA1 SER A 51 GLU A 55 5 5 SHEET 1 AA1 5 THR A 3 LEU A 6 0 SHEET 2 AA1 5 GLU A 27 THR A 33 1 O THR A 29 N VAL A 4 SHEET 3 AA1 5 PHE A 94 SER A 101 -1 O PHE A 99 N VAL A 28 SHEET 4 AA1 5 ASP A 57 GLU A 62 -1 N GLU A 62 O SER A 96 SHEET 5 AA1 5 VAL A 67 PHE A 71 -1 O PHE A 71 N VAL A 59 SHEET 1 AA2 4 PHE A 10 GLN A 14 0 SHEET 2 AA2 4 GLY A 111 ASP A 120 -1 O ALA A 114 N ILE A 13 SHEET 3 AA2 4 PHE A 37 ASN A 47 -1 N HIS A 45 O ASP A 113 SHEET 4 AA2 4 VAL A 88 LEU A 89 -1 O VAL A 88 N LEU A 41 SHEET 1 AA3 2 TYR A 137 TYR A 141 0 SHEET 2 AA3 2 GLY A 144 SER A 148 -1 O SER A 148 N TYR A 137 SHEET 1 AA4 2 ILE A 154 LEU A 155 0 SHEET 2 AA4 2 CYS A 162 ARG A 163 -1 O ARG A 163 N ILE A 154 SHEET 1 AA5 5 ASN A 169 PHE A 171 0 SHEET 2 AA5 5 SER A 191 ASP A 198 1 O THR A 196 N PHE A 171 SHEET 3 AA5 5 SER A 255 SER A 262 -1 O ILE A 256 N ILE A 197 SHEET 4 AA5 5 TYR A 227 ALA A 232 -1 N LYS A 231 O GLN A 257 SHEET 5 AA5 5 LYS A 235 PHE A 240 -1 O TRP A 237 N ILE A 230 SHEET 1 AA6 4 GLY A 176 THR A 179 0 SHEET 2 AA6 4 ARG A 272 ARG A 276 -1 O LEU A 273 N ILE A 178 SHEET 3 AA6 4 VAL A 205 PHE A 209 -1 N THR A 206 O ARG A 276 SHEET 4 AA6 4 ILE A 249 THR A 251 -1 O THR A 251 N VAL A 205 SSBOND 1 CYS A 54 CYS A 72 1555 1555 2.03 SSBOND 2 CYS A 124 CYS A 138 1555 1555 2.03 SSBOND 3 CYS A 134 CYS A 147 1555 1555 2.03 SSBOND 4 CYS A 149 CYS A 162 1555 1555 2.03 SSBOND 5 CYS A 166 CYS A 193 1555 1555 2.03 SSBOND 6 CYS A 223 CYS A 241 1555 1555 2.03 LINK ND2 ASN A 31 C1 NAG A 301 1555 1555 1.44 LINK ND2 ASN A 159 C1 NAG A 302 1555 1555 1.44 LINK OE1 GLU A 49 CA CA A 305 1555 1555 2.59 LINK OD1 ASP A 57 CA CA A 305 1555 1555 2.82 LINK OD2 ASP A 57 CA CA A 305 1555 1555 3.02 LINK OD1 ASP A 102 CA CA A 305 1555 1555 2.59 LINK O SER A 104 CA CA A 305 1555 1555 2.63 LINK OD1 ASN A 105 CA CA A 305 1555 1555 2.75 LINK OD1 ASP A 120 CA CA A 304 1555 1555 2.40 LINK O VAL A 121 CA CA A 304 1555 1555 2.63 LINK OE1 GLU A 123 CA CA A 304 1555 1555 2.97 LINK OD1 ASN A 140 CA CA A 304 1555 1555 2.58 LINK O TYR A 141 CA CA A 304 1555 1555 2.67 LINK O GLY A 144 CA CA A 304 1555 1555 2.74 LINK OG SER A 180 NA NA A 306 1555 1555 2.69 LINK O PRO A 181 NA NA A 306 1555 1555 2.72 LINK O ASN A 185 NA NA A 306 1555 1555 2.56 LINK OH TYR A 187 CA CA A 303 1555 1555 3.07 LINK OE1 GLU A 216 CA CA A 303 1555 1555 2.94 LINK OD2 ASP A 226 CA CA A 303 1555 1555 2.40 LINK OD1 ASP A 263 CA CA A 303 1555 1555 2.83 LINK O SER A 265 CA CA A 303 1555 1555 2.38 LINK O ARG A 269 NA NA A 306 1555 1555 2.97 CISPEP 1 TYR A 18 PRO A 19 0 3.96 CISPEP 2 TYR A 183 PRO A 184 0 -2.98 CISPEP 3 GLY A 238 PRO A 239 0 -2.77 CRYST1 152.710 152.710 152.710 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006548 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006548 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006548 0.00000