data_5CKR # _entry.id 5CKR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5CKR WWPDB D_1000211243 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5CKR _pdbx_database_status.recvd_initial_deposition_date 2015-07-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lee, S.Y.' 1 'Chung, B.C.' 2 'Mashalidis, E.H.' 3 'Tanino, T.' 4 'Kim, M.' 5 'Hong, J.' 6 'Ichikawa, S.' 7 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 533 _citation.language ? _citation.page_first 557 _citation.page_last 560 _citation.title 'Structural insights into inhibition of lipid I production in bacterial cell wall synthesis.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nature17636 _citation.pdbx_database_id_PubMed 27088606 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chung, B.C.' 1 ? primary 'Mashalidis, E.H.' 2 ? primary 'Tanino, T.' 3 ? primary 'Kim, M.' 4 ? primary 'Matsuda, A.' 5 ? primary 'Hong, J.' 6 ? primary 'Ichikawa, S.' 7 ? primary 'Lee, S.Y.' 8 ? # _cell.entry_id 5CKR _cell.length_a 94.480 _cell.length_b 102.050 _cell.length_c 135.800 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CKR _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Phospho-N-acetylmuramoyl-pentapeptide-transferase 40954.684 1 2.7.8.13 ? ? ? 2 non-polymer syn 'Muraymycin D2' 915.944 1 ? ? ? ? 3 water nat water 18.015 9 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'UDP-MurNAc-pentapeptide phosphotransferase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPAVPRMLYQLALLLKDYWFAFNVLKYITFRSFTAVLIAFFLTLVLSPSFINRLRKIQRLFGGYVREYTPESHEVKKYTP TMGGIVILIVVTLSTLLLMRWDIKYTWVVLLSFLSFGTIGFWDDYVKLKNKKGISIKTKFLLQVLSASLISVLIYYWADI DTILYFPFFKELYVDLGVLYLPFAVFVIVGSANAVNLTDGLDGLAIGPAMTTATALGVVAYAVGHSKIAQYLNIPYVPYA GELTVFCFALVGAGLGFLWFNSFPAQMFMGDVGSLSIGASLATVALLTKSEFIFAVAAGVFVFETISVILQIIYFRWTGG KRLFKRAPFHHHLELNGLPEPKIVVRMWIISILLAIIAISMLKLR ; _entity_poly.pdbx_seq_one_letter_code_can ;GPAVPRMLYQLALLLKDYWFAFNVLKYITFRSFTAVLIAFFLTLVLSPSFINRLRKIQRLFGGYVREYTPESHEVKKYTP TMGGIVILIVVTLSTLLLMRWDIKYTWVVLLSFLSFGTIGFWDDYVKLKNKKGISIKTKFLLQVLSASLISVLIYYWADI DTILYFPFFKELYVDLGVLYLPFAVFVIVGSANAVNLTDGLDGLAIGPAMTTATALGVVAYAVGHSKIAQYLNIPYVPYA GELTVFCFALVGAGLGFLWFNSFPAQMFMGDVGSLSIGASLATVALLTKSEFIFAVAAGVFVFETISVILQIIYFRWTGG KRLFKRAPFHHHLELNGLPEPKIVVRMWIISILLAIIAISMLKLR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 ALA n 1 4 VAL n 1 5 PRO n 1 6 ARG n 1 7 MET n 1 8 LEU n 1 9 TYR n 1 10 GLN n 1 11 LEU n 1 12 ALA n 1 13 LEU n 1 14 LEU n 1 15 LEU n 1 16 LYS n 1 17 ASP n 1 18 TYR n 1 19 TRP n 1 20 PHE n 1 21 ALA n 1 22 PHE n 1 23 ASN n 1 24 VAL n 1 25 LEU n 1 26 LYS n 1 27 TYR n 1 28 ILE n 1 29 THR n 1 30 PHE n 1 31 ARG n 1 32 SER n 1 33 PHE n 1 34 THR n 1 35 ALA n 1 36 VAL n 1 37 LEU n 1 38 ILE n 1 39 ALA n 1 40 PHE n 1 41 PHE n 1 42 LEU n 1 43 THR n 1 44 LEU n 1 45 VAL n 1 46 LEU n 1 47 SER n 1 48 PRO n 1 49 SER n 1 50 PHE n 1 51 ILE n 1 52 ASN n 1 53 ARG n 1 54 LEU n 1 55 ARG n 1 56 LYS n 1 57 ILE n 1 58 GLN n 1 59 ARG n 1 60 LEU n 1 61 PHE n 1 62 GLY n 1 63 GLY n 1 64 TYR n 1 65 VAL n 1 66 ARG n 1 67 GLU n 1 68 TYR n 1 69 THR n 1 70 PRO n 1 71 GLU n 1 72 SER n 1 73 HIS n 1 74 GLU n 1 75 VAL n 1 76 LYS n 1 77 LYS n 1 78 TYR n 1 79 THR n 1 80 PRO n 1 81 THR n 1 82 MET n 1 83 GLY n 1 84 GLY n 1 85 ILE n 1 86 VAL n 1 87 ILE n 1 88 LEU n 1 89 ILE n 1 90 VAL n 1 91 VAL n 1 92 THR n 1 93 LEU n 1 94 SER n 1 95 THR n 1 96 LEU n 1 97 LEU n 1 98 LEU n 1 99 MET n 1 100 ARG n 1 101 TRP n 1 102 ASP n 1 103 ILE n 1 104 LYS n 1 105 TYR n 1 106 THR n 1 107 TRP n 1 108 VAL n 1 109 VAL n 1 110 LEU n 1 111 LEU n 1 112 SER n 1 113 PHE n 1 114 LEU n 1 115 SER n 1 116 PHE n 1 117 GLY n 1 118 THR n 1 119 ILE n 1 120 GLY n 1 121 PHE n 1 122 TRP n 1 123 ASP n 1 124 ASP n 1 125 TYR n 1 126 VAL n 1 127 LYS n 1 128 LEU n 1 129 LYS n 1 130 ASN n 1 131 LYS n 1 132 LYS n 1 133 GLY n 1 134 ILE n 1 135 SER n 1 136 ILE n 1 137 LYS n 1 138 THR n 1 139 LYS n 1 140 PHE n 1 141 LEU n 1 142 LEU n 1 143 GLN n 1 144 VAL n 1 145 LEU n 1 146 SER n 1 147 ALA n 1 148 SER n 1 149 LEU n 1 150 ILE n 1 151 SER n 1 152 VAL n 1 153 LEU n 1 154 ILE n 1 155 TYR n 1 156 TYR n 1 157 TRP n 1 158 ALA n 1 159 ASP n 1 160 ILE n 1 161 ASP n 1 162 THR n 1 163 ILE n 1 164 LEU n 1 165 TYR n 1 166 PHE n 1 167 PRO n 1 168 PHE n 1 169 PHE n 1 170 LYS n 1 171 GLU n 1 172 LEU n 1 173 TYR n 1 174 VAL n 1 175 ASP n 1 176 LEU n 1 177 GLY n 1 178 VAL n 1 179 LEU n 1 180 TYR n 1 181 LEU n 1 182 PRO n 1 183 PHE n 1 184 ALA n 1 185 VAL n 1 186 PHE n 1 187 VAL n 1 188 ILE n 1 189 VAL n 1 190 GLY n 1 191 SER n 1 192 ALA n 1 193 ASN n 1 194 ALA n 1 195 VAL n 1 196 ASN n 1 197 LEU n 1 198 THR n 1 199 ASP n 1 200 GLY n 1 201 LEU n 1 202 ASP n 1 203 GLY n 1 204 LEU n 1 205 ALA n 1 206 ILE n 1 207 GLY n 1 208 PRO n 1 209 ALA n 1 210 MET n 1 211 THR n 1 212 THR n 1 213 ALA n 1 214 THR n 1 215 ALA n 1 216 LEU n 1 217 GLY n 1 218 VAL n 1 219 VAL n 1 220 ALA n 1 221 TYR n 1 222 ALA n 1 223 VAL n 1 224 GLY n 1 225 HIS n 1 226 SER n 1 227 LYS n 1 228 ILE n 1 229 ALA n 1 230 GLN n 1 231 TYR n 1 232 LEU n 1 233 ASN n 1 234 ILE n 1 235 PRO n 1 236 TYR n 1 237 VAL n 1 238 PRO n 1 239 TYR n 1 240 ALA n 1 241 GLY n 1 242 GLU n 1 243 LEU n 1 244 THR n 1 245 VAL n 1 246 PHE n 1 247 CYS n 1 248 PHE n 1 249 ALA n 1 250 LEU n 1 251 VAL n 1 252 GLY n 1 253 ALA n 1 254 GLY n 1 255 LEU n 1 256 GLY n 1 257 PHE n 1 258 LEU n 1 259 TRP n 1 260 PHE n 1 261 ASN n 1 262 SER n 1 263 PHE n 1 264 PRO n 1 265 ALA n 1 266 GLN n 1 267 MET n 1 268 PHE n 1 269 MET n 1 270 GLY n 1 271 ASP n 1 272 VAL n 1 273 GLY n 1 274 SER n 1 275 LEU n 1 276 SER n 1 277 ILE n 1 278 GLY n 1 279 ALA n 1 280 SER n 1 281 LEU n 1 282 ALA n 1 283 THR n 1 284 VAL n 1 285 ALA n 1 286 LEU n 1 287 LEU n 1 288 THR n 1 289 LYS n 1 290 SER n 1 291 GLU n 1 292 PHE n 1 293 ILE n 1 294 PHE n 1 295 ALA n 1 296 VAL n 1 297 ALA n 1 298 ALA n 1 299 GLY n 1 300 VAL n 1 301 PHE n 1 302 VAL n 1 303 PHE n 1 304 GLU n 1 305 THR n 1 306 ILE n 1 307 SER n 1 308 VAL n 1 309 ILE n 1 310 LEU n 1 311 GLN n 1 312 ILE n 1 313 ILE n 1 314 TYR n 1 315 PHE n 1 316 ARG n 1 317 TRP n 1 318 THR n 1 319 GLY n 1 320 GLY n 1 321 LYS n 1 322 ARG n 1 323 LEU n 1 324 PHE n 1 325 LYS n 1 326 ARG n 1 327 ALA n 1 328 PRO n 1 329 PHE n 1 330 HIS n 1 331 HIS n 1 332 HIS n 1 333 LEU n 1 334 GLU n 1 335 LEU n 1 336 ASN n 1 337 GLY n 1 338 LEU n 1 339 PRO n 1 340 GLU n 1 341 PRO n 1 342 LYS n 1 343 ILE n 1 344 VAL n 1 345 VAL n 1 346 ARG n 1 347 MET n 1 348 TRP n 1 349 ILE n 1 350 ILE n 1 351 SER n 1 352 ILE n 1 353 LEU n 1 354 LEU n 1 355 ALA n 1 356 ILE n 1 357 ILE n 1 358 ALA n 1 359 ILE n 1 360 SER n 1 361 MET n 1 362 LEU n 1 363 LYS n 1 364 LEU n 1 365 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 365 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'mraY, aq_053' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain VF5 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Aquifex aeolicus (strain VF5)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 224324 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain C41 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET26 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.db_code MRAY_AQUAE _struct_ref.db_name UNP _struct_ref.details ? _struct_ref.entity_id 1 _struct_ref.id 1 _struct_ref.seq_align ? _struct_ref.seq_dif ? _struct_ref.pdbx_db_accession O66465 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ;MLYQLALLLKDYWFAFNVLKYITFRSFTAVLIAFFLTLVLSPSFINRLRKIQRLFGGYVREYTPESHEVKKYTPTMGGIV ILIVVTLSTLLLMRWDIKYTWVVLLSFLSFGTIGFWDDYVKLKNKKGISIKTKFLLQVLSASLISVLIYYWADIDTILYF PFFKELYVDLGVLYLPFAVFVIVGSANAVNLTDGLDGLAIGPAMTTATALGVVAYAVGHSKIAQYLNIPYVPYAGELTVF CFALVGAGLGFLWFNSFPAQMFMGDVGSLSIGASLATVALLTKSEFIFAVAAGVFVFETISVILQIIYFRWTGGKRLFKR APFHHHLELNGLPEPKIVVRMWIISILLAIIAISMLKLR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_align_end ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5CKR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 365 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O66465 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 359 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 359 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5CKR GLY A 1 ? UNP O66465 ? ? 'expression tag' -5 1 1 5CKR PRO A 2 ? UNP O66465 ? ? 'expression tag' -4 2 1 5CKR ALA A 3 ? UNP O66465 ? ? 'expression tag' -3 3 1 5CKR VAL A 4 ? UNP O66465 ? ? 'expression tag' -2 4 1 5CKR PRO A 5 ? UNP O66465 ? ? 'expression tag' -1 5 1 5CKR ARG A 6 ? UNP O66465 ? ? 'expression tag' 0 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 57M non-polymer . 'Muraymycin D2' ;N-({(1S)-2-{[(2S)-1-{[3-({(1S,2S)-2-[(5-amino-5-deoxy-beta-D-ribofuranosyl)oxy]-1-carboxy-2-[(2S,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]ethyl}amino)propyl]amino}-4-methyl-1-oxopentan-2-yl]amino}-1-[(4S)-2-amino-3,4,5,6-tetrahydropyrimidin-4-yl]-2-oxoethyl}carbamoyl)-L-valine ; 'C37 H61 N11 O16' 915.944 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5CKR _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.00 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 69.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;50 mM MgCl2, 40% PEG400, and 100 mM sodium cacodylate pH 5.6 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-02-15 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.00 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5CKR _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.95 _reflns.d_resolution_low 67.9 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14178 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.0 _reflns.pdbx_Rmerge_I_obs 0.27 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 4.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.95 _reflns_shell.d_res_low 3.06 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.2 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.5 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5CKR _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 14053 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 51.025 _refine.ls_d_res_high 2.950 _refine.ls_percent_reflns_obs 99.28 _refine.ls_R_factor_obs 0.2477 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2470 _refine.ls_R_factor_R_free 0.2614 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free 702 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 4J72 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.49 _refine.pdbx_overall_phase_error 28.65 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2565 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 64 _refine_hist.number_atoms_solvent 9 _refine_hist.number_atoms_total 2638 _refine_hist.d_res_high 2.950 _refine_hist.d_res_low 51.025 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 2700 'X-RAY DIFFRACTION' ? f_angle_d 1.139 ? ? 3682 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.763 ? ? 900 'X-RAY DIFFRACTION' ? f_chiral_restr 0.049 ? ? 448 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 432 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.9500 3.1778 2562 0.3548 97.00 0.3814 . . 134 . . . . 'X-RAY DIFFRACTION' . 3.1778 3.4975 2620 0.2973 100.00 0.3245 . . 169 . . . . 'X-RAY DIFFRACTION' . 3.4975 4.0034 2660 0.2337 100.00 0.2433 . . 132 . . . . 'X-RAY DIFFRACTION' . 4.0034 5.0431 2708 0.2071 100.00 0.2065 . . 129 . . . . 'X-RAY DIFFRACTION' . 5.0431 51.0326 2801 0.2403 100.00 0.2543 . . 138 . . . . # _struct.entry_id 5CKR _struct.title 'Crystal Structure of MraY in complex with Muraymycin D2' _struct.pdbx_descriptor 'Phospho-N-acetylmuramoyl-pentapeptide-transferase (E.C.2.7.8.13)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5CKR _struct_keywords.text ;ALPHA-HELICAL, PNPT Superfamily, phospho-MurNAc-pentapeptide translocase, Membrane Protein, Bacterial cell wall, synthesis, natural product inhibitor, TRANSFERASE-ANTIBIOTIC complex ; _struct_keywords.pdbx_keywords TRANSFERASE/ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 26 ? GLY A 63 ? LYS A 20 GLY A 57 1 ? 38 HELX_P HELX_P2 AA2 GLY A 83 ? MET A 99 ? GLY A 77 MET A 93 1 ? 17 HELX_P HELX_P3 AA3 LYS A 104 ? LYS A 131 ? LYS A 98 LYS A 125 1 ? 28 HELX_P HELX_P4 AA4 SER A 135 ? TYR A 156 ? SER A 129 TYR A 150 1 ? 22 HELX_P HELX_P5 AA5 LEU A 179 ? ASP A 199 ? LEU A 173 ASP A 193 1 ? 21 HELX_P HELX_P6 AA6 ALA A 205 ? VAL A 223 ? ALA A 199 VAL A 217 1 ? 19 HELX_P HELX_P7 AA7 HIS A 225 ? LEU A 232 ? HIS A 219 LEU A 226 1 ? 8 HELX_P HELX_P8 AA8 ALA A 240 ? SER A 262 ? ALA A 234 SER A 256 1 ? 23 HELX_P HELX_P9 AA9 MET A 269 ? THR A 288 ? MET A 263 THR A 282 1 ? 20 HELX_P HELX_P10 AB1 SER A 290 ? ALA A 298 ? SER A 284 ALA A 292 1 ? 9 HELX_P HELX_P11 AB2 ALA A 298 ? GLY A 319 ? ALA A 292 GLY A 313 1 ? 22 HELX_P HELX_P12 AB3 PRO A 328 ? ASN A 336 ? PRO A 322 ASN A 330 1 ? 9 HELX_P HELX_P13 AB4 PRO A 339 ? LYS A 363 ? PRO A 333 LYS A 357 1 ? 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 263 A . ? PHE 257 A PRO 264 A ? PRO 258 A 1 -10.71 2 ALA 327 A . ? ALA 321 A PRO 328 A ? PRO 322 A 1 6.23 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 163 ? TYR A 165 ? ILE A 157 TYR A 159 AA1 2 TYR A 173 ? ASP A 175 ? TYR A 167 ASP A 169 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id LEU _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 164 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id LEU _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 158 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 174 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 168 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 57M _struct_site.pdbx_auth_seq_id 401 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 20 _struct_site.details 'binding site for residue 57M A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 LYS A 76 ? LYS A 70 . ? 1_555 ? 2 AC1 20 THR A 81 ? THR A 75 . ? 1_555 ? 3 AC1 20 ASN A 196 ? ASN A 190 . ? 1_555 ? 4 AC1 20 ASP A 199 ? ASP A 193 . ? 1_555 ? 5 AC1 20 GLY A 200 ? GLY A 194 . ? 1_555 ? 6 AC1 20 LEU A 201 ? LEU A 195 . ? 1_555 ? 7 AC1 20 ASP A 202 ? ASP A 196 . ? 1_555 ? 8 AC1 20 ASN A 261 ? ASN A 255 . ? 1_555 ? 9 AC1 20 PHE A 268 ? PHE A 262 . ? 1_555 ? 10 AC1 20 MET A 269 ? MET A 263 . ? 1_555 ? 11 AC1 20 GLY A 270 ? GLY A 264 . ? 1_555 ? 12 AC1 20 ASP A 271 ? ASP A 265 . ? 1_555 ? 13 AC1 20 SER A 274 ? SER A 268 . ? 1_555 ? 14 AC1 20 VAL A 308 ? VAL A 302 . ? 1_555 ? 15 AC1 20 GLN A 311 ? GLN A 305 . ? 1_555 ? 16 AC1 20 ARG A 326 ? ARG A 320 . ? 1_555 ? 17 AC1 20 ALA A 327 ? ALA A 321 . ? 1_555 ? 18 AC1 20 PRO A 328 ? PRO A 322 . ? 1_555 ? 19 AC1 20 HIS A 331 ? HIS A 325 . ? 1_555 ? 20 AC1 20 HOH C . ? HOH A 503 . ? 1_555 ? # _atom_sites.entry_id 5CKR _atom_sites.fract_transf_matrix[1][1] 0.010584 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009799 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007364 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -5 ? ? ? A . n A 1 2 PRO 2 -4 ? ? ? A . n A 1 3 ALA 3 -3 ? ? ? A . n A 1 4 VAL 4 -2 ? ? ? A . n A 1 5 PRO 5 -1 ? ? ? A . n A 1 6 ARG 6 0 ? ? ? A . n A 1 7 MET 7 1 ? ? ? A . n A 1 8 LEU 8 2 ? ? ? A . n A 1 9 TYR 9 3 ? ? ? A . n A 1 10 GLN 10 4 ? ? ? A . n A 1 11 LEU 11 5 ? ? ? A . n A 1 12 ALA 12 6 ? ? ? A . n A 1 13 LEU 13 7 ? ? ? A . n A 1 14 LEU 14 8 ? ? ? A . n A 1 15 LEU 15 9 ? ? ? A . n A 1 16 LYS 16 10 ? ? ? A . n A 1 17 ASP 17 11 ? ? ? A . n A 1 18 TYR 18 12 ? ? ? A . n A 1 19 TRP 19 13 ? ? ? A . n A 1 20 PHE 20 14 ? ? ? A . n A 1 21 ALA 21 15 ? ? ? A . n A 1 22 PHE 22 16 ? ? ? A . n A 1 23 ASN 23 17 ? ? ? A . n A 1 24 VAL 24 18 ? ? ? A . n A 1 25 LEU 25 19 ? ? ? A . n A 1 26 LYS 26 20 20 LYS LYS A . n A 1 27 TYR 27 21 21 TYR TYR A . n A 1 28 ILE 28 22 22 ILE ILE A . n A 1 29 THR 29 23 23 THR THR A . n A 1 30 PHE 30 24 24 PHE PHE A . n A 1 31 ARG 31 25 25 ARG ARG A . n A 1 32 SER 32 26 26 SER SER A . n A 1 33 PHE 33 27 27 PHE PHE A . n A 1 34 THR 34 28 28 THR THR A . n A 1 35 ALA 35 29 29 ALA ALA A . n A 1 36 VAL 36 30 30 VAL VAL A . n A 1 37 LEU 37 31 31 LEU LEU A . n A 1 38 ILE 38 32 32 ILE ILE A . n A 1 39 ALA 39 33 33 ALA ALA A . n A 1 40 PHE 40 34 34 PHE PHE A . n A 1 41 PHE 41 35 35 PHE PHE A . n A 1 42 LEU 42 36 36 LEU LEU A . n A 1 43 THR 43 37 37 THR THR A . n A 1 44 LEU 44 38 38 LEU LEU A . n A 1 45 VAL 45 39 39 VAL VAL A . n A 1 46 LEU 46 40 40 LEU LEU A . n A 1 47 SER 47 41 41 SER SER A . n A 1 48 PRO 48 42 42 PRO PRO A . n A 1 49 SER 49 43 43 SER SER A . n A 1 50 PHE 50 44 44 PHE PHE A . n A 1 51 ILE 51 45 45 ILE ILE A . n A 1 52 ASN 52 46 46 ASN ASN A . n A 1 53 ARG 53 47 47 ARG ARG A . n A 1 54 LEU 54 48 48 LEU LEU A . n A 1 55 ARG 55 49 49 ARG ARG A . n A 1 56 LYS 56 50 50 LYS LYS A . n A 1 57 ILE 57 51 51 ILE ILE A . n A 1 58 GLN 58 52 52 GLN GLN A . n A 1 59 ARG 59 53 53 ARG ARG A . n A 1 60 LEU 60 54 54 LEU LEU A . n A 1 61 PHE 61 55 55 PHE PHE A . n A 1 62 GLY 62 56 56 GLY GLY A . n A 1 63 GLY 63 57 57 GLY GLY A . n A 1 64 TYR 64 58 ? ? ? A . n A 1 65 VAL 65 59 ? ? ? A . n A 1 66 ARG 66 60 ? ? ? A . n A 1 67 GLU 67 61 ? ? ? A . n A 1 68 TYR 68 62 ? ? ? A . n A 1 69 THR 69 63 ? ? ? A . n A 1 70 PRO 70 64 ? ? ? A . n A 1 71 GLU 71 65 ? ? ? A . n A 1 72 SER 72 66 ? ? ? A . n A 1 73 HIS 73 67 ? ? ? A . n A 1 74 GLU 74 68 ? ? ? A . n A 1 75 VAL 75 69 69 VAL VAL A . n A 1 76 LYS 76 70 70 LYS LYS A . n A 1 77 LYS 77 71 71 LYS LYS A . n A 1 78 TYR 78 72 72 TYR TYR A . n A 1 79 THR 79 73 73 THR THR A . n A 1 80 PRO 80 74 74 PRO PRO A . n A 1 81 THR 81 75 75 THR THR A . n A 1 82 MET 82 76 76 MET MET A . n A 1 83 GLY 83 77 77 GLY GLY A . n A 1 84 GLY 84 78 78 GLY GLY A . n A 1 85 ILE 85 79 79 ILE ILE A . n A 1 86 VAL 86 80 80 VAL VAL A . n A 1 87 ILE 87 81 81 ILE ILE A . n A 1 88 LEU 88 82 82 LEU LEU A . n A 1 89 ILE 89 83 83 ILE ILE A . n A 1 90 VAL 90 84 84 VAL VAL A . n A 1 91 VAL 91 85 85 VAL VAL A . n A 1 92 THR 92 86 86 THR THR A . n A 1 93 LEU 93 87 87 LEU LEU A . n A 1 94 SER 94 88 88 SER SER A . n A 1 95 THR 95 89 89 THR THR A . n A 1 96 LEU 96 90 90 LEU LEU A . n A 1 97 LEU 97 91 91 LEU LEU A . n A 1 98 LEU 98 92 92 LEU LEU A . n A 1 99 MET 99 93 93 MET MET A . n A 1 100 ARG 100 94 94 ARG ARG A . n A 1 101 TRP 101 95 95 TRP TRP A . n A 1 102 ASP 102 96 96 ASP ASP A . n A 1 103 ILE 103 97 97 ILE ILE A . n A 1 104 LYS 104 98 98 LYS LYS A . n A 1 105 TYR 105 99 99 TYR TYR A . n A 1 106 THR 106 100 100 THR THR A . n A 1 107 TRP 107 101 101 TRP TRP A . n A 1 108 VAL 108 102 102 VAL VAL A . n A 1 109 VAL 109 103 103 VAL VAL A . n A 1 110 LEU 110 104 104 LEU LEU A . n A 1 111 LEU 111 105 105 LEU LEU A . n A 1 112 SER 112 106 106 SER SER A . n A 1 113 PHE 113 107 107 PHE PHE A . n A 1 114 LEU 114 108 108 LEU LEU A . n A 1 115 SER 115 109 109 SER SER A . n A 1 116 PHE 116 110 110 PHE PHE A . n A 1 117 GLY 117 111 111 GLY GLY A . n A 1 118 THR 118 112 112 THR THR A . n A 1 119 ILE 119 113 113 ILE ILE A . n A 1 120 GLY 120 114 114 GLY GLY A . n A 1 121 PHE 121 115 115 PHE PHE A . n A 1 122 TRP 122 116 116 TRP TRP A . n A 1 123 ASP 123 117 117 ASP ASP A . n A 1 124 ASP 124 118 118 ASP ASP A . n A 1 125 TYR 125 119 119 TYR TYR A . n A 1 126 VAL 126 120 120 VAL VAL A . n A 1 127 LYS 127 121 121 LYS LYS A . n A 1 128 LEU 128 122 122 LEU LEU A . n A 1 129 LYS 129 123 123 LYS LYS A . n A 1 130 ASN 130 124 124 ASN ASN A . n A 1 131 LYS 131 125 125 LYS LYS A . n A 1 132 LYS 132 126 126 LYS LYS A . n A 1 133 GLY 133 127 127 GLY GLY A . n A 1 134 ILE 134 128 128 ILE ILE A . n A 1 135 SER 135 129 129 SER SER A . n A 1 136 ILE 136 130 130 ILE ILE A . n A 1 137 LYS 137 131 131 LYS LYS A . n A 1 138 THR 138 132 132 THR THR A . n A 1 139 LYS 139 133 133 LYS LYS A . n A 1 140 PHE 140 134 134 PHE PHE A . n A 1 141 LEU 141 135 135 LEU LEU A . n A 1 142 LEU 142 136 136 LEU LEU A . n A 1 143 GLN 143 137 137 GLN GLN A . n A 1 144 VAL 144 138 138 VAL VAL A . n A 1 145 LEU 145 139 139 LEU LEU A . n A 1 146 SER 146 140 140 SER SER A . n A 1 147 ALA 147 141 141 ALA ALA A . n A 1 148 SER 148 142 142 SER SER A . n A 1 149 LEU 149 143 143 LEU LEU A . n A 1 150 ILE 150 144 144 ILE ILE A . n A 1 151 SER 151 145 145 SER SER A . n A 1 152 VAL 152 146 146 VAL VAL A . n A 1 153 LEU 153 147 147 LEU LEU A . n A 1 154 ILE 154 148 148 ILE ILE A . n A 1 155 TYR 155 149 149 TYR TYR A . n A 1 156 TYR 156 150 150 TYR TYR A . n A 1 157 TRP 157 151 151 TRP TRP A . n A 1 158 ALA 158 152 152 ALA ALA A . n A 1 159 ASP 159 153 153 ASP ASP A . n A 1 160 ILE 160 154 154 ILE ILE A . n A 1 161 ASP 161 155 155 ASP ASP A . n A 1 162 THR 162 156 156 THR THR A . n A 1 163 ILE 163 157 157 ILE ILE A . n A 1 164 LEU 164 158 158 LEU LEU A . n A 1 165 TYR 165 159 159 TYR TYR A . n A 1 166 PHE 166 160 160 PHE PHE A . n A 1 167 PRO 167 161 161 PRO PRO A . n A 1 168 PHE 168 162 162 PHE PHE A . n A 1 169 PHE 169 163 163 PHE PHE A . n A 1 170 LYS 170 164 164 LYS LYS A . n A 1 171 GLU 171 165 165 GLU GLU A . n A 1 172 LEU 172 166 166 LEU LEU A . n A 1 173 TYR 173 167 167 TYR TYR A . n A 1 174 VAL 174 168 168 VAL VAL A . n A 1 175 ASP 175 169 169 ASP ASP A . n A 1 176 LEU 176 170 170 LEU LEU A . n A 1 177 GLY 177 171 171 GLY GLY A . n A 1 178 VAL 178 172 172 VAL VAL A . n A 1 179 LEU 179 173 173 LEU LEU A . n A 1 180 TYR 180 174 174 TYR TYR A . n A 1 181 LEU 181 175 175 LEU LEU A . n A 1 182 PRO 182 176 176 PRO PRO A . n A 1 183 PHE 183 177 177 PHE PHE A . n A 1 184 ALA 184 178 178 ALA ALA A . n A 1 185 VAL 185 179 179 VAL VAL A . n A 1 186 PHE 186 180 180 PHE PHE A . n A 1 187 VAL 187 181 181 VAL VAL A . n A 1 188 ILE 188 182 182 ILE ILE A . n A 1 189 VAL 189 183 183 VAL VAL A . n A 1 190 GLY 190 184 184 GLY GLY A . n A 1 191 SER 191 185 185 SER SER A . n A 1 192 ALA 192 186 186 ALA ALA A . n A 1 193 ASN 193 187 187 ASN ASN A . n A 1 194 ALA 194 188 188 ALA ALA A . n A 1 195 VAL 195 189 189 VAL VAL A . n A 1 196 ASN 196 190 190 ASN ASN A . n A 1 197 LEU 197 191 191 LEU LEU A . n A 1 198 THR 198 192 192 THR THR A . n A 1 199 ASP 199 193 193 ASP ASP A . n A 1 200 GLY 200 194 194 GLY GLY A . n A 1 201 LEU 201 195 195 LEU LEU A . n A 1 202 ASP 202 196 196 ASP ASP A . n A 1 203 GLY 203 197 197 GLY GLY A . n A 1 204 LEU 204 198 198 LEU LEU A . n A 1 205 ALA 205 199 199 ALA ALA A . n A 1 206 ILE 206 200 200 ILE ILE A . n A 1 207 GLY 207 201 201 GLY GLY A . n A 1 208 PRO 208 202 202 PRO PRO A . n A 1 209 ALA 209 203 203 ALA ALA A . n A 1 210 MET 210 204 204 MET MET A . n A 1 211 THR 211 205 205 THR THR A . n A 1 212 THR 212 206 206 THR THR A . n A 1 213 ALA 213 207 207 ALA ALA A . n A 1 214 THR 214 208 208 THR THR A . n A 1 215 ALA 215 209 209 ALA ALA A . n A 1 216 LEU 216 210 210 LEU LEU A . n A 1 217 GLY 217 211 211 GLY GLY A . n A 1 218 VAL 218 212 212 VAL VAL A . n A 1 219 VAL 219 213 213 VAL VAL A . n A 1 220 ALA 220 214 214 ALA ALA A . n A 1 221 TYR 221 215 215 TYR TYR A . n A 1 222 ALA 222 216 216 ALA ALA A . n A 1 223 VAL 223 217 217 VAL VAL A . n A 1 224 GLY 224 218 218 GLY GLY A . n A 1 225 HIS 225 219 219 HIS HIS A . n A 1 226 SER 226 220 220 SER SER A . n A 1 227 LYS 227 221 221 LYS LYS A . n A 1 228 ILE 228 222 222 ILE ILE A . n A 1 229 ALA 229 223 223 ALA ALA A . n A 1 230 GLN 230 224 224 GLN GLN A . n A 1 231 TYR 231 225 225 TYR TYR A . n A 1 232 LEU 232 226 226 LEU LEU A . n A 1 233 ASN 233 227 227 ASN ASN A . n A 1 234 ILE 234 228 228 ILE ILE A . n A 1 235 PRO 235 229 229 PRO PRO A . n A 1 236 TYR 236 230 230 TYR TYR A . n A 1 237 VAL 237 231 231 VAL VAL A . n A 1 238 PRO 238 232 232 PRO PRO A . n A 1 239 TYR 239 233 233 TYR TYR A . n A 1 240 ALA 240 234 234 ALA ALA A . n A 1 241 GLY 241 235 235 GLY GLY A . n A 1 242 GLU 242 236 236 GLU GLU A . n A 1 243 LEU 243 237 237 LEU LEU A . n A 1 244 THR 244 238 238 THR THR A . n A 1 245 VAL 245 239 239 VAL VAL A . n A 1 246 PHE 246 240 240 PHE PHE A . n A 1 247 CYS 247 241 241 CYS CYS A . n A 1 248 PHE 248 242 242 PHE PHE A . n A 1 249 ALA 249 243 243 ALA ALA A . n A 1 250 LEU 250 244 244 LEU LEU A . n A 1 251 VAL 251 245 245 VAL VAL A . n A 1 252 GLY 252 246 246 GLY GLY A . n A 1 253 ALA 253 247 247 ALA ALA A . n A 1 254 GLY 254 248 248 GLY GLY A . n A 1 255 LEU 255 249 249 LEU LEU A . n A 1 256 GLY 256 250 250 GLY GLY A . n A 1 257 PHE 257 251 251 PHE PHE A . n A 1 258 LEU 258 252 252 LEU LEU A . n A 1 259 TRP 259 253 253 TRP TRP A . n A 1 260 PHE 260 254 254 PHE PHE A . n A 1 261 ASN 261 255 255 ASN ASN A . n A 1 262 SER 262 256 256 SER SER A . n A 1 263 PHE 263 257 257 PHE PHE A . n A 1 264 PRO 264 258 258 PRO PRO A . n A 1 265 ALA 265 259 259 ALA ALA A . n A 1 266 GLN 266 260 260 GLN GLN A . n A 1 267 MET 267 261 261 MET MET A . n A 1 268 PHE 268 262 262 PHE PHE A . n A 1 269 MET 269 263 263 MET MET A . n A 1 270 GLY 270 264 264 GLY GLY A . n A 1 271 ASP 271 265 265 ASP ASP A . n A 1 272 VAL 272 266 266 VAL VAL A . n A 1 273 GLY 273 267 267 GLY GLY A . n A 1 274 SER 274 268 268 SER SER A . n A 1 275 LEU 275 269 269 LEU LEU A . n A 1 276 SER 276 270 270 SER SER A . n A 1 277 ILE 277 271 271 ILE ILE A . n A 1 278 GLY 278 272 272 GLY GLY A . n A 1 279 ALA 279 273 273 ALA ALA A . n A 1 280 SER 280 274 274 SER SER A . n A 1 281 LEU 281 275 275 LEU LEU A . n A 1 282 ALA 282 276 276 ALA ALA A . n A 1 283 THR 283 277 277 THR THR A . n A 1 284 VAL 284 278 278 VAL VAL A . n A 1 285 ALA 285 279 279 ALA ALA A . n A 1 286 LEU 286 280 280 LEU LEU A . n A 1 287 LEU 287 281 281 LEU LEU A . n A 1 288 THR 288 282 282 THR THR A . n A 1 289 LYS 289 283 283 LYS LYS A . n A 1 290 SER 290 284 284 SER SER A . n A 1 291 GLU 291 285 285 GLU GLU A . n A 1 292 PHE 292 286 286 PHE PHE A . n A 1 293 ILE 293 287 287 ILE ILE A . n A 1 294 PHE 294 288 288 PHE PHE A . n A 1 295 ALA 295 289 289 ALA ALA A . n A 1 296 VAL 296 290 290 VAL VAL A . n A 1 297 ALA 297 291 291 ALA ALA A . n A 1 298 ALA 298 292 292 ALA ALA A . n A 1 299 GLY 299 293 293 GLY GLY A . n A 1 300 VAL 300 294 294 VAL VAL A . n A 1 301 PHE 301 295 295 PHE PHE A . n A 1 302 VAL 302 296 296 VAL VAL A . n A 1 303 PHE 303 297 297 PHE PHE A . n A 1 304 GLU 304 298 298 GLU GLU A . n A 1 305 THR 305 299 299 THR THR A . n A 1 306 ILE 306 300 300 ILE ILE A . n A 1 307 SER 307 301 301 SER SER A . n A 1 308 VAL 308 302 302 VAL VAL A . n A 1 309 ILE 309 303 303 ILE ILE A . n A 1 310 LEU 310 304 304 LEU LEU A . n A 1 311 GLN 311 305 305 GLN GLN A . n A 1 312 ILE 312 306 306 ILE ILE A . n A 1 313 ILE 313 307 307 ILE ILE A . n A 1 314 TYR 314 308 308 TYR TYR A . n A 1 315 PHE 315 309 309 PHE PHE A . n A 1 316 ARG 316 310 310 ARG ARG A . n A 1 317 TRP 317 311 311 TRP TRP A . n A 1 318 THR 318 312 312 THR THR A . n A 1 319 GLY 319 313 313 GLY GLY A . n A 1 320 GLY 320 314 314 GLY GLY A . n A 1 321 LYS 321 315 315 LYS LYS A . n A 1 322 ARG 322 316 316 ARG ARG A . n A 1 323 LEU 323 317 317 LEU LEU A . n A 1 324 PHE 324 318 318 PHE PHE A . n A 1 325 LYS 325 319 319 LYS LYS A . n A 1 326 ARG 326 320 320 ARG ARG A . n A 1 327 ALA 327 321 321 ALA ALA A . n A 1 328 PRO 328 322 322 PRO PRO A . n A 1 329 PHE 329 323 323 PHE PHE A . n A 1 330 HIS 330 324 324 HIS HIS A . n A 1 331 HIS 331 325 325 HIS HIS A . n A 1 332 HIS 332 326 326 HIS HIS A . n A 1 333 LEU 333 327 327 LEU LEU A . n A 1 334 GLU 334 328 328 GLU GLU A . n A 1 335 LEU 335 329 329 LEU LEU A . n A 1 336 ASN 336 330 330 ASN ASN A . n A 1 337 GLY 337 331 331 GLY GLY A . n A 1 338 LEU 338 332 332 LEU LEU A . n A 1 339 PRO 339 333 333 PRO PRO A . n A 1 340 GLU 340 334 334 GLU GLU A . n A 1 341 PRO 341 335 335 PRO PRO A . n A 1 342 LYS 342 336 336 LYS LYS A . n A 1 343 ILE 343 337 337 ILE ILE A . n A 1 344 VAL 344 338 338 VAL VAL A . n A 1 345 VAL 345 339 339 VAL VAL A . n A 1 346 ARG 346 340 340 ARG ARG A . n A 1 347 MET 347 341 341 MET MET A . n A 1 348 TRP 348 342 342 TRP TRP A . n A 1 349 ILE 349 343 343 ILE ILE A . n A 1 350 ILE 350 344 344 ILE ILE A . n A 1 351 SER 351 345 345 SER SER A . n A 1 352 ILE 352 346 346 ILE ILE A . n A 1 353 LEU 353 347 347 LEU LEU A . n A 1 354 LEU 354 348 348 LEU LEU A . n A 1 355 ALA 355 349 349 ALA ALA A . n A 1 356 ILE 356 350 350 ILE ILE A . n A 1 357 ILE 357 351 351 ILE ILE A . n A 1 358 ALA 358 352 352 ALA ALA A . n A 1 359 ILE 359 353 353 ILE ILE A . n A 1 360 SER 360 354 354 SER SER A . n A 1 361 MET 361 355 355 MET MET A . n A 1 362 LEU 362 356 356 LEU LEU A . n A 1 363 LYS 363 357 357 LYS LYS A . n A 1 364 LEU 364 358 358 LEU LEU A . n A 1 365 ARG 365 359 359 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 57M 1 401 360 57M LIG A . C 3 HOH 1 501 6 HOH HOH A . C 3 HOH 2 502 5 HOH HOH A . C 3 HOH 3 503 8 HOH HOH A . C 3 HOH 4 504 2 HOH HOH A . C 3 HOH 5 505 9 HOH HOH A . C 3 HOH 6 506 7 HOH HOH A . C 3 HOH 7 507 3 HOH HOH A . C 3 HOH 8 508 1 HOH HOH A . C 3 HOH 9 509 4 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2700 ? 1 MORE -26 ? 1 'SSA (A^2)' 28170 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-03-02 2 'Structure model' 1 1 2016-06-01 3 'Structure model' 1 2 2017-09-27 4 'Structure model' 1 3 2019-12-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' 'Author supporting evidence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 3 'Structure model' pdbx_audit_support 3 3 'Structure model' pdbx_struct_oper_list 4 3 'Structure model' software 5 4 'Structure model' pdbx_audit_support # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_id_CSD' 2 3 'Structure model' '_pdbx_audit_support.funding_organization' 3 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 4 3 'Structure model' '_software.classification' 5 4 'Structure model' '_pdbx_audit_support.funding_organization' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? MOSFLM ? ? ? 0.6.1 2 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? 0.8-pre 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? iMOSFLM ? ? ? 0.7.1 4 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 5 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A ASP 193 ? ? O A HOH 501 ? ? 1.96 2 1 O A ILE 148 ? ? O A ALA 152 ? ? 2.07 3 1 O A GLY 197 ? ? NE1 A TRP 342 ? ? 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 98 ? ? 78.35 -2.30 2 1 LYS A 125 ? ? 80.19 -1.27 3 1 TYR A 150 ? ? -120.75 -64.07 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 47 ? CG ? A ARG 53 CG 2 1 Y 1 A ARG 47 ? CD ? A ARG 53 CD 3 1 Y 1 A ARG 47 ? NE ? A ARG 53 NE 4 1 Y 1 A ARG 47 ? CZ ? A ARG 53 CZ 5 1 Y 1 A ARG 47 ? NH1 ? A ARG 53 NH1 6 1 Y 1 A ARG 47 ? NH2 ? A ARG 53 NH2 7 1 Y 1 A TYR 72 ? CG ? A TYR 78 CG 8 1 Y 1 A TYR 72 ? CD1 ? A TYR 78 CD1 9 1 Y 1 A TYR 72 ? CD2 ? A TYR 78 CD2 10 1 Y 1 A TYR 72 ? CE1 ? A TYR 78 CE1 11 1 Y 1 A TYR 72 ? CE2 ? A TYR 78 CE2 12 1 Y 1 A TYR 72 ? CZ ? A TYR 78 CZ 13 1 Y 1 A TYR 72 ? OH ? A TYR 78 OH 14 1 Y 1 A LYS 125 ? CG ? A LYS 131 CG 15 1 Y 1 A LYS 125 ? CD ? A LYS 131 CD 16 1 Y 1 A LYS 125 ? CE ? A LYS 131 CE 17 1 Y 1 A LYS 125 ? NZ ? A LYS 131 NZ 18 1 Y 1 A LYS 131 ? CG ? A LYS 137 CG 19 1 Y 1 A LYS 131 ? CD ? A LYS 137 CD 20 1 Y 1 A LYS 131 ? CE ? A LYS 137 CE 21 1 Y 1 A LYS 131 ? NZ ? A LYS 137 NZ 22 1 Y 1 A LYS 357 ? CG ? A LYS 363 CG 23 1 Y 1 A LYS 357 ? CD ? A LYS 363 CD 24 1 Y 1 A LYS 357 ? CE ? A LYS 363 CE 25 1 Y 1 A LYS 357 ? NZ ? A LYS 363 NZ 26 1 Y 1 A ARG 359 ? CG ? A ARG 365 CG 27 1 Y 1 A ARG 359 ? CD ? A ARG 365 CD 28 1 Y 1 A ARG 359 ? NE ? A ARG 365 NE 29 1 Y 1 A ARG 359 ? CZ ? A ARG 365 CZ 30 1 Y 1 A ARG 359 ? NH1 ? A ARG 365 NH1 31 1 Y 1 A ARG 359 ? NH2 ? A ARG 365 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -5 ? A GLY 1 2 1 Y 1 A PRO -4 ? A PRO 2 3 1 Y 1 A ALA -3 ? A ALA 3 4 1 Y 1 A VAL -2 ? A VAL 4 5 1 Y 1 A PRO -1 ? A PRO 5 6 1 Y 1 A ARG 0 ? A ARG 6 7 1 Y 1 A MET 1 ? A MET 7 8 1 Y 1 A LEU 2 ? A LEU 8 9 1 Y 1 A TYR 3 ? A TYR 9 10 1 Y 1 A GLN 4 ? A GLN 10 11 1 Y 1 A LEU 5 ? A LEU 11 12 1 Y 1 A ALA 6 ? A ALA 12 13 1 Y 1 A LEU 7 ? A LEU 13 14 1 Y 1 A LEU 8 ? A LEU 14 15 1 Y 1 A LEU 9 ? A LEU 15 16 1 Y 1 A LYS 10 ? A LYS 16 17 1 Y 1 A ASP 11 ? A ASP 17 18 1 Y 1 A TYR 12 ? A TYR 18 19 1 Y 1 A TRP 13 ? A TRP 19 20 1 Y 1 A PHE 14 ? A PHE 20 21 1 Y 1 A ALA 15 ? A ALA 21 22 1 Y 1 A PHE 16 ? A PHE 22 23 1 Y 1 A ASN 17 ? A ASN 23 24 1 Y 1 A VAL 18 ? A VAL 24 25 1 Y 1 A LEU 19 ? A LEU 25 26 1 Y 1 A TYR 58 ? A TYR 64 27 1 Y 1 A VAL 59 ? A VAL 65 28 1 Y 1 A ARG 60 ? A ARG 66 29 1 Y 1 A GLU 61 ? A GLU 67 30 1 Y 1 A TYR 62 ? A TYR 68 31 1 Y 1 A THR 63 ? A THR 69 32 1 Y 1 A PRO 64 ? A PRO 70 33 1 Y 1 A GLU 65 ? A GLU 71 34 1 Y 1 A SER 66 ? A SER 72 35 1 Y 1 A HIS 67 ? A HIS 73 36 1 Y 1 A GLU 68 ? A GLU 74 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'R01 GM100984' _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'Muraymycin D2' 57M 3 water HOH #