data_5CL4 # _entry.id 5CL4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5CL4 pdb_00005cl4 10.2210/pdb5cl4/pdb WWPDB D_1000211728 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 5CL3 unspecified PDB . 5CL5 unspecified PDB . 5CL6 unspecified PDB . 5CL7 unspecified PDB . 5CL8 unspecified PDB . 5CL9 unspecified PDB . 5CLA unspecified PDB . 5CLB unspecified PDB . 5CLC unspecified PDB . 5CLD unspecified PDB . 5CLE unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5CL4 _pdbx_database_status.recvd_initial_deposition_date 2015-07-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mullins, E.A.' 1 'Eichman, B.F.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 527 _citation.language ? _citation.page_first 254 _citation.page_last 258 _citation.title 'The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nature15728 _citation.pdbx_database_id_PubMed 26524531 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mullins, E.A.' 1 ? primary 'Shi, R.' 2 ? primary 'Parsons, Z.D.' 3 ? primary 'Yuen, P.K.' 4 ? primary 'David, S.S.' 5 ? primary 'Igarashi, Y.' 6 ? primary 'Eichman, B.F.' 7 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 112.740 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5CL4 _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.247 _cell.length_a_esd ? _cell.length_b 93.558 _cell.length_b_esd ? _cell.length_c 47.976 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CL4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man AlkD 28578.043 1 3.2.2.- ? ? ? 2 polymer syn ;DNA (5'-D(*CP*CP*CP*GP*AP*(DZM)P*AP*GP*TP*CP*CP*G)-3') ; 3645.420 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*CP*GP*GP*AP*CP*TP*TP*TP*CP*GP*GP*G)-3') ; 3694.402 1 ? ? ? ? 4 non-polymer syn '7-methyl-3H-imidazo[4,5-c]pyridin-4-amine' 148.165 1 ? ? ? ? 5 water nat water 18.015 207 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPVPMHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREF QAAALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLK YKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNYGINNEKIGETL S ; ;GPVPMHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREF QAAALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLK YKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNYGINNEKIGETL S ; A ? 2 polydeoxyribonucleotide no yes '(DC)(DC)(DC)(DG)(DA)(DZM)(DA)(DG)(DT)(DC)(DC)(DG)' CCCGAAAGTCCG B ? 3 polydeoxyribonucleotide no no '(DC)(DG)(DG)(DA)(DC)(DT)(DT)(DT)(DC)(DG)(DG)(DG)' CGGACTTTCGGG C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 VAL n 1 4 PRO n 1 5 MET n 1 6 HIS n 1 7 PRO n 1 8 PHE n 1 9 VAL n 1 10 LYS n 1 11 ALA n 1 12 LEU n 1 13 GLN n 1 14 GLU n 1 15 HIS n 1 16 PHE n 1 17 THR n 1 18 ALA n 1 19 HIS n 1 20 GLN n 1 21 ASN n 1 22 PRO n 1 23 GLU n 1 24 LYS n 1 25 ALA n 1 26 GLU n 1 27 PRO n 1 28 MET n 1 29 ALA n 1 30 ARG n 1 31 TYR n 1 32 MET n 1 33 LYS n 1 34 ASN n 1 35 HIS n 1 36 PHE n 1 37 LEU n 1 38 PHE n 1 39 LEU n 1 40 GLY n 1 41 ILE n 1 42 GLN n 1 43 THR n 1 44 PRO n 1 45 GLU n 1 46 ARG n 1 47 ARG n 1 48 GLN n 1 49 LEU n 1 50 LEU n 1 51 LYS n 1 52 ASP n 1 53 ILE n 1 54 ILE n 1 55 GLN n 1 56 ILE n 1 57 HIS n 1 58 THR n 1 59 LEU n 1 60 PRO n 1 61 ASP n 1 62 GLN n 1 63 LYS n 1 64 ASP n 1 65 PHE n 1 66 GLN n 1 67 ILE n 1 68 ILE n 1 69 ILE n 1 70 ARG n 1 71 GLU n 1 72 LEU n 1 73 TRP n 1 74 ASP n 1 75 LEU n 1 76 PRO n 1 77 GLU n 1 78 ARG n 1 79 GLU n 1 80 PHE n 1 81 GLN n 1 82 ALA n 1 83 ALA n 1 84 ALA n 1 85 LEU n 1 86 ASP n 1 87 ILE n 1 88 MET n 1 89 GLN n 1 90 LYS n 1 91 TYR n 1 92 LYS n 1 93 LYS n 1 94 HIS n 1 95 ILE n 1 96 ASN n 1 97 GLU n 1 98 THR n 1 99 HIS n 1 100 ILE n 1 101 PRO n 1 102 PHE n 1 103 LEU n 1 104 GLU n 1 105 GLU n 1 106 LEU n 1 107 ILE n 1 108 VAL n 1 109 THR n 1 110 LYS n 1 111 SER n 1 112 TRP n 1 113 TRP n 1 114 ASP n 1 115 SER n 1 116 VAL n 1 117 ASP n 1 118 SER n 1 119 ILE n 1 120 VAL n 1 121 PRO n 1 122 THR n 1 123 PHE n 1 124 LEU n 1 125 GLY n 1 126 ASP n 1 127 ILE n 1 128 PHE n 1 129 LEU n 1 130 LYS n 1 131 HIS n 1 132 PRO n 1 133 GLU n 1 134 LEU n 1 135 ILE n 1 136 SER n 1 137 ALA n 1 138 TYR n 1 139 ILE n 1 140 PRO n 1 141 LYS n 1 142 TRP n 1 143 ILE n 1 144 ALA n 1 145 SER n 1 146 ASP n 1 147 ASN n 1 148 ILE n 1 149 TRP n 1 150 LEU n 1 151 GLN n 1 152 ARG n 1 153 ALA n 1 154 ALA n 1 155 ILE n 1 156 LEU n 1 157 PHE n 1 158 GLN n 1 159 LEU n 1 160 LYS n 1 161 TYR n 1 162 LYS n 1 163 GLN n 1 164 LYS n 1 165 MET n 1 166 ASP n 1 167 GLU n 1 168 GLU n 1 169 LEU n 1 170 LEU n 1 171 PHE n 1 172 TRP n 1 173 ILE n 1 174 ILE n 1 175 GLY n 1 176 GLN n 1 177 LEU n 1 178 HIS n 1 179 SER n 1 180 SER n 1 181 LYS n 1 182 GLU n 1 183 PHE n 1 184 PHE n 1 185 ILE n 1 186 GLN n 1 187 LYS n 1 188 ALA n 1 189 ILE n 1 190 GLY n 1 191 TRP n 1 192 VAL n 1 193 LEU n 1 194 ARG n 1 195 GLU n 1 196 TYR n 1 197 ALA n 1 198 LYS n 1 199 THR n 1 200 ASN n 1 201 PRO n 1 202 ASP n 1 203 VAL n 1 204 VAL n 1 205 TRP n 1 206 GLU n 1 207 TYR n 1 208 VAL n 1 209 GLN n 1 210 ASN n 1 211 ASN n 1 212 GLU n 1 213 LEU n 1 214 ALA n 1 215 PRO n 1 216 LEU n 1 217 SER n 1 218 LYS n 1 219 ARG n 1 220 GLU n 1 221 ALA n 1 222 ILE n 1 223 LYS n 1 224 HIS n 1 225 ILE n 1 226 LYS n 1 227 GLN n 1 228 ASN n 1 229 TYR n 1 230 GLY n 1 231 ILE n 1 232 ASN n 1 233 ASN n 1 234 GLU n 1 235 LYS n 1 236 ILE n 1 237 GLY n 1 238 GLU n 1 239 THR n 1 240 LEU n 1 241 SER n 2 1 DC n 2 2 DC n 2 3 DC n 2 4 DG n 2 5 DA n 2 6 DZM y 2 6 ORP y 2 7 DA n 2 8 DG n 2 9 DT n 2 10 DC n 2 11 DC n 2 12 DG n 3 1 DC n 3 2 DG n 3 3 DG n 3 4 DA n 3 5 DC n 3 6 DT n 3 7 DT n 3 8 DT n 3 9 DC n 3 10 DG n 3 11 DG n 3 12 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 241 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene IKE_03968 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus cereus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1396 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 14579 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HMS174 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pBG103 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 12 'synthetic construct' ? 32630 ? 3 1 sample 1 12 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP R8GWR7_BACCE R8GWR7 ? 1 ;MHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQAAA LDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLKYKQK MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNYGINNEKIGETLS ; 1 2 PDB 5CL4 5CL4 ? 2 ? 1 3 PDB 5CL4 5CL4 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5CL4 A 5 ? 241 ? R8GWR7 1 ? 237 ? 1 237 2 2 5CL4 B 1 ? 12 ? 5CL4 1 ? 12 ? 1 12 3 3 5CL4 C 1 ? 12 ? 5CL4 13 ? 24 ? 13 24 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5CL4 GLY A 1 ? UNP R8GWR7 ? ? 'expression tag' -3 1 1 5CL4 PRO A 2 ? UNP R8GWR7 ? ? 'expression tag' -2 2 1 5CL4 VAL A 3 ? UNP R8GWR7 ? ? 'expression tag' -1 3 1 5CL4 PRO A 4 ? UNP R8GWR7 ? ? 'expression tag' 0 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 54K non-polymer . '7-methyl-3H-imidazo[4,5-c]pyridin-4-amine' 3-deaza-3-methyladenine 'C7 H8 N4' 148.165 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DZM 'DNA linking' n 3-deaza-3-methyladenine '1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-7-methyl-1H-imidazo[4,5-c]pyridin-4-amine' 'C12 H17 N4 O6 P' 344.260 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 ORP saccharide . 2-DEOXY-5-PHOSPHONO-RIBOSE ? 'C5 H11 O7 P' 214.110 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5CL4 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.30 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '17% w/v PEG4000, 42 mM sodium acetate, pH 4.6, 85 mM ammonium acetate, 5% v/v glycerol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-08-15 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'diamond(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97872 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97872 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 25.790 _reflns.entry_id 5CL4 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.866 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 25843 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.900 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.300 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 18.427 _reflns.pdbx_netI_over_sigmaI 11.100 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.129 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.093 _reflns.pdbx_Rpim_I_all 0.039 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 136134 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.866 1.950 ? 3.216 ? ? ? 2586 ? 99.900 ? ? ? ? 0.590 ? ? ? ? ? ? ? ? 4.500 ? 0.967 ? ? 0.665 0.304 0 1 1 0.882 ? 1.950 2.030 ? ? ? ? ? 2595 ? 100.000 ? ? ? ? 0.455 ? ? ? ? ? ? ? ? 5.100 ? 1.002 ? ? 0.507 0.221 0 2 1 0.945 ? 2.030 2.120 ? ? ? ? ? 2546 ? 100.000 ? ? ? ? 0.320 ? ? ? ? ? ? ? ? 5.300 ? 1.098 ? ? 0.355 0.152 0 3 1 0.966 ? 2.120 2.230 ? ? ? ? ? 2562 ? 100.000 ? ? ? ? 0.228 ? ? ? ? ? ? ? ? 5.400 ? 1.173 ? ? 0.253 0.108 0 4 1 0.979 ? 2.230 2.370 ? ? ? ? ? 2574 ? 100.000 ? ? ? ? 0.172 ? ? ? ? ? ? ? ? 5.400 ? 1.223 ? ? 0.190 0.081 0 5 1 0.987 ? 2.370 2.550 ? ? ? ? ? 2593 ? 100.000 ? ? ? ? 0.130 ? ? ? ? ? ? ? ? 5.400 ? 1.203 ? ? 0.144 0.062 0 6 1 0.991 ? 2.550 2.810 ? ? ? ? ? 2574 ? 100.000 ? ? ? ? 0.101 ? ? ? ? ? ? ? ? 5.400 ? 1.242 ? ? 0.112 0.048 0 7 1 0.994 ? 2.810 3.210 ? ? ? ? ? 2611 ? 100.000 ? ? ? ? 0.087 ? ? ? ? ? ? ? ? 5.400 ? 1.206 ? ? 0.097 0.041 0 8 1 0.993 ? 3.210 4.050 ? ? ? ? ? 2585 ? 100.000 ? ? ? ? 0.073 ? ? ? ? ? ? ? ? 5.400 ? 1.195 ? ? 0.081 0.034 0 9 1 0.996 ? 4.050 50.000 ? ? ? ? ? 2617 ? 99.500 ? ? ? ? 0.044 ? ? ? ? ? ? ? ? 5.300 ? 0.940 ? ? 0.048 0.021 0 10 1 0.998 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 111.820 _refine.B_iso_mean 32.1974 _refine.B_iso_min 6.930 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5CL4 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.8660 _refine.ls_d_res_low 35.2750 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 25801 _refine.ls_number_reflns_R_free 1296 _refine.ls_number_reflns_R_work 24505 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.6000 _refine.ls_percent_reflns_R_free 5.0200 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1552 _refine.ls_R_factor_R_free 0.1963 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1531 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 3BVS' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.0900 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.8660 _refine_hist.d_res_low 35.2750 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 207 _refine_hist.number_atoms_total 2668 _refine_hist.pdbx_number_residues_total 255 _refine_hist.pdbx_B_iso_mean_ligand 10.35 _refine_hist.pdbx_B_iso_mean_solvent 38.56 _refine_hist.pdbx_number_atoms_protein 1951 _refine_hist.pdbx_number_atoms_nucleic_acid 499 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 2630 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.021 ? 3682 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.042 ? 396 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 371 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 19.364 ? 1011 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.8660 1.9407 . . 141 2650 97.0000 5.0520 . . 0.2665 . 0.2156 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9407 2.0291 . . 141 2721 100.0000 4.9266 . . 0.2561 . 0.1954 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0291 2.1360 . . 144 2714 100.0000 5.0385 . . 0.2376 . 0.1681 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1360 2.2698 . . 144 2726 100.0000 5.0174 . . 0.1938 . 0.1560 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2698 2.4451 . . 144 2724 100.0000 5.0209 . . 0.2213 . 0.1599 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4451 2.6910 . . 143 2750 100.0000 4.9430 . . 0.2408 . 0.1710 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6910 3.0802 . . 146 2704 100.0000 5.1228 . . 0.2043 . 0.1624 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0802 3.8800 . . 147 2745 100.0000 5.0830 . . 0.1790 . 0.1452 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.8800 35.2811 . . 146 2771 100.0000 5.0051 . . 0.1586 . 0.1294 . . . . . . . . . . # _struct.entry_id 5CL4 _struct.title ;Alkylpurine DNA glycosylase AlkD bound to DNA containing a 3-methyladenine analog or DNA containing an abasic site and a free nucleobase (71% substrate/29% product at 24 hours) ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5CL4 _struct_keywords.text 'DNA glycosylase, HEAT-like repeat, protein-DNA complex, HYDROLASE-DNA complex' _struct_keywords.pdbx_keywords HYDROLASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 HIS A 6 ? HIS A 19 ? HIS A 2 HIS A 15 1 ? 14 HELX_P HELX_P2 AA2 ASN A 21 ? MET A 32 ? ASN A 17 MET A 28 1 ? 12 HELX_P HELX_P3 AA3 GLN A 42 ? THR A 58 ? GLN A 38 THR A 54 1 ? 17 HELX_P HELX_P4 AA4 ASP A 61 ? LYS A 63 ? ASP A 57 LYS A 59 5 ? 3 HELX_P HELX_P5 AA5 ASP A 64 ? LEU A 75 ? ASP A 60 LEU A 71 1 ? 12 HELX_P HELX_P6 AA6 GLU A 77 ? TYR A 91 ? GLU A 73 TYR A 87 1 ? 15 HELX_P HELX_P7 AA7 LYS A 92 ? ILE A 95 ? LYS A 88 ILE A 91 5 ? 4 HELX_P HELX_P8 AA8 ASN A 96 ? THR A 98 ? ASN A 92 THR A 94 5 ? 3 HELX_P HELX_P9 AA9 HIS A 99 ? VAL A 108 ? HIS A 95 VAL A 104 1 ? 10 HELX_P HELX_P10 AB1 TRP A 112 ? VAL A 120 ? TRP A 108 VAL A 116 1 ? 9 HELX_P HELX_P11 AB2 THR A 122 ? HIS A 131 ? THR A 118 HIS A 127 1 ? 10 HELX_P HELX_P12 AB3 PRO A 132 ? ALA A 137 ? PRO A 128 ALA A 133 5 ? 6 HELX_P HELX_P13 AB4 TYR A 138 ? SER A 145 ? TYR A 134 SER A 141 1 ? 8 HELX_P HELX_P14 AB5 ASN A 147 ? PHE A 157 ? ASN A 143 PHE A 153 1 ? 11 HELX_P HELX_P15 AB6 TYR A 161 ? MET A 165 ? TYR A 157 MET A 161 5 ? 5 HELX_P HELX_P16 AB7 ASP A 166 ? HIS A 178 ? ASP A 162 HIS A 174 1 ? 13 HELX_P HELX_P17 AB8 GLU A 182 ? ALA A 197 ? GLU A 178 ALA A 193 1 ? 16 HELX_P HELX_P18 AB9 ASN A 200 ? ASN A 211 ? ASN A 196 ASN A 207 1 ? 12 HELX_P HELX_P19 AC1 ALA A 214 ? ILE A 222 ? ALA A 210 ILE A 218 1 ? 9 HELX_P HELX_P20 AC2 ILE A 225 ? GLY A 230 ? ILE A 221 GLY A 226 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DA 5 "O3'" ? ? ? 1_555 B DZM 6 P A ? B DA 5 B DZM 6 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale2 covale both ? B DA 5 "O3'" ? ? ? 1_555 B ORP 6 P B ? B DA 5 B ORP 6 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale3 covale both ? B DZM 6 "O3'" A ? ? 1_555 B DA 7 P ? ? B DZM 6 B DA 7 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale4 covale one ? B ORP 6 O3 B ? ? 1_555 B DA 7 P ? ? B ORP 6 B DA 7 1_555 ? ? ? ? ? ? ? 1.609 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 12 N1 ? ? B DC 1 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 12 O6 ? ? B DC 1 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 12 N2 ? ? B DC 1 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 11 N1 ? ? B DC 2 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 11 O6 ? ? B DC 2 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 2 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 10 N1 ? ? B DC 3 C DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 10 O6 ? ? B DC 3 C DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 10 N2 ? ? B DC 3 C DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 9 N3 ? ? B DG 4 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 9 O2 ? ? B DG 4 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 9 N4 ? ? B DG 4 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 5 C DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 8 O4 ? ? B DA 5 C DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DZM 6 N6 A ? ? 1_555 C DT 7 O2 A ? B DZM 6 C DT 19 1_555 ? ? ? ? ? ? 'DZM-DT MISPAIR' ? ? ? hydrog16 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 6 N3 A ? B DA 7 C DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 6 O4 A ? B DA 7 C DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 5 N3 ? ? B DG 8 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 5 O2 ? ? B DG 8 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 5 N4 ? ? B DG 8 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 9 C DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 9 C DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 10 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 10 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 10 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 2 N1 ? ? B DC 11 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 2 O6 ? ? B DC 11 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 2 N2 ? ? B DC 11 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 1 N3 ? ? B DG 12 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 1 O2 ? ? B DG 12 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 1 N4 ? ? B DG 12 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id 54K _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'binding site for residue 54K B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 TYR A 31 ? TYR A 27 . ? 1_555 ? 2 AC1 6 DA B 5 ? DA B 5 . ? 1_555 ? 3 AC1 6 DA B 7 ? DA B 7 . ? 1_555 ? 4 AC1 6 DT C 6 ? DT C 18 . ? 1_555 ? 5 AC1 6 DT C 7 ? DT C 19 . ? 1_555 ? 6 AC1 6 DT C 8 ? DT C 20 . ? 1_555 ? # _atom_sites.entry_id 5CL4 _atom_sites.fract_transf_matrix[1][1] 0.026146 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010957 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010689 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022600 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 PRO 2 -2 ? ? ? A . n A 1 3 VAL 3 -1 -1 VAL VAL A . n A 1 4 PRO 4 0 0 PRO PRO A . n A 1 5 MET 5 1 1 MET MET A . n A 1 6 HIS 6 2 2 HIS HIS A . n A 1 7 PRO 7 3 3 PRO PRO A . n A 1 8 PHE 8 4 4 PHE PHE A . n A 1 9 VAL 9 5 5 VAL VAL A . n A 1 10 LYS 10 6 6 LYS LYS A . n A 1 11 ALA 11 7 7 ALA ALA A . n A 1 12 LEU 12 8 8 LEU LEU A . n A 1 13 GLN 13 9 9 GLN GLN A . n A 1 14 GLU 14 10 10 GLU GLU A . n A 1 15 HIS 15 11 11 HIS HIS A . n A 1 16 PHE 16 12 12 PHE PHE A . n A 1 17 THR 17 13 13 THR THR A . n A 1 18 ALA 18 14 14 ALA ALA A . n A 1 19 HIS 19 15 15 HIS HIS A . n A 1 20 GLN 20 16 16 GLN GLN A . n A 1 21 ASN 21 17 17 ASN ASN A . n A 1 22 PRO 22 18 18 PRO PRO A . n A 1 23 GLU 23 19 19 GLU GLU A . n A 1 24 LYS 24 20 20 LYS LYS A . n A 1 25 ALA 25 21 21 ALA ALA A . n A 1 26 GLU 26 22 22 GLU GLU A . n A 1 27 PRO 27 23 23 PRO PRO A . n A 1 28 MET 28 24 24 MET MET A . n A 1 29 ALA 29 25 25 ALA ALA A . n A 1 30 ARG 30 26 26 ARG ARG A . n A 1 31 TYR 31 27 27 TYR TYR A . n A 1 32 MET 32 28 28 MET MET A . n A 1 33 LYS 33 29 29 LYS LYS A . n A 1 34 ASN 34 30 30 ASN ASN A . n A 1 35 HIS 35 31 31 HIS HIS A . n A 1 36 PHE 36 32 32 PHE PHE A . n A 1 37 LEU 37 33 33 LEU LEU A . n A 1 38 PHE 38 34 34 PHE PHE A . n A 1 39 LEU 39 35 35 LEU LEU A . n A 1 40 GLY 40 36 36 GLY GLY A . n A 1 41 ILE 41 37 37 ILE ILE A . n A 1 42 GLN 42 38 38 GLN GLN A . n A 1 43 THR 43 39 39 THR THR A . n A 1 44 PRO 44 40 40 PRO PRO A . n A 1 45 GLU 45 41 41 GLU GLU A . n A 1 46 ARG 46 42 42 ARG ARG A . n A 1 47 ARG 47 43 43 ARG ARG A . n A 1 48 GLN 48 44 44 GLN GLN A . n A 1 49 LEU 49 45 45 LEU LEU A . n A 1 50 LEU 50 46 46 LEU LEU A . n A 1 51 LYS 51 47 47 LYS LYS A . n A 1 52 ASP 52 48 48 ASP ASP A . n A 1 53 ILE 53 49 49 ILE ILE A . n A 1 54 ILE 54 50 50 ILE ILE A . n A 1 55 GLN 55 51 51 GLN GLN A . n A 1 56 ILE 56 52 52 ILE ILE A . n A 1 57 HIS 57 53 53 HIS HIS A . n A 1 58 THR 58 54 54 THR THR A . n A 1 59 LEU 59 55 55 LEU LEU A . n A 1 60 PRO 60 56 56 PRO PRO A . n A 1 61 ASP 61 57 57 ASP ASP A . n A 1 62 GLN 62 58 58 GLN GLN A . n A 1 63 LYS 63 59 59 LYS LYS A . n A 1 64 ASP 64 60 60 ASP ASP A . n A 1 65 PHE 65 61 61 PHE PHE A . n A 1 66 GLN 66 62 62 GLN GLN A . n A 1 67 ILE 67 63 63 ILE ILE A . n A 1 68 ILE 68 64 64 ILE ILE A . n A 1 69 ILE 69 65 65 ILE ILE A . n A 1 70 ARG 70 66 66 ARG ARG A . n A 1 71 GLU 71 67 67 GLU GLU A . n A 1 72 LEU 72 68 68 LEU LEU A . n A 1 73 TRP 73 69 69 TRP TRP A . n A 1 74 ASP 74 70 70 ASP ASP A . n A 1 75 LEU 75 71 71 LEU LEU A . n A 1 76 PRO 76 72 72 PRO PRO A . n A 1 77 GLU 77 73 73 GLU GLU A . n A 1 78 ARG 78 74 74 ARG ARG A . n A 1 79 GLU 79 75 75 GLU GLU A . n A 1 80 PHE 80 76 76 PHE PHE A . n A 1 81 GLN 81 77 77 GLN GLN A . n A 1 82 ALA 82 78 78 ALA ALA A . n A 1 83 ALA 83 79 79 ALA ALA A . n A 1 84 ALA 84 80 80 ALA ALA A . n A 1 85 LEU 85 81 81 LEU LEU A . n A 1 86 ASP 86 82 82 ASP ASP A . n A 1 87 ILE 87 83 83 ILE ILE A . n A 1 88 MET 88 84 84 MET MET A . n A 1 89 GLN 89 85 85 GLN GLN A . n A 1 90 LYS 90 86 86 LYS LYS A . n A 1 91 TYR 91 87 87 TYR TYR A . n A 1 92 LYS 92 88 88 LYS LYS A . n A 1 93 LYS 93 89 89 LYS LYS A . n A 1 94 HIS 94 90 90 HIS HIS A . n A 1 95 ILE 95 91 91 ILE ILE A . n A 1 96 ASN 96 92 92 ASN ASN A . n A 1 97 GLU 97 93 93 GLU GLU A . n A 1 98 THR 98 94 94 THR THR A . n A 1 99 HIS 99 95 95 HIS HIS A . n A 1 100 ILE 100 96 96 ILE ILE A . n A 1 101 PRO 101 97 97 PRO PRO A . n A 1 102 PHE 102 98 98 PHE PHE A . n A 1 103 LEU 103 99 99 LEU LEU A . n A 1 104 GLU 104 100 100 GLU GLU A . n A 1 105 GLU 105 101 101 GLU GLU A . n A 1 106 LEU 106 102 102 LEU LEU A . n A 1 107 ILE 107 103 103 ILE ILE A . n A 1 108 VAL 108 104 104 VAL VAL A . n A 1 109 THR 109 105 105 THR THR A . n A 1 110 LYS 110 106 106 LYS LYS A . n A 1 111 SER 111 107 107 SER SER A . n A 1 112 TRP 112 108 108 TRP TRP A . n A 1 113 TRP 113 109 109 TRP TRP A . n A 1 114 ASP 114 110 110 ASP ASP A . n A 1 115 SER 115 111 111 SER SER A . n A 1 116 VAL 116 112 112 VAL VAL A . n A 1 117 ASP 117 113 113 ASP ASP A . n A 1 118 SER 118 114 114 SER SER A . n A 1 119 ILE 119 115 115 ILE ILE A . n A 1 120 VAL 120 116 116 VAL VAL A . n A 1 121 PRO 121 117 117 PRO PRO A . n A 1 122 THR 122 118 118 THR THR A . n A 1 123 PHE 123 119 119 PHE PHE A . n A 1 124 LEU 124 120 120 LEU LEU A . n A 1 125 GLY 125 121 121 GLY GLY A . n A 1 126 ASP 126 122 122 ASP ASP A . n A 1 127 ILE 127 123 123 ILE ILE A . n A 1 128 PHE 128 124 124 PHE PHE A . n A 1 129 LEU 129 125 125 LEU LEU A . n A 1 130 LYS 130 126 126 LYS LYS A . n A 1 131 HIS 131 127 127 HIS HIS A . n A 1 132 PRO 132 128 128 PRO PRO A . n A 1 133 GLU 133 129 129 GLU GLU A . n A 1 134 LEU 134 130 130 LEU LEU A . n A 1 135 ILE 135 131 131 ILE ILE A . n A 1 136 SER 136 132 132 SER SER A . n A 1 137 ALA 137 133 133 ALA ALA A . n A 1 138 TYR 138 134 134 TYR TYR A . n A 1 139 ILE 139 135 135 ILE ILE A . n A 1 140 PRO 140 136 136 PRO PRO A . n A 1 141 LYS 141 137 137 LYS LYS A . n A 1 142 TRP 142 138 138 TRP TRP A . n A 1 143 ILE 143 139 139 ILE ILE A . n A 1 144 ALA 144 140 140 ALA ALA A . n A 1 145 SER 145 141 141 SER SER A . n A 1 146 ASP 146 142 142 ASP ASP A . n A 1 147 ASN 147 143 143 ASN ASN A . n A 1 148 ILE 148 144 144 ILE ILE A . n A 1 149 TRP 149 145 145 TRP TRP A . n A 1 150 LEU 150 146 146 LEU LEU A . n A 1 151 GLN 151 147 147 GLN GLN A . n A 1 152 ARG 152 148 148 ARG ARG A . n A 1 153 ALA 153 149 149 ALA ALA A . n A 1 154 ALA 154 150 150 ALA ALA A . n A 1 155 ILE 155 151 151 ILE ILE A . n A 1 156 LEU 156 152 152 LEU LEU A . n A 1 157 PHE 157 153 153 PHE PHE A . n A 1 158 GLN 158 154 154 GLN GLN A . n A 1 159 LEU 159 155 155 LEU LEU A . n A 1 160 LYS 160 156 156 LYS LYS A . n A 1 161 TYR 161 157 157 TYR TYR A . n A 1 162 LYS 162 158 158 LYS LYS A . n A 1 163 GLN 163 159 159 GLN GLN A . n A 1 164 LYS 164 160 160 LYS LYS A . n A 1 165 MET 165 161 161 MET MET A . n A 1 166 ASP 166 162 162 ASP ASP A . n A 1 167 GLU 167 163 163 GLU GLU A . n A 1 168 GLU 168 164 164 GLU GLU A . n A 1 169 LEU 169 165 165 LEU LEU A . n A 1 170 LEU 170 166 166 LEU LEU A . n A 1 171 PHE 171 167 167 PHE PHE A . n A 1 172 TRP 172 168 168 TRP TRP A . n A 1 173 ILE 173 169 169 ILE ILE A . n A 1 174 ILE 174 170 170 ILE ILE A . n A 1 175 GLY 175 171 171 GLY GLY A . n A 1 176 GLN 176 172 172 GLN GLN A . n A 1 177 LEU 177 173 173 LEU LEU A . n A 1 178 HIS 178 174 174 HIS HIS A . n A 1 179 SER 179 175 175 SER SER A . n A 1 180 SER 180 176 176 SER SER A . n A 1 181 LYS 181 177 177 LYS LYS A . n A 1 182 GLU 182 178 178 GLU GLU A . n A 1 183 PHE 183 179 179 PHE PHE A . n A 1 184 PHE 184 180 180 PHE PHE A . n A 1 185 ILE 185 181 181 ILE ILE A . n A 1 186 GLN 186 182 182 GLN GLN A . n A 1 187 LYS 187 183 183 LYS LYS A . n A 1 188 ALA 188 184 184 ALA ALA A . n A 1 189 ILE 189 185 185 ILE ILE A . n A 1 190 GLY 190 186 186 GLY GLY A . n A 1 191 TRP 191 187 187 TRP TRP A . n A 1 192 VAL 192 188 188 VAL VAL A . n A 1 193 LEU 193 189 189 LEU LEU A . n A 1 194 ARG 194 190 190 ARG ARG A . n A 1 195 GLU 195 191 191 GLU GLU A . n A 1 196 TYR 196 192 192 TYR TYR A . n A 1 197 ALA 197 193 193 ALA ALA A . n A 1 198 LYS 198 194 194 LYS LYS A . n A 1 199 THR 199 195 195 THR THR A . n A 1 200 ASN 200 196 196 ASN ASN A . n A 1 201 PRO 201 197 197 PRO PRO A . n A 1 202 ASP 202 198 198 ASP ASP A . n A 1 203 VAL 203 199 199 VAL VAL A . n A 1 204 VAL 204 200 200 VAL VAL A . n A 1 205 TRP 205 201 201 TRP TRP A . n A 1 206 GLU 206 202 202 GLU GLU A . n A 1 207 TYR 207 203 203 TYR TYR A . n A 1 208 VAL 208 204 204 VAL VAL A . n A 1 209 GLN 209 205 205 GLN GLN A . n A 1 210 ASN 210 206 206 ASN ASN A . n A 1 211 ASN 211 207 207 ASN ASN A . n A 1 212 GLU 212 208 208 GLU GLU A . n A 1 213 LEU 213 209 209 LEU LEU A . n A 1 214 ALA 214 210 210 ALA ALA A . n A 1 215 PRO 215 211 211 PRO PRO A . n A 1 216 LEU 216 212 212 LEU LEU A . n A 1 217 SER 217 213 213 SER SER A . n A 1 218 LYS 218 214 214 LYS LYS A . n A 1 219 ARG 219 215 215 ARG ARG A . n A 1 220 GLU 220 216 216 GLU GLU A . n A 1 221 ALA 221 217 217 ALA ALA A . n A 1 222 ILE 222 218 218 ILE ILE A . n A 1 223 LYS 223 219 219 LYS LYS A . n A 1 224 HIS 224 220 220 HIS HIS A . n A 1 225 ILE 225 221 221 ILE ILE A . n A 1 226 LYS 226 222 222 LYS LYS A . n A 1 227 GLN 227 223 223 GLN GLN A . n A 1 228 ASN 228 224 224 ASN ASN A . n A 1 229 TYR 229 225 225 TYR TYR A . n A 1 230 GLY 230 226 226 GLY GLY A . n A 1 231 ILE 231 227 227 ILE ILE A . n A 1 232 ASN 232 228 228 ASN ASN A . n A 1 233 ASN 233 229 229 ASN ASN A . n A 1 234 GLU 234 230 ? ? ? A . n A 1 235 LYS 235 231 ? ? ? A . n A 1 236 ILE 236 232 ? ? ? A . n A 1 237 GLY 237 233 ? ? ? A . n A 1 238 GLU 238 234 ? ? ? A . n A 1 239 THR 239 235 ? ? ? A . n A 1 240 LEU 240 236 ? ? ? A . n A 1 241 SER 241 237 ? ? ? A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DA 5 5 5 DA DA B . n B 2 6 DZM 6 6 6 DZM DZM B . y B 2 6 ORP 6 6 6 ORP ORP B . y B 2 7 DA 7 7 7 DA DA B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DC 10 10 10 DC DC B . n B 2 11 DC 11 11 11 DC DC B . n B 2 12 DG 12 12 12 DG DG B . n C 3 1 DC 1 13 13 DC DC C . n C 3 2 DG 2 14 14 DG DG C . n C 3 3 DG 3 15 15 DG DG C . n C 3 4 DA 4 16 16 DA DA C . n C 3 5 DC 5 17 17 DC DC C . n C 3 6 DT 6 18 18 DT DT C . n C 3 7 DT 7 19 19 DT DT C . n C 3 8 DT 8 20 20 DT DT C . n C 3 9 DC 9 21 21 DC DC C . n C 3 10 DG 10 22 22 DG DG C . n C 3 11 DG 11 23 23 DG DG C . n C 3 12 DG 12 24 24 DG DG C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 54K 1 101 1 54K UNK B . E 5 HOH 1 301 57 HOH HOH A . E 5 HOH 2 302 118 HOH HOH A . E 5 HOH 3 303 246 HOH HOH A . E 5 HOH 4 304 127 HOH HOH A . E 5 HOH 5 305 255 HOH HOH A . E 5 HOH 6 306 30 HOH HOH A . E 5 HOH 7 307 80 HOH HOH A . E 5 HOH 8 308 106 HOH HOH A . E 5 HOH 9 309 86 HOH HOH A . E 5 HOH 10 310 125 HOH HOH A . E 5 HOH 11 311 90 HOH HOH A . E 5 HOH 12 312 98 HOH HOH A . E 5 HOH 13 313 40 HOH HOH A . E 5 HOH 14 314 9 HOH HOH A . E 5 HOH 15 315 28 HOH HOH A . E 5 HOH 16 316 25 HOH HOH A . E 5 HOH 17 317 254 HOH HOH A . E 5 HOH 18 318 22 HOH HOH A . E 5 HOH 19 319 78 HOH HOH A . E 5 HOH 20 320 81 HOH HOH A . E 5 HOH 21 321 229 HOH HOH A . E 5 HOH 22 322 171 HOH HOH A . E 5 HOH 23 323 39 HOH HOH A . E 5 HOH 24 324 36 HOH HOH A . E 5 HOH 25 325 29 HOH HOH A . E 5 HOH 26 326 5 HOH HOH A . E 5 HOH 27 327 15 HOH HOH A . E 5 HOH 28 328 44 HOH HOH A . E 5 HOH 29 329 215 HOH HOH A . E 5 HOH 30 330 220 HOH HOH A . E 5 HOH 31 331 248 HOH HOH A . E 5 HOH 32 332 226 HOH HOH A . E 5 HOH 33 333 164 HOH HOH A . E 5 HOH 34 334 52 HOH HOH A . E 5 HOH 35 335 4 HOH HOH A . E 5 HOH 36 336 18 HOH HOH A . E 5 HOH 37 337 59 HOH HOH A . E 5 HOH 38 338 13 HOH HOH A . E 5 HOH 39 339 126 HOH HOH A . E 5 HOH 40 340 121 HOH HOH A . E 5 HOH 41 341 10 HOH HOH A . E 5 HOH 42 342 65 HOH HOH A . E 5 HOH 43 343 214 HOH HOH A . E 5 HOH 44 344 136 HOH HOH A . E 5 HOH 45 345 47 HOH HOH A . E 5 HOH 46 346 74 HOH HOH A . E 5 HOH 47 347 185 HOH HOH A . E 5 HOH 48 348 1 HOH HOH A . E 5 HOH 49 349 38 HOH HOH A . E 5 HOH 50 350 26 HOH HOH A . E 5 HOH 51 351 244 HOH HOH A . E 5 HOH 52 352 116 HOH HOH A . E 5 HOH 53 353 223 HOH HOH A . E 5 HOH 54 354 50 HOH HOH A . E 5 HOH 55 355 157 HOH HOH A . E 5 HOH 56 356 107 HOH HOH A . E 5 HOH 57 357 88 HOH HOH A . E 5 HOH 58 358 85 HOH HOH A . E 5 HOH 59 359 3 HOH HOH A . E 5 HOH 60 360 23 HOH HOH A . E 5 HOH 61 361 67 HOH HOH A . E 5 HOH 62 362 53 HOH HOH A . E 5 HOH 63 363 178 HOH HOH A . E 5 HOH 64 364 113 HOH HOH A . E 5 HOH 65 365 236 HOH HOH A . E 5 HOH 66 366 11 HOH HOH A . E 5 HOH 67 367 77 HOH HOH A . E 5 HOH 68 368 58 HOH HOH A . E 5 HOH 69 369 115 HOH HOH A . E 5 HOH 70 370 27 HOH HOH A . E 5 HOH 71 371 8 HOH HOH A . E 5 HOH 72 372 114 HOH HOH A . E 5 HOH 73 373 6 HOH HOH A . E 5 HOH 74 374 128 HOH HOH A . E 5 HOH 75 375 193 HOH HOH A . E 5 HOH 76 376 7 HOH HOH A . E 5 HOH 77 377 43 HOH HOH A . E 5 HOH 78 378 32 HOH HOH A . E 5 HOH 79 379 19 HOH HOH A . E 5 HOH 80 380 182 HOH HOH A . E 5 HOH 81 381 84 HOH HOH A . E 5 HOH 82 382 41 HOH HOH A . E 5 HOH 83 383 241 HOH HOH A . E 5 HOH 84 384 217 HOH HOH A . E 5 HOH 85 385 176 HOH HOH A . E 5 HOH 86 386 55 HOH HOH A . E 5 HOH 87 387 156 HOH HOH A . E 5 HOH 88 388 75 HOH HOH A . E 5 HOH 89 389 48 HOH HOH A . E 5 HOH 90 390 222 HOH HOH A . E 5 HOH 91 391 191 HOH HOH A . E 5 HOH 92 392 237 HOH HOH A . E 5 HOH 93 393 184 HOH HOH A . E 5 HOH 94 394 139 HOH HOH A . E 5 HOH 95 395 24 HOH HOH A . E 5 HOH 96 396 45 HOH HOH A . E 5 HOH 97 397 173 HOH HOH A . E 5 HOH 98 398 37 HOH HOH A . E 5 HOH 99 399 227 HOH HOH A . E 5 HOH 100 400 219 HOH HOH A . E 5 HOH 101 401 110 HOH HOH A . E 5 HOH 102 402 66 HOH HOH A . E 5 HOH 103 403 92 HOH HOH A . E 5 HOH 104 404 89 HOH HOH A . E 5 HOH 105 405 71 HOH HOH A . E 5 HOH 106 406 101 HOH HOH A . E 5 HOH 107 407 138 HOH HOH A . E 5 HOH 108 408 62 HOH HOH A . E 5 HOH 109 409 68 HOH HOH A . E 5 HOH 110 410 76 HOH HOH A . E 5 HOH 111 411 69 HOH HOH A . E 5 HOH 112 412 12 HOH HOH A . E 5 HOH 113 413 46 HOH HOH A . E 5 HOH 114 414 159 HOH HOH A . E 5 HOH 115 415 122 HOH HOH A . E 5 HOH 116 416 17 HOH HOH A . E 5 HOH 117 417 234 HOH HOH A . E 5 HOH 118 418 21 HOH HOH A . E 5 HOH 119 419 112 HOH HOH A . E 5 HOH 120 420 96 HOH HOH A . E 5 HOH 121 421 216 HOH HOH A . E 5 HOH 122 422 82 HOH HOH A . E 5 HOH 123 423 154 HOH HOH A . E 5 HOH 124 424 33 HOH HOH A . E 5 HOH 125 425 232 HOH HOH A . E 5 HOH 126 426 235 HOH HOH A . E 5 HOH 127 427 91 HOH HOH A . E 5 HOH 128 428 167 HOH HOH A . E 5 HOH 129 429 242 HOH HOH A . E 5 HOH 130 430 225 HOH HOH A . E 5 HOH 131 431 224 HOH HOH A . E 5 HOH 132 432 221 HOH HOH A . E 5 HOH 133 433 51 HOH HOH A . E 5 HOH 134 434 105 HOH HOH A . E 5 HOH 135 435 172 HOH HOH A . E 5 HOH 136 436 153 HOH HOH A . E 5 HOH 137 437 54 HOH HOH A . E 5 HOH 138 438 31 HOH HOH A . E 5 HOH 139 439 177 HOH HOH A . E 5 HOH 140 440 207 HOH HOH A . E 5 HOH 141 441 34 HOH HOH A . E 5 HOH 142 442 239 HOH HOH A . E 5 HOH 143 443 119 HOH HOH A . E 5 HOH 144 444 64 HOH HOH A . E 5 HOH 145 445 120 HOH HOH A . E 5 HOH 146 446 195 HOH HOH A . E 5 HOH 147 447 247 HOH HOH A . E 5 HOH 148 448 72 HOH HOH A . E 5 HOH 149 449 70 HOH HOH A . E 5 HOH 150 450 257 HOH HOH A . E 5 HOH 151 451 245 HOH HOH A . E 5 HOH 152 452 94 HOH HOH A . E 5 HOH 153 453 79 HOH HOH A . E 5 HOH 154 454 204 HOH HOH A . E 5 HOH 155 455 233 HOH HOH A . E 5 HOH 156 456 256 HOH HOH A . E 5 HOH 157 457 181 HOH HOH A . E 5 HOH 158 458 99 HOH HOH A . E 5 HOH 159 459 203 HOH HOH A . E 5 HOH 160 460 117 HOH HOH A . E 5 HOH 161 461 228 HOH HOH A . E 5 HOH 162 462 93 HOH HOH A . E 5 HOH 163 463 230 HOH HOH A . E 5 HOH 164 464 238 HOH HOH A . E 5 HOH 165 465 263 HOH HOH A . E 5 HOH 166 466 218 HOH HOH A . E 5 HOH 167 467 63 HOH HOH A . E 5 HOH 168 468 61 HOH HOH A . E 5 HOH 169 469 60 HOH HOH A . E 5 HOH 170 470 168 HOH HOH A . E 5 HOH 171 471 151 HOH HOH A . E 5 HOH 172 472 194 HOH HOH A . E 5 HOH 173 473 197 HOH HOH A . E 5 HOH 174 474 205 HOH HOH A . E 5 HOH 175 475 243 HOH HOH A . F 5 HOH 1 201 202 HOH HOH B . F 5 HOH 2 202 104 HOH HOH B . F 5 HOH 3 203 261 HOH HOH B . F 5 HOH 4 204 190 HOH HOH B . F 5 HOH 5 205 140 HOH HOH B . F 5 HOH 6 206 16 HOH HOH B . F 5 HOH 7 207 259 HOH HOH B . F 5 HOH 8 208 213 HOH HOH B . F 5 HOH 9 209 210 HOH HOH B . F 5 HOH 10 210 209 HOH HOH B . F 5 HOH 11 211 201 HOH HOH B . F 5 HOH 12 212 199 HOH HOH B . F 5 HOH 13 213 212 HOH HOH B . F 5 HOH 14 214 192 HOH HOH B . F 5 HOH 15 215 249 HOH HOH B . F 5 HOH 16 216 262 HOH HOH B . G 5 HOH 1 101 189 HOH HOH C . G 5 HOH 2 102 187 HOH HOH C . G 5 HOH 3 103 208 HOH HOH C . G 5 HOH 4 104 206 HOH HOH C . G 5 HOH 5 105 198 HOH HOH C . G 5 HOH 6 106 251 HOH HOH C . G 5 HOH 7 107 211 HOH HOH C . G 5 HOH 8 108 253 HOH HOH C . G 5 HOH 9 109 252 HOH HOH C . G 5 HOH 10 110 260 HOH HOH C . G 5 HOH 11 111 200 HOH HOH C . G 5 HOH 12 112 258 HOH HOH C . G 5 HOH 13 113 174 HOH HOH C . G 5 HOH 14 114 250 HOH HOH C . G 5 HOH 15 115 35 HOH HOH C . G 5 HOH 16 116 131 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3110 ? 1 MORE -18 ? 1 'SSA (A^2)' 14990 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-10-28 2 'Structure model' 1 1 2015-11-18 3 'Structure model' 1 2 2015-11-25 4 'Structure model' 1 3 2017-09-06 5 'Structure model' 1 4 2019-11-27 6 'Structure model' 1 5 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Author supporting evidence' 7 6 'Structure model' 'Data collection' 8 6 'Structure model' 'Database references' 9 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation 2 4 'Structure model' pdbx_audit_support 3 4 'Structure model' pdbx_struct_oper_list 4 5 'Structure model' pdbx_audit_support 5 6 'Structure model' chem_comp_atom 6 6 'Structure model' chem_comp_bond 7 6 'Structure model' database_2 8 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.journal_id_CSD' 2 4 'Structure model' '_pdbx_audit_support.funding_organization' 3 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 4 5 'Structure model' '_pdbx_audit_support.funding_organization' 5 6 'Structure model' '_database_2.pdbx_DOI' 6 6 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 45.4801 20.9622 65.5998 0.3744 ? -0.0137 ? 0.0258 ? 0.2233 ? -0.0071 ? 0.2955 ? 2.9213 ? -2.1779 ? 1.2626 ? 9.4049 ? -7.2660 ? 7.3294 ? -0.0586 ? 0.0154 ? 0.5099 ? 0.3764 ? -0.1337 ? -0.0839 ? -0.7797 ? -0.0258 ? 0.1454 ? 2 'X-RAY DIFFRACTION' ? refined 57.6470 6.8108 70.4394 0.2217 ? 0.0123 ? -0.0306 ? 0.2140 ? 0.0132 ? 0.1563 ? 6.2971 ? -0.5066 ? -5.5591 ? 2.6189 ? 1.7819 ? 6.5442 ? -0.1215 ? -0.5396 ? -0.1503 ? 0.2218 ? 0.0547 ? -0.0663 ? 0.1045 ? 0.4082 ? 0.0792 ? 3 'X-RAY DIFFRACTION' ? refined 39.6726 12.7854 62.1048 0.2571 ? -0.0151 ? -0.0221 ? 0.2538 ? -0.0261 ? 0.2538 ? 5.6003 ? -2.7599 ? 2.7488 ? 3.8290 ? -5.3113 ? 7.7555 ? 0.1618 ? -0.0874 ? -0.0501 ? -0.0121 ? 0.2587 ? 0.5208 ? -0.0931 ? -0.3538 ? -0.4060 ? 4 'X-RAY DIFFRACTION' ? refined 50.3420 20.3211 55.6022 0.2829 ? -0.0015 ? 0.0415 ? 0.2028 ? 0.0053 ? 0.1960 ? 4.5373 ? -4.3054 ? 6.6181 ? 6.5958 ? -5.7916 ? 9.8626 ? -0.2027 ? -0.0231 ? 0.2682 ? 0.1991 ? 0.0270 ? -0.1364 ? -0.7912 ? 0.0939 ? 0.3278 ? 5 'X-RAY DIFFRACTION' ? refined 55.1145 10.2388 47.0210 0.1955 ? -0.0242 ? 0.0075 ? 0.1506 ? 0.0018 ? 0.1568 ? 0.4040 ? -0.4278 ? -0.6766 ? 1.0147 ? 0.3911 ? 3.8283 ? 0.0149 ? 0.0011 ? -0.0077 ? -0.0491 ? -0.0087 ? 0.0307 ? -0.0462 ? -0.1037 ? -0.0010 ? 6 'X-RAY DIFFRACTION' ? refined 58.7897 0.0031 43.1597 0.1950 ? -0.0029 ? 0.0011 ? 0.1457 ? 0.0130 ? 0.1421 ? 6.6081 ? 2.7176 ? 3.4355 ? 6.5272 ? 3.6094 ? 8.7585 ? -0.0114 ? 0.1492 ? -0.1606 ? -0.2779 ? 0.0785 ? 0.2748 ? 0.1106 ? -0.1424 ? -0.0929 ? 7 'X-RAY DIFFRACTION' ? refined 69.0219 -2.3125 40.3711 0.2072 ? 0.0160 ? 0.0266 ? 0.1854 ? -0.0120 ? 0.1520 ? 2.2193 ? -0.2232 ? 3.7576 ? 4.8581 ? -1.5127 ? 8.8920 ? 0.1608 ? 0.0584 ? -0.1641 ? -0.3695 ? -0.0555 ? 0.0575 ? 0.1466 ? 0.2437 ? -0.1770 ? 8 'X-RAY DIFFRACTION' ? refined 64.8909 -13.3018 45.9596 0.2558 ? -0.0197 ? 0.0270 ? 0.1785 ? 0.0154 ? 0.1890 ? 1.5283 ? -0.1866 ? -0.0314 ? 5.2211 ? 1.5511 ? 1.7333 ? -0.0291 ? -0.0266 ? -0.2702 ? 0.0014 ? -0.0266 ? 0.0628 ? 0.2820 ? -0.0096 ? 0.0668 ? 9 'X-RAY DIFFRACTION' ? refined 59.5946 -9.9539 62.6733 0.2429 ? 0.0658 ? 0.0434 ? 0.3859 ? 0.1074 ? 0.4087 ? 0.1110 ? -0.6130 ? -0.1485 ? 3.3383 ? 0.6480 ? 3.0310 ? -0.3529 ? -0.7994 ? -0.9684 ? 0.2083 ? 0.3030 ? -0.0757 ? 0.1000 ? -0.1280 ? -0.0804 ? 10 'X-RAY DIFFRACTION' ? refined 65.6443 -14.1653 64.2306 0.2058 ? 0.0416 ? 0.0861 ? 0.6247 ? 0.2759 ? 0.7013 ? 5.1937 ? -2.0118 ? -0.8878 ? 3.8432 ? 1.0005 ? 0.2938 ? -0.5358 ? 0.1450 ? -0.8566 ? 0.3782 ? 0.3769 ? 0.4549 ? 0.2129 ? 0.1560 ? -0.1434 ? 11 'X-RAY DIFFRACTION' ? refined 49.5771 -6.0020 62.0490 0.2854 ? 0.0844 ? 0.0068 ? 0.4360 ? 0.0118 ? 0.3529 ? 6.6912 ? 2.0391 ? -1.2287 ? 8.8121 ? 0.2239 ? 5.0028 ? -0.5530 ? -0.4443 ? -0.7664 ? -0.3154 ? 0.7242 ? 0.8213 ? -0.8681 ? -1.1085 ? 0.0713 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid -1 through 15 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 16 through 38 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 39 through 57 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 58 through 73 ) ; 5 'X-RAY DIFFRACTION' 5 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 74 through 143 ) ; 6 'X-RAY DIFFRACTION' 6 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 144 through 162 ) ; 7 'X-RAY DIFFRACTION' 7 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 163 through 178 ) ; 8 'X-RAY DIFFRACTION' 8 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 179 through 229 ) ; 9 'X-RAY DIFFRACTION' 9 ? ? B 0 ? ? B 0 ? ;chain 'B' and (resid 1 through 12 ) ; 10 'X-RAY DIFFRACTION' 10 ? ? C 0 ? ? C 0 ? ;chain 'C' and (resid 1 through 6 ) ; 11 'X-RAY DIFFRACTION' 11 ? ? C 0 ? ? C 0 ? ;chain 'C' and (resid 7 through 12 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 6 # _pdbx_entry_details.compound_details ? _pdbx_entry_details.entry_id 5CL4 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'Chain B contains microheterogeneity at position 6 (DZM versus ORP).' _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DG 14 ? ? "C1'" C DG 14 ? ? N9 C DG 14 ? ? 110.36 108.30 2.06 0.30 N 2 1 "O4'" C DC 17 ? ? "C1'" C DC 17 ? ? N1 C DC 17 ? ? 110.36 108.30 2.06 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 54 ? ? 63.69 158.98 2 1 THR A 118 ? ? -93.67 -72.93 3 1 TYR A 134 ? ? -132.82 -46.34 4 1 LYS A 158 ? ? 51.83 -119.74 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A PRO -2 ? A PRO 2 3 1 Y 1 A GLU 230 ? A GLU 234 4 1 Y 1 A LYS 231 ? A LYS 235 5 1 Y 1 A ILE 232 ? A ILE 236 6 1 Y 1 A GLY 233 ? A GLY 237 7 1 Y 1 A GLU 234 ? A GLU 238 8 1 Y 1 A THR 235 ? A THR 239 9 1 Y 1 A LEU 236 ? A LEU 240 10 1 Y 1 A SER 237 ? A SER 241 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 54K N1 N Y N 1 54K C2 C Y N 2 54K C3 C Y N 3 54K C3M C N N 4 54K C4 C Y N 5 54K C5 C Y N 6 54K C6 C Y N 7 54K N6 N N N 8 54K N7 N Y N 9 54K C8 C Y N 10 54K N9 N Y N 11 54K H1 H N N 12 54K H2 H N N 13 54K H3 H N N 14 54K H4 H N N 15 54K H5 H N N 16 54K H6 H N N 17 54K H7 H N N 18 54K H8 H N N 19 ALA N N N N 20 ALA CA C N S 21 ALA C C N N 22 ALA O O N N 23 ALA CB C N N 24 ALA OXT O N N 25 ALA H H N N 26 ALA H2 H N N 27 ALA HA H N N 28 ALA HB1 H N N 29 ALA HB2 H N N 30 ALA HB3 H N N 31 ALA HXT H N N 32 ARG N N N N 33 ARG CA C N S 34 ARG C C N N 35 ARG O O N N 36 ARG CB C N N 37 ARG CG C N N 38 ARG CD C N N 39 ARG NE N N N 40 ARG CZ C N N 41 ARG NH1 N N N 42 ARG NH2 N N N 43 ARG OXT O N N 44 ARG H H N N 45 ARG H2 H N N 46 ARG HA H N N 47 ARG HB2 H N N 48 ARG HB3 H N N 49 ARG HG2 H N N 50 ARG HG3 H N N 51 ARG HD2 H N N 52 ARG HD3 H N N 53 ARG HE H N N 54 ARG HH11 H N N 55 ARG HH12 H N N 56 ARG HH21 H N N 57 ARG HH22 H N N 58 ARG HXT H N N 59 ASN N N N N 60 ASN CA C N S 61 ASN C C N N 62 ASN O O N N 63 ASN CB C N N 64 ASN CG C N N 65 ASN OD1 O N N 66 ASN ND2 N N N 67 ASN OXT O N N 68 ASN H H N N 69 ASN H2 H N N 70 ASN HA H N N 71 ASN HB2 H N N 72 ASN HB3 H N N 73 ASN HD21 H N N 74 ASN HD22 H N N 75 ASN HXT H N N 76 ASP N N N N 77 ASP CA C N S 78 ASP C C N N 79 ASP O O N N 80 ASP CB C N N 81 ASP CG C N N 82 ASP OD1 O N N 83 ASP OD2 O N N 84 ASP OXT O N N 85 ASP H H N N 86 ASP H2 H N N 87 ASP HA H N N 88 ASP HB2 H N N 89 ASP HB3 H N N 90 ASP HD2 H N N 91 ASP HXT H N N 92 DA OP3 O N N 93 DA P P N N 94 DA OP1 O N N 95 DA OP2 O N N 96 DA "O5'" O N N 97 DA "C5'" C N N 98 DA "C4'" C N R 99 DA "O4'" O N N 100 DA "C3'" C N S 101 DA "O3'" O N N 102 DA "C2'" C N N 103 DA "C1'" C N R 104 DA N9 N Y N 105 DA C8 C Y N 106 DA N7 N Y N 107 DA C5 C Y N 108 DA C6 C Y N 109 DA N6 N N N 110 DA N1 N Y N 111 DA C2 C Y N 112 DA N3 N Y N 113 DA C4 C Y N 114 DA HOP3 H N N 115 DA HOP2 H N N 116 DA "H5'" H N N 117 DA "H5''" H N N 118 DA "H4'" H N N 119 DA "H3'" H N N 120 DA "HO3'" H N N 121 DA "H2'" H N N 122 DA "H2''" H N N 123 DA "H1'" H N N 124 DA H8 H N N 125 DA H61 H N N 126 DA H62 H N N 127 DA H2 H N N 128 DC OP3 O N N 129 DC P P N N 130 DC OP1 O N N 131 DC OP2 O N N 132 DC "O5'" O N N 133 DC "C5'" C N N 134 DC "C4'" C N R 135 DC "O4'" O N N 136 DC "C3'" C N S 137 DC "O3'" O N N 138 DC "C2'" C N N 139 DC "C1'" C N R 140 DC N1 N N N 141 DC C2 C N N 142 DC O2 O N N 143 DC N3 N N N 144 DC C4 C N N 145 DC N4 N N N 146 DC C5 C N N 147 DC C6 C N N 148 DC HOP3 H N N 149 DC HOP2 H N N 150 DC "H5'" H N N 151 DC "H5''" H N N 152 DC "H4'" H N N 153 DC "H3'" H N N 154 DC "HO3'" H N N 155 DC "H2'" H N N 156 DC "H2''" H N N 157 DC "H1'" H N N 158 DC H41 H N N 159 DC H42 H N N 160 DC H5 H N N 161 DC H6 H N N 162 DG OP3 O N N 163 DG P P N N 164 DG OP1 O N N 165 DG OP2 O N N 166 DG "O5'" O N N 167 DG "C5'" C N N 168 DG "C4'" C N R 169 DG "O4'" O N N 170 DG "C3'" C N S 171 DG "O3'" O N N 172 DG "C2'" C N N 173 DG "C1'" C N R 174 DG N9 N Y N 175 DG C8 C Y N 176 DG N7 N Y N 177 DG C5 C Y N 178 DG C6 C N N 179 DG O6 O N N 180 DG N1 N N N 181 DG C2 C N N 182 DG N2 N N N 183 DG N3 N N N 184 DG C4 C Y N 185 DG HOP3 H N N 186 DG HOP2 H N N 187 DG "H5'" H N N 188 DG "H5''" H N N 189 DG "H4'" H N N 190 DG "H3'" H N N 191 DG "HO3'" H N N 192 DG "H2'" H N N 193 DG "H2''" H N N 194 DG "H1'" H N N 195 DG H8 H N N 196 DG H1 H N N 197 DG H21 H N N 198 DG H22 H N N 199 DT OP3 O N N 200 DT P P N N 201 DT OP1 O N N 202 DT OP2 O N N 203 DT "O5'" O N N 204 DT "C5'" C N N 205 DT "C4'" C N R 206 DT "O4'" O N N 207 DT "C3'" C N S 208 DT "O3'" O N N 209 DT "C2'" C N N 210 DT "C1'" C N R 211 DT N1 N N N 212 DT C2 C N N 213 DT O2 O N N 214 DT N3 N N N 215 DT C4 C N N 216 DT O4 O N N 217 DT C5 C N N 218 DT C7 C N N 219 DT C6 C N N 220 DT HOP3 H N N 221 DT HOP2 H N N 222 DT "H5'" H N N 223 DT "H5''" H N N 224 DT "H4'" H N N 225 DT "H3'" H N N 226 DT "HO3'" H N N 227 DT "H2'" H N N 228 DT "H2''" H N N 229 DT "H1'" H N N 230 DT H3 H N N 231 DT H71 H N N 232 DT H72 H N N 233 DT H73 H N N 234 DT H6 H N N 235 DZM P P N N 236 DZM N1 N Y N 237 DZM C2 C Y N 238 DZM C3 C Y N 239 DZM C4 C Y N 240 DZM C5 C Y N 241 DZM C6 C Y N 242 DZM N6 N N N 243 DZM N7 N Y N 244 DZM C8 C Y N 245 DZM N9 N Y N 246 DZM "C1'" C N R 247 DZM OP2 O N N 248 DZM "C2'" C N N 249 DZM OP1 O N N 250 DZM "C3'" C N S 251 DZM "O3'" O N N 252 DZM C3M C N N 253 DZM "C4'" C N R 254 DZM "O4'" O N N 255 DZM "C5'" C N N 256 DZM "O5'" O N N 257 DZM OP3 O N N 258 DZM H2 H N N 259 DZM HN6 H N N 260 DZM HN6A H N N 261 DZM H8 H N N 262 DZM "H1'" H N N 263 DZM HOP2 H N N 264 DZM "H2'" H N N 265 DZM "H2'A" H N N 266 DZM "H3'" H N N 267 DZM "HO3'" H N N 268 DZM H3M H N N 269 DZM H3MA H N N 270 DZM H3MB H N N 271 DZM "H4'" H N N 272 DZM "H5'" H N N 273 DZM "H5'A" H N N 274 DZM HOP3 H N N 275 GLN N N N N 276 GLN CA C N S 277 GLN C C N N 278 GLN O O N N 279 GLN CB C N N 280 GLN CG C N N 281 GLN CD C N N 282 GLN OE1 O N N 283 GLN NE2 N N N 284 GLN OXT O N N 285 GLN H H N N 286 GLN H2 H N N 287 GLN HA H N N 288 GLN HB2 H N N 289 GLN HB3 H N N 290 GLN HG2 H N N 291 GLN HG3 H N N 292 GLN HE21 H N N 293 GLN HE22 H N N 294 GLN HXT H N N 295 GLU N N N N 296 GLU CA C N S 297 GLU C C N N 298 GLU O O N N 299 GLU CB C N N 300 GLU CG C N N 301 GLU CD C N N 302 GLU OE1 O N N 303 GLU OE2 O N N 304 GLU OXT O N N 305 GLU H H N N 306 GLU H2 H N N 307 GLU HA H N N 308 GLU HB2 H N N 309 GLU HB3 H N N 310 GLU HG2 H N N 311 GLU HG3 H N N 312 GLU HE2 H N N 313 GLU HXT H N N 314 GLY N N N N 315 GLY CA C N N 316 GLY C C N N 317 GLY O O N N 318 GLY OXT O N N 319 GLY H H N N 320 GLY H2 H N N 321 GLY HA2 H N N 322 GLY HA3 H N N 323 GLY HXT H N N 324 HIS N N N N 325 HIS CA C N S 326 HIS C C N N 327 HIS O O N N 328 HIS CB C N N 329 HIS CG C Y N 330 HIS ND1 N Y N 331 HIS CD2 C Y N 332 HIS CE1 C Y N 333 HIS NE2 N Y N 334 HIS OXT O N N 335 HIS H H N N 336 HIS H2 H N N 337 HIS HA H N N 338 HIS HB2 H N N 339 HIS HB3 H N N 340 HIS HD1 H N N 341 HIS HD2 H N N 342 HIS HE1 H N N 343 HIS HE2 H N N 344 HIS HXT H N N 345 HOH O O N N 346 HOH H1 H N N 347 HOH H2 H N N 348 ILE N N N N 349 ILE CA C N S 350 ILE C C N N 351 ILE O O N N 352 ILE CB C N S 353 ILE CG1 C N N 354 ILE CG2 C N N 355 ILE CD1 C N N 356 ILE OXT O N N 357 ILE H H N N 358 ILE H2 H N N 359 ILE HA H N N 360 ILE HB H N N 361 ILE HG12 H N N 362 ILE HG13 H N N 363 ILE HG21 H N N 364 ILE HG22 H N N 365 ILE HG23 H N N 366 ILE HD11 H N N 367 ILE HD12 H N N 368 ILE HD13 H N N 369 ILE HXT H N N 370 LEU N N N N 371 LEU CA C N S 372 LEU C C N N 373 LEU O O N N 374 LEU CB C N N 375 LEU CG C N N 376 LEU CD1 C N N 377 LEU CD2 C N N 378 LEU OXT O N N 379 LEU H H N N 380 LEU H2 H N N 381 LEU HA H N N 382 LEU HB2 H N N 383 LEU HB3 H N N 384 LEU HG H N N 385 LEU HD11 H N N 386 LEU HD12 H N N 387 LEU HD13 H N N 388 LEU HD21 H N N 389 LEU HD22 H N N 390 LEU HD23 H N N 391 LEU HXT H N N 392 LYS N N N N 393 LYS CA C N S 394 LYS C C N N 395 LYS O O N N 396 LYS CB C N N 397 LYS CG C N N 398 LYS CD C N N 399 LYS CE C N N 400 LYS NZ N N N 401 LYS OXT O N N 402 LYS H H N N 403 LYS H2 H N N 404 LYS HA H N N 405 LYS HB2 H N N 406 LYS HB3 H N N 407 LYS HG2 H N N 408 LYS HG3 H N N 409 LYS HD2 H N N 410 LYS HD3 H N N 411 LYS HE2 H N N 412 LYS HE3 H N N 413 LYS HZ1 H N N 414 LYS HZ2 H N N 415 LYS HZ3 H N N 416 LYS HXT H N N 417 MET N N N N 418 MET CA C N S 419 MET C C N N 420 MET O O N N 421 MET CB C N N 422 MET CG C N N 423 MET SD S N N 424 MET CE C N N 425 MET OXT O N N 426 MET H H N N 427 MET H2 H N N 428 MET HA H N N 429 MET HB2 H N N 430 MET HB3 H N N 431 MET HG2 H N N 432 MET HG3 H N N 433 MET HE1 H N N 434 MET HE2 H N N 435 MET HE3 H N N 436 MET HXT H N N 437 ORP C1 C N S 438 ORP O1 O N N 439 ORP C2 C N N 440 ORP C3 C N S 441 ORP O3 O N N 442 ORP C4 C N R 443 ORP O4 O N N 444 ORP C5 C N N 445 ORP O5 O N N 446 ORP P P N N 447 ORP O1P O N N 448 ORP O2P O N N 449 ORP O3P O N N 450 ORP H1 H N N 451 ORP HO1 H N N 452 ORP H21 H N N 453 ORP H22 H N N 454 ORP H3 H N N 455 ORP HO3 H N N 456 ORP H4 H N N 457 ORP H51 H N N 458 ORP H52 H N N 459 ORP HOP2 H N N 460 ORP HOP3 H N N 461 PHE N N N N 462 PHE CA C N S 463 PHE C C N N 464 PHE O O N N 465 PHE CB C N N 466 PHE CG C Y N 467 PHE CD1 C Y N 468 PHE CD2 C Y N 469 PHE CE1 C Y N 470 PHE CE2 C Y N 471 PHE CZ C Y N 472 PHE OXT O N N 473 PHE H H N N 474 PHE H2 H N N 475 PHE HA H N N 476 PHE HB2 H N N 477 PHE HB3 H N N 478 PHE HD1 H N N 479 PHE HD2 H N N 480 PHE HE1 H N N 481 PHE HE2 H N N 482 PHE HZ H N N 483 PHE HXT H N N 484 PRO N N N N 485 PRO CA C N S 486 PRO C C N N 487 PRO O O N N 488 PRO CB C N N 489 PRO CG C N N 490 PRO CD C N N 491 PRO OXT O N N 492 PRO H H N N 493 PRO HA H N N 494 PRO HB2 H N N 495 PRO HB3 H N N 496 PRO HG2 H N N 497 PRO HG3 H N N 498 PRO HD2 H N N 499 PRO HD3 H N N 500 PRO HXT H N N 501 SER N N N N 502 SER CA C N S 503 SER C C N N 504 SER O O N N 505 SER CB C N N 506 SER OG O N N 507 SER OXT O N N 508 SER H H N N 509 SER H2 H N N 510 SER HA H N N 511 SER HB2 H N N 512 SER HB3 H N N 513 SER HG H N N 514 SER HXT H N N 515 THR N N N N 516 THR CA C N S 517 THR C C N N 518 THR O O N N 519 THR CB C N R 520 THR OG1 O N N 521 THR CG2 C N N 522 THR OXT O N N 523 THR H H N N 524 THR H2 H N N 525 THR HA H N N 526 THR HB H N N 527 THR HG1 H N N 528 THR HG21 H N N 529 THR HG22 H N N 530 THR HG23 H N N 531 THR HXT H N N 532 TRP N N N N 533 TRP CA C N S 534 TRP C C N N 535 TRP O O N N 536 TRP CB C N N 537 TRP CG C Y N 538 TRP CD1 C Y N 539 TRP CD2 C Y N 540 TRP NE1 N Y N 541 TRP CE2 C Y N 542 TRP CE3 C Y N 543 TRP CZ2 C Y N 544 TRP CZ3 C Y N 545 TRP CH2 C Y N 546 TRP OXT O N N 547 TRP H H N N 548 TRP H2 H N N 549 TRP HA H N N 550 TRP HB2 H N N 551 TRP HB3 H N N 552 TRP HD1 H N N 553 TRP HE1 H N N 554 TRP HE3 H N N 555 TRP HZ2 H N N 556 TRP HZ3 H N N 557 TRP HH2 H N N 558 TRP HXT H N N 559 TYR N N N N 560 TYR CA C N S 561 TYR C C N N 562 TYR O O N N 563 TYR CB C N N 564 TYR CG C Y N 565 TYR CD1 C Y N 566 TYR CD2 C Y N 567 TYR CE1 C Y N 568 TYR CE2 C Y N 569 TYR CZ C Y N 570 TYR OH O N N 571 TYR OXT O N N 572 TYR H H N N 573 TYR H2 H N N 574 TYR HA H N N 575 TYR HB2 H N N 576 TYR HB3 H N N 577 TYR HD1 H N N 578 TYR HD2 H N N 579 TYR HE1 H N N 580 TYR HE2 H N N 581 TYR HH H N N 582 TYR HXT H N N 583 VAL N N N N 584 VAL CA C N S 585 VAL C C N N 586 VAL O O N N 587 VAL CB C N N 588 VAL CG1 C N N 589 VAL CG2 C N N 590 VAL OXT O N N 591 VAL H H N N 592 VAL H2 H N N 593 VAL HA H N N 594 VAL HB H N N 595 VAL HG11 H N N 596 VAL HG12 H N N 597 VAL HG13 H N N 598 VAL HG21 H N N 599 VAL HG22 H N N 600 VAL HG23 H N N 601 VAL HXT H N N 602 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 54K C3M C3 sing N N 1 54K C2 C3 doub Y N 2 54K C2 N1 sing Y N 3 54K C3 C4 sing Y N 4 54K N1 C6 doub Y N 5 54K C4 N9 sing Y N 6 54K C4 C5 doub Y N 7 54K C6 C5 sing Y N 8 54K C6 N6 sing N N 9 54K N9 C8 doub Y N 10 54K C5 N7 sing Y N 11 54K C8 N7 sing Y N 12 54K C2 H1 sing N N 13 54K C3M H2 sing N N 14 54K C3M H3 sing N N 15 54K C3M H4 sing N N 16 54K N6 H5 sing N N 17 54K N6 H6 sing N N 18 54K N7 H7 sing N N 19 54K C8 H8 sing N N 20 ALA N CA sing N N 21 ALA N H sing N N 22 ALA N H2 sing N N 23 ALA CA C sing N N 24 ALA CA CB sing N N 25 ALA CA HA sing N N 26 ALA C O doub N N 27 ALA C OXT sing N N 28 ALA CB HB1 sing N N 29 ALA CB HB2 sing N N 30 ALA CB HB3 sing N N 31 ALA OXT HXT sing N N 32 ARG N CA sing N N 33 ARG N H sing N N 34 ARG N H2 sing N N 35 ARG CA C sing N N 36 ARG CA CB sing N N 37 ARG CA HA sing N N 38 ARG C O doub N N 39 ARG C OXT sing N N 40 ARG CB CG sing N N 41 ARG CB HB2 sing N N 42 ARG CB HB3 sing N N 43 ARG CG CD sing N N 44 ARG CG HG2 sing N N 45 ARG CG HG3 sing N N 46 ARG CD NE sing N N 47 ARG CD HD2 sing N N 48 ARG CD HD3 sing N N 49 ARG NE CZ sing N N 50 ARG NE HE sing N N 51 ARG CZ NH1 sing N N 52 ARG CZ NH2 doub N N 53 ARG NH1 HH11 sing N N 54 ARG NH1 HH12 sing N N 55 ARG NH2 HH21 sing N N 56 ARG NH2 HH22 sing N N 57 ARG OXT HXT sing N N 58 ASN N CA sing N N 59 ASN N H sing N N 60 ASN N H2 sing N N 61 ASN CA C sing N N 62 ASN CA CB sing N N 63 ASN CA HA sing N N 64 ASN C O doub N N 65 ASN C OXT sing N N 66 ASN CB CG sing N N 67 ASN CB HB2 sing N N 68 ASN CB HB3 sing N N 69 ASN CG OD1 doub N N 70 ASN CG ND2 sing N N 71 ASN ND2 HD21 sing N N 72 ASN ND2 HD22 sing N N 73 ASN OXT HXT sing N N 74 ASP N CA sing N N 75 ASP N H sing N N 76 ASP N H2 sing N N 77 ASP CA C sing N N 78 ASP CA CB sing N N 79 ASP CA HA sing N N 80 ASP C O doub N N 81 ASP C OXT sing N N 82 ASP CB CG sing N N 83 ASP CB HB2 sing N N 84 ASP CB HB3 sing N N 85 ASP CG OD1 doub N N 86 ASP CG OD2 sing N N 87 ASP OD2 HD2 sing N N 88 ASP OXT HXT sing N N 89 DA OP3 P sing N N 90 DA OP3 HOP3 sing N N 91 DA P OP1 doub N N 92 DA P OP2 sing N N 93 DA P "O5'" sing N N 94 DA OP2 HOP2 sing N N 95 DA "O5'" "C5'" sing N N 96 DA "C5'" "C4'" sing N N 97 DA "C5'" "H5'" sing N N 98 DA "C5'" "H5''" sing N N 99 DA "C4'" "O4'" sing N N 100 DA "C4'" "C3'" sing N N 101 DA "C4'" "H4'" sing N N 102 DA "O4'" "C1'" sing N N 103 DA "C3'" "O3'" sing N N 104 DA "C3'" "C2'" sing N N 105 DA "C3'" "H3'" sing N N 106 DA "O3'" "HO3'" sing N N 107 DA "C2'" "C1'" sing N N 108 DA "C2'" "H2'" sing N N 109 DA "C2'" "H2''" sing N N 110 DA "C1'" N9 sing N N 111 DA "C1'" "H1'" sing N N 112 DA N9 C8 sing Y N 113 DA N9 C4 sing Y N 114 DA C8 N7 doub Y N 115 DA C8 H8 sing N N 116 DA N7 C5 sing Y N 117 DA C5 C6 sing Y N 118 DA C5 C4 doub Y N 119 DA C6 N6 sing N N 120 DA C6 N1 doub Y N 121 DA N6 H61 sing N N 122 DA N6 H62 sing N N 123 DA N1 C2 sing Y N 124 DA C2 N3 doub Y N 125 DA C2 H2 sing N N 126 DA N3 C4 sing Y N 127 DC OP3 P sing N N 128 DC OP3 HOP3 sing N N 129 DC P OP1 doub N N 130 DC P OP2 sing N N 131 DC P "O5'" sing N N 132 DC OP2 HOP2 sing N N 133 DC "O5'" "C5'" sing N N 134 DC "C5'" "C4'" sing N N 135 DC "C5'" "H5'" sing N N 136 DC "C5'" "H5''" sing N N 137 DC "C4'" "O4'" sing N N 138 DC "C4'" "C3'" sing N N 139 DC "C4'" "H4'" sing N N 140 DC "O4'" "C1'" sing N N 141 DC "C3'" "O3'" sing N N 142 DC "C3'" "C2'" sing N N 143 DC "C3'" "H3'" sing N N 144 DC "O3'" "HO3'" sing N N 145 DC "C2'" "C1'" sing N N 146 DC "C2'" "H2'" sing N N 147 DC "C2'" "H2''" sing N N 148 DC "C1'" N1 sing N N 149 DC "C1'" "H1'" sing N N 150 DC N1 C2 sing N N 151 DC N1 C6 sing N N 152 DC C2 O2 doub N N 153 DC C2 N3 sing N N 154 DC N3 C4 doub N N 155 DC C4 N4 sing N N 156 DC C4 C5 sing N N 157 DC N4 H41 sing N N 158 DC N4 H42 sing N N 159 DC C5 C6 doub N N 160 DC C5 H5 sing N N 161 DC C6 H6 sing N N 162 DG OP3 P sing N N 163 DG OP3 HOP3 sing N N 164 DG P OP1 doub N N 165 DG P OP2 sing N N 166 DG P "O5'" sing N N 167 DG OP2 HOP2 sing N N 168 DG "O5'" "C5'" sing N N 169 DG "C5'" "C4'" sing N N 170 DG "C5'" "H5'" sing N N 171 DG "C5'" "H5''" sing N N 172 DG "C4'" "O4'" sing N N 173 DG "C4'" "C3'" sing N N 174 DG "C4'" "H4'" sing N N 175 DG "O4'" "C1'" sing N N 176 DG "C3'" "O3'" sing N N 177 DG "C3'" "C2'" sing N N 178 DG "C3'" "H3'" sing N N 179 DG "O3'" "HO3'" sing N N 180 DG "C2'" "C1'" sing N N 181 DG "C2'" "H2'" sing N N 182 DG "C2'" "H2''" sing N N 183 DG "C1'" N9 sing N N 184 DG "C1'" "H1'" sing N N 185 DG N9 C8 sing Y N 186 DG N9 C4 sing Y N 187 DG C8 N7 doub Y N 188 DG C8 H8 sing N N 189 DG N7 C5 sing Y N 190 DG C5 C6 sing N N 191 DG C5 C4 doub Y N 192 DG C6 O6 doub N N 193 DG C6 N1 sing N N 194 DG N1 C2 sing N N 195 DG N1 H1 sing N N 196 DG C2 N2 sing N N 197 DG C2 N3 doub N N 198 DG N2 H21 sing N N 199 DG N2 H22 sing N N 200 DG N3 C4 sing N N 201 DT OP3 P sing N N 202 DT OP3 HOP3 sing N N 203 DT P OP1 doub N N 204 DT P OP2 sing N N 205 DT P "O5'" sing N N 206 DT OP2 HOP2 sing N N 207 DT "O5'" "C5'" sing N N 208 DT "C5'" "C4'" sing N N 209 DT "C5'" "H5'" sing N N 210 DT "C5'" "H5''" sing N N 211 DT "C4'" "O4'" sing N N 212 DT "C4'" "C3'" sing N N 213 DT "C4'" "H4'" sing N N 214 DT "O4'" "C1'" sing N N 215 DT "C3'" "O3'" sing N N 216 DT "C3'" "C2'" sing N N 217 DT "C3'" "H3'" sing N N 218 DT "O3'" "HO3'" sing N N 219 DT "C2'" "C1'" sing N N 220 DT "C2'" "H2'" sing N N 221 DT "C2'" "H2''" sing N N 222 DT "C1'" N1 sing N N 223 DT "C1'" "H1'" sing N N 224 DT N1 C2 sing N N 225 DT N1 C6 sing N N 226 DT C2 O2 doub N N 227 DT C2 N3 sing N N 228 DT N3 C4 sing N N 229 DT N3 H3 sing N N 230 DT C4 O4 doub N N 231 DT C4 C5 sing N N 232 DT C5 C7 sing N N 233 DT C5 C6 doub N N 234 DT C7 H71 sing N N 235 DT C7 H72 sing N N 236 DT C7 H73 sing N N 237 DT C6 H6 sing N N 238 DZM P OP2 sing N N 239 DZM P OP1 doub N N 240 DZM P "O5'" sing N N 241 DZM N1 C2 sing Y N 242 DZM N1 C6 doub Y N 243 DZM C2 C3 doub Y N 244 DZM C3 C4 sing Y N 245 DZM C3 C3M sing N N 246 DZM C4 C5 doub Y N 247 DZM C4 N9 sing Y N 248 DZM C5 C6 sing Y N 249 DZM C5 N7 sing Y N 250 DZM C6 N6 sing N N 251 DZM N7 C8 doub Y N 252 DZM C8 N9 sing Y N 253 DZM N9 "C1'" sing N N 254 DZM "C1'" "C2'" sing N N 255 DZM "C1'" "O4'" sing N N 256 DZM "C2'" "C3'" sing N N 257 DZM "C3'" "O3'" sing N N 258 DZM "C3'" "C4'" sing N N 259 DZM "C4'" "O4'" sing N N 260 DZM "C4'" "C5'" sing N N 261 DZM "C5'" "O5'" sing N N 262 DZM P OP3 sing N N 263 DZM C2 H2 sing N N 264 DZM N6 HN6 sing N N 265 DZM N6 HN6A sing N N 266 DZM C8 H8 sing N N 267 DZM "C1'" "H1'" sing N N 268 DZM OP2 HOP2 sing N N 269 DZM "C2'" "H2'" sing N N 270 DZM "C2'" "H2'A" sing N N 271 DZM "C3'" "H3'" sing N N 272 DZM "O3'" "HO3'" sing N N 273 DZM C3M H3M sing N N 274 DZM C3M H3MA sing N N 275 DZM C3M H3MB sing N N 276 DZM "C4'" "H4'" sing N N 277 DZM "C5'" "H5'" sing N N 278 DZM "C5'" "H5'A" sing N N 279 DZM OP3 HOP3 sing N N 280 GLN N CA sing N N 281 GLN N H sing N N 282 GLN N H2 sing N N 283 GLN CA C sing N N 284 GLN CA CB sing N N 285 GLN CA HA sing N N 286 GLN C O doub N N 287 GLN C OXT sing N N 288 GLN CB CG sing N N 289 GLN CB HB2 sing N N 290 GLN CB HB3 sing N N 291 GLN CG CD sing N N 292 GLN CG HG2 sing N N 293 GLN CG HG3 sing N N 294 GLN CD OE1 doub N N 295 GLN CD NE2 sing N N 296 GLN NE2 HE21 sing N N 297 GLN NE2 HE22 sing N N 298 GLN OXT HXT sing N N 299 GLU N CA sing N N 300 GLU N H sing N N 301 GLU N H2 sing N N 302 GLU CA C sing N N 303 GLU CA CB sing N N 304 GLU CA HA sing N N 305 GLU C O doub N N 306 GLU C OXT sing N N 307 GLU CB CG sing N N 308 GLU CB HB2 sing N N 309 GLU CB HB3 sing N N 310 GLU CG CD sing N N 311 GLU CG HG2 sing N N 312 GLU CG HG3 sing N N 313 GLU CD OE1 doub N N 314 GLU CD OE2 sing N N 315 GLU OE2 HE2 sing N N 316 GLU OXT HXT sing N N 317 GLY N CA sing N N 318 GLY N H sing N N 319 GLY N H2 sing N N 320 GLY CA C sing N N 321 GLY CA HA2 sing N N 322 GLY CA HA3 sing N N 323 GLY C O doub N N 324 GLY C OXT sing N N 325 GLY OXT HXT sing N N 326 HIS N CA sing N N 327 HIS N H sing N N 328 HIS N H2 sing N N 329 HIS CA C sing N N 330 HIS CA CB sing N N 331 HIS CA HA sing N N 332 HIS C O doub N N 333 HIS C OXT sing N N 334 HIS CB CG sing N N 335 HIS CB HB2 sing N N 336 HIS CB HB3 sing N N 337 HIS CG ND1 sing Y N 338 HIS CG CD2 doub Y N 339 HIS ND1 CE1 doub Y N 340 HIS ND1 HD1 sing N N 341 HIS CD2 NE2 sing Y N 342 HIS CD2 HD2 sing N N 343 HIS CE1 NE2 sing Y N 344 HIS CE1 HE1 sing N N 345 HIS NE2 HE2 sing N N 346 HIS OXT HXT sing N N 347 HOH O H1 sing N N 348 HOH O H2 sing N N 349 ILE N CA sing N N 350 ILE N H sing N N 351 ILE N H2 sing N N 352 ILE CA C sing N N 353 ILE CA CB sing N N 354 ILE CA HA sing N N 355 ILE C O doub N N 356 ILE C OXT sing N N 357 ILE CB CG1 sing N N 358 ILE CB CG2 sing N N 359 ILE CB HB sing N N 360 ILE CG1 CD1 sing N N 361 ILE CG1 HG12 sing N N 362 ILE CG1 HG13 sing N N 363 ILE CG2 HG21 sing N N 364 ILE CG2 HG22 sing N N 365 ILE CG2 HG23 sing N N 366 ILE CD1 HD11 sing N N 367 ILE CD1 HD12 sing N N 368 ILE CD1 HD13 sing N N 369 ILE OXT HXT sing N N 370 LEU N CA sing N N 371 LEU N H sing N N 372 LEU N H2 sing N N 373 LEU CA C sing N N 374 LEU CA CB sing N N 375 LEU CA HA sing N N 376 LEU C O doub N N 377 LEU C OXT sing N N 378 LEU CB CG sing N N 379 LEU CB HB2 sing N N 380 LEU CB HB3 sing N N 381 LEU CG CD1 sing N N 382 LEU CG CD2 sing N N 383 LEU CG HG sing N N 384 LEU CD1 HD11 sing N N 385 LEU CD1 HD12 sing N N 386 LEU CD1 HD13 sing N N 387 LEU CD2 HD21 sing N N 388 LEU CD2 HD22 sing N N 389 LEU CD2 HD23 sing N N 390 LEU OXT HXT sing N N 391 LYS N CA sing N N 392 LYS N H sing N N 393 LYS N H2 sing N N 394 LYS CA C sing N N 395 LYS CA CB sing N N 396 LYS CA HA sing N N 397 LYS C O doub N N 398 LYS C OXT sing N N 399 LYS CB CG sing N N 400 LYS CB HB2 sing N N 401 LYS CB HB3 sing N N 402 LYS CG CD sing N N 403 LYS CG HG2 sing N N 404 LYS CG HG3 sing N N 405 LYS CD CE sing N N 406 LYS CD HD2 sing N N 407 LYS CD HD3 sing N N 408 LYS CE NZ sing N N 409 LYS CE HE2 sing N N 410 LYS CE HE3 sing N N 411 LYS NZ HZ1 sing N N 412 LYS NZ HZ2 sing N N 413 LYS NZ HZ3 sing N N 414 LYS OXT HXT sing N N 415 MET N CA sing N N 416 MET N H sing N N 417 MET N H2 sing N N 418 MET CA C sing N N 419 MET CA CB sing N N 420 MET CA HA sing N N 421 MET C O doub N N 422 MET C OXT sing N N 423 MET CB CG sing N N 424 MET CB HB2 sing N N 425 MET CB HB3 sing N N 426 MET CG SD sing N N 427 MET CG HG2 sing N N 428 MET CG HG3 sing N N 429 MET SD CE sing N N 430 MET CE HE1 sing N N 431 MET CE HE2 sing N N 432 MET CE HE3 sing N N 433 MET OXT HXT sing N N 434 ORP C1 O1 sing N N 435 ORP C1 C2 sing N N 436 ORP C1 O4 sing N N 437 ORP C1 H1 sing N N 438 ORP O1 HO1 sing N N 439 ORP C2 C3 sing N N 440 ORP C2 H21 sing N N 441 ORP C2 H22 sing N N 442 ORP C3 O3 sing N N 443 ORP C3 C4 sing N N 444 ORP C3 H3 sing N N 445 ORP O3 HO3 sing N N 446 ORP C4 O4 sing N N 447 ORP C4 C5 sing N N 448 ORP C4 H4 sing N N 449 ORP C5 O5 sing N N 450 ORP C5 H51 sing N N 451 ORP C5 H52 sing N N 452 ORP O5 P sing N N 453 ORP P O1P doub N N 454 ORP P O2P sing N N 455 ORP P O3P sing N N 456 ORP O2P HOP2 sing N N 457 ORP O3P HOP3 sing N N 458 PHE N CA sing N N 459 PHE N H sing N N 460 PHE N H2 sing N N 461 PHE CA C sing N N 462 PHE CA CB sing N N 463 PHE CA HA sing N N 464 PHE C O doub N N 465 PHE C OXT sing N N 466 PHE CB CG sing N N 467 PHE CB HB2 sing N N 468 PHE CB HB3 sing N N 469 PHE CG CD1 doub Y N 470 PHE CG CD2 sing Y N 471 PHE CD1 CE1 sing Y N 472 PHE CD1 HD1 sing N N 473 PHE CD2 CE2 doub Y N 474 PHE CD2 HD2 sing N N 475 PHE CE1 CZ doub Y N 476 PHE CE1 HE1 sing N N 477 PHE CE2 CZ sing Y N 478 PHE CE2 HE2 sing N N 479 PHE CZ HZ sing N N 480 PHE OXT HXT sing N N 481 PRO N CA sing N N 482 PRO N CD sing N N 483 PRO N H sing N N 484 PRO CA C sing N N 485 PRO CA CB sing N N 486 PRO CA HA sing N N 487 PRO C O doub N N 488 PRO C OXT sing N N 489 PRO CB CG sing N N 490 PRO CB HB2 sing N N 491 PRO CB HB3 sing N N 492 PRO CG CD sing N N 493 PRO CG HG2 sing N N 494 PRO CG HG3 sing N N 495 PRO CD HD2 sing N N 496 PRO CD HD3 sing N N 497 PRO OXT HXT sing N N 498 SER N CA sing N N 499 SER N H sing N N 500 SER N H2 sing N N 501 SER CA C sing N N 502 SER CA CB sing N N 503 SER CA HA sing N N 504 SER C O doub N N 505 SER C OXT sing N N 506 SER CB OG sing N N 507 SER CB HB2 sing N N 508 SER CB HB3 sing N N 509 SER OG HG sing N N 510 SER OXT HXT sing N N 511 THR N CA sing N N 512 THR N H sing N N 513 THR N H2 sing N N 514 THR CA C sing N N 515 THR CA CB sing N N 516 THR CA HA sing N N 517 THR C O doub N N 518 THR C OXT sing N N 519 THR CB OG1 sing N N 520 THR CB CG2 sing N N 521 THR CB HB sing N N 522 THR OG1 HG1 sing N N 523 THR CG2 HG21 sing N N 524 THR CG2 HG22 sing N N 525 THR CG2 HG23 sing N N 526 THR OXT HXT sing N N 527 TRP N CA sing N N 528 TRP N H sing N N 529 TRP N H2 sing N N 530 TRP CA C sing N N 531 TRP CA CB sing N N 532 TRP CA HA sing N N 533 TRP C O doub N N 534 TRP C OXT sing N N 535 TRP CB CG sing N N 536 TRP CB HB2 sing N N 537 TRP CB HB3 sing N N 538 TRP CG CD1 doub Y N 539 TRP CG CD2 sing Y N 540 TRP CD1 NE1 sing Y N 541 TRP CD1 HD1 sing N N 542 TRP CD2 CE2 doub Y N 543 TRP CD2 CE3 sing Y N 544 TRP NE1 CE2 sing Y N 545 TRP NE1 HE1 sing N N 546 TRP CE2 CZ2 sing Y N 547 TRP CE3 CZ3 doub Y N 548 TRP CE3 HE3 sing N N 549 TRP CZ2 CH2 doub Y N 550 TRP CZ2 HZ2 sing N N 551 TRP CZ3 CH2 sing Y N 552 TRP CZ3 HZ3 sing N N 553 TRP CH2 HH2 sing N N 554 TRP OXT HXT sing N N 555 TYR N CA sing N N 556 TYR N H sing N N 557 TYR N H2 sing N N 558 TYR CA C sing N N 559 TYR CA CB sing N N 560 TYR CA HA sing N N 561 TYR C O doub N N 562 TYR C OXT sing N N 563 TYR CB CG sing N N 564 TYR CB HB2 sing N N 565 TYR CB HB3 sing N N 566 TYR CG CD1 doub Y N 567 TYR CG CD2 sing Y N 568 TYR CD1 CE1 sing Y N 569 TYR CD1 HD1 sing N N 570 TYR CD2 CE2 doub Y N 571 TYR CD2 HD2 sing N N 572 TYR CE1 CZ doub Y N 573 TYR CE1 HE1 sing N N 574 TYR CE2 CZ sing Y N 575 TYR CE2 HE2 sing N N 576 TYR CZ OH sing N N 577 TYR OH HH sing N N 578 TYR OXT HXT sing N N 579 VAL N CA sing N N 580 VAL N H sing N N 581 VAL N H2 sing N N 582 VAL CA C sing N N 583 VAL CA CB sing N N 584 VAL CA HA sing N N 585 VAL C O doub N N 586 VAL C OXT sing N N 587 VAL CB CG1 sing N N 588 VAL CB CG2 sing N N 589 VAL CB HB sing N N 590 VAL CG1 HG11 sing N N 591 VAL CG1 HG12 sing N N 592 VAL CG1 HG13 sing N N 593 VAL CG2 HG21 sing N N 594 VAL CG2 HG22 sing N N 595 VAL CG2 HG23 sing N N 596 VAL OXT HXT sing N N 597 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5CL4 'double helix' 5CL4 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 12 1_555 -0.227 -0.122 0.195 -2.404 -12.785 -0.349 1 B_DC1:DG24_C B 1 ? C 24 ? 19 1 1 B DC 2 1_555 C DG 11 1_555 0.121 -0.365 0.312 -9.864 -7.547 -1.731 2 B_DC2:DG23_C B 2 ? C 23 ? 19 1 1 B DC 3 1_555 C DG 10 1_555 0.113 -0.248 0.000 -2.092 -4.980 0.913 3 B_DC3:DG22_C B 3 ? C 22 ? 19 1 1 B DG 4 1_555 C DC 9 1_555 -0.356 -0.188 -0.057 4.228 -4.236 1.177 4 B_DG4:DC21_C B 4 ? C 21 ? 19 1 1 B DA 5 1_555 C DT 8 1_555 -0.034 -0.190 0.080 -2.529 -10.025 4.265 5 B_DA5:DT20_C B 5 ? C 20 ? 20 1 1 B DZM 6 1_555 C DT 7 1_555 -4.217 -0.871 -0.335 4.760 -35.770 6.634 6 B_DZM6:DT19_C B 6 ? C 19 ? ? ? 1 B DA 7 1_555 C DT 6 1_555 0.462 -0.048 0.078 3.557 -23.583 -2.945 7 B_DA7:DT18_C B 7 ? C 18 ? 20 1 1 B DG 8 1_555 C DC 5 1_555 -0.443 -0.213 0.296 -9.568 -19.431 5.676 8 B_DG8:DC17_C B 8 ? C 17 ? 19 1 1 B DT 9 1_555 C DA 4 1_555 -0.189 -0.187 0.132 -6.481 -7.741 -2.040 9 B_DT9:DA16_C B 9 ? C 16 ? 20 1 1 B DC 10 1_555 C DG 3 1_555 0.650 -0.167 -0.021 -2.019 -7.132 -0.364 10 B_DC10:DG15_C B 10 ? C 15 ? 19 1 1 B DC 11 1_555 C DG 2 1_555 0.050 -0.336 0.035 -5.546 -0.335 -0.185 11 B_DC11:DG14_C B 11 ? C 14 ? 19 1 1 B DG 12 1_555 C DC 1 1_555 0.473 -0.250 -0.027 13.009 1.469 -1.322 12 B_DG12:DC13_C B 12 ? C 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 12 1_555 B DC 2 1_555 C DG 11 1_555 0.108 -0.905 3.401 1.614 5.820 37.804 -2.127 0.042 3.233 8.912 -2.471 38.266 1 BB_DC1DC2:DG23DG24_CC B 1 ? C 24 ? B 2 ? C 23 ? 1 B DC 2 1_555 C DG 11 1_555 B DC 3 1_555 C DG 10 1_555 -0.118 -0.505 3.079 5.014 3.939 30.086 -1.670 1.136 2.933 7.482 -9.525 30.739 2 BB_DC2DC3:DG22DG23_CC B 2 ? C 23 ? B 3 ? C 22 ? 1 B DC 3 1_555 C DG 10 1_555 B DG 4 1_555 C DC 9 1_555 -0.038 0.021 3.099 0.027 8.093 32.982 -1.195 0.069 3.019 13.994 -0.047 33.934 3 BB_DC3DG4:DC21DG22_CC B 3 ? C 22 ? B 4 ? C 21 ? 1 B DG 4 1_555 C DC 9 1_555 B DA 5 1_555 C DT 8 1_555 -0.203 -0.233 3.393 -2.615 1.598 35.816 -0.615 -0.059 3.386 2.592 4.243 35.942 4 BB_DG4DA5:DT20DC21_CC B 4 ? C 21 ? B 5 ? C 20 ? 1 B DA 5 1_555 C DT 8 1_555 B DZM 6 1_555 C DT 7 1_555 0.019 0.156 3.034 2.836 5.777 19.271 -2.000 1.145 2.927 16.667 -8.181 20.307 5 BB_DA5DZM6:DT19DT20_CC B 5 ? C 20 ? B 6 ? C 19 ? 1 B DZM 6 1_555 C DT 7 1_555 B DA 7 1_555 C DT 6 1_555 0.148 -0.060 3.529 -5.864 9.123 42.058 -1.035 -0.814 3.396 12.464 8.012 43.373 6 BB_DZM6DA7:DT18DT19_CC B 6 ? C 19 ? B 7 ? C 18 ? 1 B DA 7 1_555 C DT 6 1_555 B DG 8 1_555 C DC 5 1_555 0.914 -1.396 3.483 0.132 6.972 35.297 -3.280 -1.461 3.162 11.362 -0.215 35.958 7 BB_DA7DG8:DC17DT18_CC B 7 ? C 18 ? B 8 ? C 17 ? 1 B DG 8 1_555 C DC 5 1_555 B DT 9 1_555 C DA 4 1_555 -0.875 -1.067 3.169 2.234 4.770 32.229 -2.674 1.920 2.919 8.521 -3.991 32.646 8 BB_DG8DT9:DA16DC17_CC B 8 ? C 17 ? B 9 ? C 16 ? 1 B DT 9 1_555 C DA 4 1_555 B DC 10 1_555 C DG 3 1_555 0.169 -0.414 3.172 2.411 2.800 37.730 -0.984 0.038 3.139 4.317 -3.718 37.904 9 BB_DT9DC10:DG15DA16_CC B 9 ? C 16 ? B 10 ? C 15 ? 1 B DC 10 1_555 C DG 3 1_555 B DC 11 1_555 C DG 2 1_555 0.392 -0.344 3.381 1.246 3.491 31.019 -1.321 -0.485 3.336 6.499 -2.320 31.234 10 BB_DC10DC11:DG14DG15_CC B 10 ? C 15 ? B 11 ? C 14 ? 1 B DC 11 1_555 C DG 2 1_555 B DG 12 1_555 C DC 1 1_555 -0.471 0.004 2.971 -1.168 5.634 30.700 -0.969 0.672 2.940 10.526 2.181 31.222 11 BB_DC11DG12:DC13DG14_CC B 11 ? C 14 ? B 12 ? C 13 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number MCB-1122098 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 '7-methyl-3H-imidazo[4,5-c]pyridin-4-amine' 54K 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3BVS _pdbx_initial_refinement_model.details 'PDB entry 3BVS' #