HEADER HYDROLASE/DNA 16-JUL-15 5CLC TITLE ALKYLPURINE DNA GLYCOSYLASE ALKD BOUND TO DNA CONTAINING A 3- TITLE 2 METHYLADENINE ANALOG (9-MER B) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKD; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.2.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*AP*AP*GP*CP*CP*(DZM)P*CP*CP*C)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*TP*GP*GP*GP*TP*GP*GP*CP*T)-3'); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 ATCC: 14579; SOURCE 5 GENE: IKE_03968; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HMS174; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBG103; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS DNA GLYCOSYLASE, HEAT-LIKE REPEAT, PROTEIN-DNA COMPLEX, HYDROLASE-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.A.MULLINS,B.F.EICHMAN REVDAT 6 27-SEP-23 5CLC 1 REMARK REVDAT 5 27-NOV-19 5CLC 1 REMARK REVDAT 4 06-SEP-17 5CLC 1 JRNL REMARK REVDAT 3 25-NOV-15 5CLC 1 JRNL REVDAT 2 18-NOV-15 5CLC 1 JRNL REVDAT 1 28-OCT-15 5CLC 0 JRNL AUTH E.A.MULLINS,R.SHI,Z.D.PARSONS,P.K.YUEN,S.S.DAVID,Y.IGARASHI, JRNL AUTH 2 B.F.EICHMAN JRNL TITL THE DNA GLYCOSYLASE ALKD USES A NON-BASE-FLIPPING MECHANISM JRNL TITL 2 TO EXCISE BULKY LESIONS. JRNL REF NATURE V. 527 254 2015 JRNL REFN ESSN 1476-4687 JRNL PMID 26524531 JRNL DOI 10.1038/NATURE15728 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6488 - 3.9577 1.00 2712 143 0.1345 0.1512 REMARK 3 2 3.9577 - 3.1416 1.00 2666 141 0.1447 0.1743 REMARK 3 3 3.1416 - 2.7445 1.00 2661 139 0.1643 0.2034 REMARK 3 4 2.7445 - 2.4936 1.00 2642 139 0.1648 0.1985 REMARK 3 5 2.4936 - 2.3149 1.00 2642 140 0.1559 0.1816 REMARK 3 6 2.3149 - 2.1784 1.00 2631 138 0.1464 0.1808 REMARK 3 7 2.1784 - 2.0693 1.00 2641 139 0.1475 0.2047 REMARK 3 8 2.0693 - 1.9792 1.00 2607 137 0.1683 0.1898 REMARK 3 9 1.9792 - 1.9030 1.00 2652 139 0.1642 0.2062 REMARK 3 10 1.9030 - 1.8374 1.00 2600 138 0.1707 0.2259 REMARK 3 11 1.8374 - 1.7799 1.00 2656 139 0.1844 0.2434 REMARK 3 12 1.7799 - 1.7290 1.00 2631 139 0.1960 0.2521 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2361 REMARK 3 ANGLE : 1.074 3272 REMARK 3 CHIRALITY : 0.045 350 REMARK 3 PLANARITY : 0.006 351 REMARK 3 DIHEDRAL : 18.292 898 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1745 31.5993 16.6104 REMARK 3 T TENSOR REMARK 3 T11: 0.1322 T22: 0.4194 REMARK 3 T33: 0.2260 T12: -0.0175 REMARK 3 T13: 0.0246 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 3.0199 L22: 6.2253 REMARK 3 L33: 1.8622 L12: 1.1401 REMARK 3 L13: 0.3466 L23: 1.7891 REMARK 3 S TENSOR REMARK 3 S11: -0.0148 S12: -0.3131 S13: 0.1688 REMARK 3 S21: 0.1457 S22: -0.1367 S23: 0.7250 REMARK 3 S31: 0.0769 S32: -0.6973 S33: 0.1148 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5560 45.2967 17.8524 REMARK 3 T TENSOR REMARK 3 T11: 0.3203 T22: 0.3309 REMARK 3 T33: 0.3397 T12: -0.0326 REMARK 3 T13: 0.1344 T23: -0.1493 REMARK 3 L TENSOR REMARK 3 L11: 5.2306 L22: 0.8767 REMARK 3 L33: 3.4348 L12: -1.4856 REMARK 3 L13: -3.3026 L23: 0.1546 REMARK 3 S TENSOR REMARK 3 S11: 0.5952 S12: -0.5348 S13: 0.9635 REMARK 3 S21: 0.3109 S22: -0.3114 S23: 0.1472 REMARK 3 S31: -0.7672 S32: -0.1383 S33: -0.3698 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5500 34.9657 18.5205 REMARK 3 T TENSOR REMARK 3 T11: 0.1259 T22: 0.2524 REMARK 3 T33: 0.1572 T12: 0.0158 REMARK 3 T13: 0.0014 T23: -0.0482 REMARK 3 L TENSOR REMARK 3 L11: 4.5273 L22: 2.5481 REMARK 3 L33: 3.8122 L12: 0.9543 REMARK 3 L13: -1.1886 L23: -0.5283 REMARK 3 S TENSOR REMARK 3 S11: 0.1164 S12: -0.4595 S13: 0.0634 REMARK 3 S21: 0.1299 S22: -0.1507 S23: 0.0156 REMARK 3 S31: -0.0322 S32: -0.1109 S33: -0.0424 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3307 25.1938 9.6556 REMARK 3 T TENSOR REMARK 3 T11: 0.1756 T22: 0.3709 REMARK 3 T33: 0.2463 T12: -0.0470 REMARK 3 T13: 0.0166 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 3.4661 L22: 5.0427 REMARK 3 L33: 5.6913 L12: 1.9375 REMARK 3 L13: -2.1369 L23: -1.8999 REMARK 3 S TENSOR REMARK 3 S11: -0.0677 S12: -0.0946 S13: -0.3266 REMARK 3 S21: -0.2486 S22: -0.0172 S23: 0.1544 REMARK 3 S31: 0.4935 S32: -0.5717 S33: 0.0126 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5415 23.2950 7.2507 REMARK 3 T TENSOR REMARK 3 T11: 0.1458 T22: 0.1964 REMARK 3 T33: 0.1796 T12: -0.0176 REMARK 3 T13: 0.0258 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 2.1593 L22: 2.3643 REMARK 3 L33: 3.3417 L12: -0.1769 REMARK 3 L13: -0.8834 L23: 2.2460 REMARK 3 S TENSOR REMARK 3 S11: -0.0443 S12: -0.1326 S13: -0.3078 REMARK 3 S21: 0.2180 S22: -0.1694 S23: 0.1579 REMARK 3 S31: 0.3871 S32: -0.1930 S33: 0.1824 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9065 24.0438 1.0609 REMARK 3 T TENSOR REMARK 3 T11: 0.1487 T22: 0.1396 REMARK 3 T33: 0.1522 T12: -0.0097 REMARK 3 T13: 0.0124 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.3221 L22: 1.4443 REMARK 3 L33: 0.7088 L12: -0.8393 REMARK 3 L13: 0.0216 L23: 0.3501 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: -0.0474 S13: -0.0413 REMARK 3 S21: 0.0241 S22: 0.0149 S23: 0.0613 REMARK 3 S31: -0.0113 S32: -0.0836 S33: -0.0017 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3961 29.2655 -0.3025 REMARK 3 T TENSOR REMARK 3 T11: 0.1429 T22: 0.1077 REMARK 3 T33: 0.1473 T12: -0.0068 REMARK 3 T13: 0.0111 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.1543 L22: 1.5327 REMARK 3 L33: 1.1368 L12: -0.2130 REMARK 3 L13: 0.0929 L23: 0.2444 REMARK 3 S TENSOR REMARK 3 S11: 0.0397 S12: 0.0151 S13: 0.0279 REMARK 3 S21: 0.0000 S22: -0.0428 S23: -0.0579 REMARK 3 S31: -0.0419 S32: 0.0663 S33: -0.0278 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8643 24.5902 1.4891 REMARK 3 T TENSOR REMARK 3 T11: 0.1218 T22: 0.1569 REMARK 3 T33: 0.2394 T12: -0.0012 REMARK 3 T13: 0.0024 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.4108 L22: 5.3123 REMARK 3 L33: 5.9851 L12: -1.2213 REMARK 3 L13: 0.6051 L23: -2.9209 REMARK 3 S TENSOR REMARK 3 S11: 0.0968 S12: 0.0682 S13: -0.0745 REMARK 3 S21: -0.0446 S22: -0.2711 S23: -0.4314 REMARK 3 S31: 0.0991 S32: 0.6827 S33: 0.1211 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0800 32.8015 4.7032 REMARK 3 T TENSOR REMARK 3 T11: 0.1471 T22: 0.1317 REMARK 3 T33: 0.2224 T12: -0.0380 REMARK 3 T13: -0.0079 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 3.3535 L22: 5.5630 REMARK 3 L33: 4.8729 L12: -1.3827 REMARK 3 L13: 1.0717 L23: -1.2829 REMARK 3 S TENSOR REMARK 3 S11: -0.0843 S12: -0.2080 S13: 0.0297 REMARK 3 S21: 0.4640 S22: -0.0943 S23: -0.4101 REMARK 3 S31: -0.3289 S32: 0.1819 S33: 0.1497 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8611 33.9061 17.5098 REMARK 3 T TENSOR REMARK 3 T11: 0.3373 T22: 0.2200 REMARK 3 T33: 0.2105 T12: 0.0063 REMARK 3 T13: -0.0205 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 4.1183 L22: 4.6561 REMARK 3 L33: 6.3393 L12: 0.5420 REMARK 3 L13: -0.6424 L23: -3.3484 REMARK 3 S TENSOR REMARK 3 S11: 0.0599 S12: -0.5806 S13: -0.4246 REMARK 3 S21: 0.7063 S22: -0.1266 S23: -0.1816 REMARK 3 S31: 0.3088 S32: 0.3809 S33: 0.0869 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4418 38.0685 18.2924 REMARK 3 T TENSOR REMARK 3 T11: 0.2862 T22: 0.2000 REMARK 3 T33: 0.2138 T12: -0.0127 REMARK 3 T13: 0.0201 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 5.5715 L22: 2.6189 REMARK 3 L33: 4.0452 L12: 0.9584 REMARK 3 L13: -2.3570 L23: -1.4434 REMARK 3 S TENSOR REMARK 3 S11: 0.0654 S12: -0.5566 S13: -0.2836 REMARK 3 S21: 0.1608 S22: -0.2883 S23: 0.1696 REMARK 3 S31: 0.0631 S32: 0.1089 S33: 0.0444 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CLC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33421 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.729 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.36200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3BVS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% W/V PEG8000, 50 MM HEPES, PH 7.0, REMARK 280 50 MM CALCIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.69950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.72250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.69950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.72250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 ILE A 52 REMARK 465 HIS A 53 REMARK 465 THR A 54 REMARK 465 GLY A 226 REMARK 465 ILE A 227 REMARK 465 ASN A 228 REMARK 465 ASN A 229 REMARK 465 GLU A 230 REMARK 465 LYS A 231 REMARK 465 ILE A 232 REMARK 465 GLY A 233 REMARK 465 GLU A 234 REMARK 465 THR A 235 REMARK 465 LEU A 236 REMARK 465 SER A 237 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 5 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 118 -66.66 -91.20 REMARK 500 LYS A 158 -120.28 52.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CL3 RELATED DB: PDB REMARK 900 RELATED ID: 5CL4 RELATED DB: PDB REMARK 900 RELATED ID: 5CL5 RELATED DB: PDB REMARK 900 RELATED ID: 5CL6 RELATED DB: PDB REMARK 900 RELATED ID: 5CL7 RELATED DB: PDB REMARK 900 RELATED ID: 5CL8 RELATED DB: PDB REMARK 900 RELATED ID: 5CL9 RELATED DB: PDB REMARK 900 RELATED ID: 5CLA RELATED DB: PDB REMARK 900 RELATED ID: 5CLB RELATED DB: PDB REMARK 900 RELATED ID: 5CLD RELATED DB: PDB REMARK 900 RELATED ID: 5CLE RELATED DB: PDB DBREF 5CLC A 1 237 UNP R8GWR7 R8GWR7_BACCE 1 237 DBREF 5CLC B 1 9 PDB 5CLC 5CLC 1 9 DBREF 5CLC C 10 18 PDB 5CLC 5CLC 10 18 SEQADV 5CLC GLY A -3 UNP R8GWR7 EXPRESSION TAG SEQADV 5CLC PRO A -2 UNP R8GWR7 EXPRESSION TAG SEQADV 5CLC VAL A -1 UNP R8GWR7 EXPRESSION TAG SEQADV 5CLC PRO A 0 UNP R8GWR7 EXPRESSION TAG SEQRES 1 A 241 GLY PRO VAL PRO MET HIS PRO PHE VAL LYS ALA LEU GLN SEQRES 2 A 241 GLU HIS PHE THR ALA HIS GLN ASN PRO GLU LYS ALA GLU SEQRES 3 A 241 PRO MET ALA ARG TYR MET LYS ASN HIS PHE LEU PHE LEU SEQRES 4 A 241 GLY ILE GLN THR PRO GLU ARG ARG GLN LEU LEU LYS ASP SEQRES 5 A 241 ILE ILE GLN ILE HIS THR LEU PRO ASP GLN LYS ASP PHE SEQRES 6 A 241 GLN ILE ILE ILE ARG GLU LEU TRP ASP LEU PRO GLU ARG SEQRES 7 A 241 GLU PHE GLN ALA ALA ALA LEU ASP ILE MET GLN LYS TYR SEQRES 8 A 241 LYS LYS HIS ILE ASN GLU THR HIS ILE PRO PHE LEU GLU SEQRES 9 A 241 GLU LEU ILE VAL THR LYS SER TRP TRP ASP SER VAL ASP SEQRES 10 A 241 SER ILE VAL PRO THR PHE LEU GLY ASP ILE PHE LEU LYS SEQRES 11 A 241 HIS PRO GLU LEU ILE SER ALA TYR ILE PRO LYS TRP ILE SEQRES 12 A 241 ALA SER ASP ASN ILE TRP LEU GLN ARG ALA ALA ILE LEU SEQRES 13 A 241 PHE GLN LEU LYS TYR LYS GLN LYS MET ASP GLU GLU LEU SEQRES 14 A 241 LEU PHE TRP ILE ILE GLY GLN LEU HIS SER SER LYS GLU SEQRES 15 A 241 PHE PHE ILE GLN LYS ALA ILE GLY TRP VAL LEU ARG GLU SEQRES 16 A 241 TYR ALA LYS THR ASN PRO ASP VAL VAL TRP GLU TYR VAL SEQRES 17 A 241 GLN ASN ASN GLU LEU ALA PRO LEU SER LYS ARG GLU ALA SEQRES 18 A 241 ILE LYS HIS ILE LYS GLN ASN TYR GLY ILE ASN ASN GLU SEQRES 19 A 241 LYS ILE GLY GLU THR LEU SER SEQRES 1 B 9 DA DA DG DC DC DZM DC DC DC SEQRES 1 C 9 DT DG DG DG DT DG DG DC DT HET DZM B 6 22 HETNAM DZM 3-DEAZA-3-METHYLADENINE HETSYN DZM 1-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO- HETSYN 2 DZM PENTOFURANOSYL)-7-METHYL-1H-IMIDAZO[4,5-C]PYRIDIN-4- HETSYN 3 DZM AMINE FORMUL 2 DZM C12 H17 N4 O6 P FORMUL 4 HOH *284(H2 O) HELIX 1 AA1 HIS A 2 HIS A 15 1 14 HELIX 2 AA2 ASN A 17 MET A 28 1 12 HELIX 3 AA3 GLN A 38 GLN A 51 1 14 HELIX 4 AA4 ASP A 57 LYS A 59 5 3 HELIX 5 AA5 ASP A 60 ASP A 70 1 11 HELIX 6 AA6 GLU A 73 LYS A 86 1 14 HELIX 7 AA7 TYR A 87 ILE A 91 5 5 HELIX 8 AA8 ASN A 92 THR A 94 5 3 HELIX 9 AA9 HIS A 95 THR A 105 1 11 HELIX 10 AB1 TRP A 108 VAL A 116 1 9 HELIX 11 AB2 THR A 118 HIS A 127 1 10 HELIX 12 AB3 PRO A 128 ALA A 133 5 6 HELIX 13 AB4 TYR A 134 SER A 141 1 8 HELIX 14 AB5 ASN A 143 PHE A 153 1 11 HELIX 15 AB6 TYR A 157 MET A 161 5 5 HELIX 16 AB7 ASP A 162 HIS A 174 1 13 HELIX 17 AB8 GLU A 178 LYS A 194 1 17 HELIX 18 AB9 ASN A 196 ASN A 207 1 12 HELIX 19 AC1 ALA A 210 LYS A 219 1 10 HELIX 20 AC2 ILE A 221 TYR A 225 5 5 LINK O3' DC B 5 P DZM B 6 1555 1555 1.61 LINK O3' DZM B 6 P DC B 7 1555 1555 1.61 CRYST1 127.399 55.445 47.558 90.00 106.36 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007849 0.000000 0.002304 0.00000 SCALE2 0.000000 0.018036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021914 0.00000