HEADER TRANSFERASE 16-JUL-15 5CM2 TITLE STRUCTURE OF Y. LIPOLYTICA TRM9-TRM112 COMPLEX, A METHYLTRANSFERASE TITLE 2 MODIFYING U34 IN THE ANTICODON LOOP OF SOME TRNAS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA METHYLTRANSFERASE; COMPND 3 CHAIN: Z; COMPND 4 FRAGMENT: UNP RESIDUES 38-234; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRNA METHYLTRANSFERASE ACTIVATOR SUBUNIT; COMPND 8 CHAIN: M; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YARROWIA LIPOLYTICA CLIB122; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 284591; SOURCE 5 GENE: YALI0_D12837G; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: YARROWIA LIPOLYTICA CLIB122; SOURCE 10 ORGANISM_COMMON: YEAST; SOURCE 11 ORGANISM_TAXID: 284591; SOURCE 12 GENE: YALI0_E24761G; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CLASS I METHYLTRANSFERASE, TRNA METHYLTRANSFERASE, METHYLATION, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LETOQUART,N.VAN TRAN,V.CAROLINE,A.ALEKSANDROV,N.LAZAR,H.VAN AUTHOR 2 TILBEURGH,D.LIGER,M.GRAILLE REVDAT 3 17-MAR-21 5CM2 1 TITLE REVDAT 2 23-DEC-15 5CM2 1 JRNL REVDAT 1 21-OCT-15 5CM2 0 JRNL AUTH J.LETOQUART,N.VAN TRAN,V.CAROLINE,A.ALEKSANDROV,N.LAZAR, JRNL AUTH 2 H.VAN TILBEURGH,D.LIGER,M.GRAILLE JRNL TITL INSIGHTS INTO MOLECULAR PLASTICITY IN PROTEIN COMPLEXES FROM JRNL TITL 2 TRM9-TRM112 TRNA MODIFYING ENZYME CRYSTAL STRUCTURE. JRNL REF NUCLEIC ACIDS RES. V. 43 10989 2015 JRNL REFN ESSN 1362-4962 JRNL PMID 26438534 JRNL DOI 10.1093/NAR/GKV1009 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 16234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.5311 - 3.5970 0.97 2560 135 0.1820 0.2407 REMARK 3 2 3.5970 - 3.1425 0.99 2579 136 0.2240 0.2720 REMARK 3 3 3.1425 - 2.8552 1.00 2589 136 0.2422 0.2719 REMARK 3 4 2.8552 - 2.6506 1.00 2557 135 0.2467 0.3170 REMARK 3 5 2.6506 - 2.4943 0.98 2520 132 0.2439 0.3005 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2517 REMARK 3 ANGLE : 1.193 3409 REMARK 3 CHIRALITY : 0.050 369 REMARK 3 PLANARITY : 0.005 445 REMARK 3 DIHEDRAL : 15.355 925 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CM2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211845. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-12; 11-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SOLEIL; SOLEIL REMARK 200 BEAMLINE : PROXIMA 1; PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801; 1.2819, 1.2826, 1.2753 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL; CHANNEL REMARK 200 CUT CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M; PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16239 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.494 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.850 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.85 REMARK 200 R MERGE FOR SHELL (I) : 0.50100 REMARK 200 R SYM FOR SHELL (I) : 0.50100 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRI-SODIUM CITRATE, 20% REMARK 280 POLYETHYLENE GLYCOL 4000 (PEG4K), 20% 2-PROPANOL, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 27555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 28555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 31555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 32555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 35555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 36555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 37555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 38555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 39555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 40555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 41555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 42555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 43555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 44555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 45555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 46555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 47555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 48555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 88.10000 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 88.10000 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 88.10000 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 88.10000 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 88.10000 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 88.10000 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 88.10000 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 88.10000 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 88.10000 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 88.10000 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 88.10000 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 88.10000 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 88.10000 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 88.10000 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 88.10000 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 88.10000 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 88.10000 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 88.10000 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 88.10000 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 88.10000 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 88.10000 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 88.10000 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 88.10000 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 88.10000 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 88.10000 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 88.10000 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 88.10000 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 88.10000 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 88.10000 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 88.10000 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 88.10000 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 88.10000 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 88.10000 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 88.10000 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 88.10000 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 88.10000 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 88.10000 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 88.10000 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 88.10000 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 88.10000 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 88.10000 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 88.10000 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 88.10000 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 88.10000 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 88.10000 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 88.10000 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 88.10000 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 88.10000 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 88.10000 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 88.10000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: Z, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET Z 36 REMARK 465 ALA Z 37 REMARK 465 ASN Z 38 REMARK 465 LYS Z 161 REMARK 465 THR Z 162 REMARK 465 SER Z 163 REMARK 465 ARG Z 164 REMARK 465 ARG Z 165 REMARK 465 GLY Z 166 REMARK 465 TRP Z 167 REMARK 465 HIS Z 168 REMARK 465 GLU Z 169 REMARK 465 GLY Z 170 REMARK 465 MET Z 171 REMARK 465 SER Z 234 REMARK 465 HIS Z 235 REMARK 465 HIS Z 236 REMARK 465 HIS Z 237 REMARK 465 HIS Z 238 REMARK 465 HIS Z 239 REMARK 465 HIS Z 240 REMARK 465 PRO M 125 REMARK 465 PRO M 126 REMARK 465 HIS M 127 REMARK 465 LEU M 128 REMARK 465 ALA M 129 REMARK 465 ALA M 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP Z 174 OH TYR Z 193 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP Z 96 102.94 -166.39 REMARK 500 HIS Z 126 2.53 -66.11 REMARK 500 ASP Z 232 -117.28 -87.60 REMARK 500 GLU M 36 126.63 -27.21 REMARK 500 ASN M 117 77.89 22.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN M 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS M 11 SG REMARK 620 2 CYS M 16 SG 114.9 REMARK 620 3 CYS M 106 SG 108.9 124.5 REMARK 620 4 CYS M 109 SG 94.7 114.1 93.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN M 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QTT RELATED DB: PDB REMARK 900 RELATED ID: 4QTU RELATED DB: PDB DBREF 5CM2 Z 38 234 UNP Q6C999 Q6C999_YARLI 38 234 DBREF 5CM2 M 1 130 UNP Q6C4P5 Q6C4P5_YARLI 1 130 SEQADV 5CM2 MET Z 36 UNP Q6C999 INITIATING METHIONINE SEQADV 5CM2 ALA Z 37 UNP Q6C999 EXPRESSION TAG SEQADV 5CM2 HIS Z 235 UNP Q6C999 EXPRESSION TAG SEQADV 5CM2 HIS Z 236 UNP Q6C999 EXPRESSION TAG SEQADV 5CM2 HIS Z 237 UNP Q6C999 EXPRESSION TAG SEQADV 5CM2 HIS Z 238 UNP Q6C999 EXPRESSION TAG SEQADV 5CM2 HIS Z 239 UNP Q6C999 EXPRESSION TAG SEQADV 5CM2 HIS Z 240 UNP Q6C999 EXPRESSION TAG SEQRES 1 Z 205 MET ALA ASN THR ARG TYR LYS PRO TRP PRO ILE VAL GLU SEQRES 2 Z 205 LYS PHE LEU ARG ASP GLN LYS ASP HIS SER VAL GLY VAL SEQRES 3 Z 205 ASP ILE GLY CYS GLY ASN GLY LYS TYR MET GLY VAL ASN SEQRES 4 Z 205 ASN LYS VAL PHE ILE VAL GLY SER ASP ARG SER ASP GLU SEQRES 5 Z 205 LEU VAL LYS LEU ALA HIS ASP MET ASP PRO SER ARG GLU SEQRES 6 Z 205 VAL VAL VAL CYS ASP ALA ILE ASP ASN ALA HIS PRO GLU SEQRES 7 Z 205 GLY ARG PHE ASP PHE ALA ILE SER ILE ALA VAL ILE HIS SEQRES 8 Z 205 HIS PHE SER THR PRO GLU ARG ARG ARG GLU ALA VAL ARG SEQRES 9 Z 205 ALA ILE LEU ASN THR LEU ARG PRO ASP GLY ARG ALA LEU SEQRES 10 Z 205 ILE TYR VAL TRP ALA LEU GLU GLN LYS THR SER ARG ARG SEQRES 11 Z 205 GLY TRP HIS GLU GLY MET ASP GLN ASP VAL MET VAL PRO SEQRES 12 Z 205 TRP VAL LYS LYS VAL ASP GLY VAL GLU GLU VAL ARG TYR SEQRES 13 Z 205 ARG TYR TYR HIS LEU TYR ARG GLU GLY GLU ILE THR SER SEQRES 14 Z 205 ASP VAL GLU ALA SER GLY GLY LYS VAL LEU GLU THR GLY SEQRES 15 Z 205 TYR GLU LYS ASP ASN TRP TRP VAL VAL ALA LYS ARG GLY SEQRES 16 Z 205 ASP ASP TRP SER HIS HIS HIS HIS HIS HIS SEQRES 1 M 130 MET LYS PHE LEU THR SER ASN PHE VAL GLN CYS ALA SER SEQRES 2 M 130 LYS GLN CYS VAL SER SER GLY ASN ALA PHE PRO LEU THR SEQRES 3 M 130 PHE SER ALA LEU GLU MET VAL GLN GLN GLU ALA GLU PHE SEQRES 4 M 130 ASP PRO GLU PHE LEU VAL SER MET LEU GLU ARG ILE ASP SEQRES 5 M 130 TRP ALA ALA LEU VAL LYS VAL ALA ASN ASP LEU GLY ASN SEQRES 6 M 130 GLU SER LEU PRO ASP VAL LYS PRO GLU ILE ASP GLU PRO SEQRES 7 M 130 PHE ALA GLU GLY ASN GLN GLY LEU LEU GLN GLU LEU HIS SEQRES 8 M 130 SER LEU LEU ILE GLU THR CYS ILE VAL GLU GLY THR MET SEQRES 9 M 130 LYS CYS GLU ASN CYS GLY HIS THR TYR PHE ILE LYS ASN SEQRES 10 M 130 SER ILE PRO ASN PHE LEU LEU PRO PRO HIS LEU ALA ALA HET ZN M 201 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *76(H2 O) HELIX 1 AA1 PRO Z 45 ASP Z 53 1 9 HELIX 2 AA2 SER Z 85 ASP Z 96 1 12 HELIX 3 AA3 VAL Z 124 PHE Z 128 5 5 HELIX 4 AA4 THR Z 130 THR Z 144 1 15 HELIX 5 AA5 GLY Z 200 ALA Z 208 1 9 HELIX 6 AA6 PHE M 3 VAL M 9 5 7 HELIX 7 AA7 SER M 13 SER M 19 1 7 HELIX 8 AA8 ASP M 40 LEU M 48 1 9 HELIX 9 AA9 ASP M 52 LEU M 63 1 12 HELIX 10 AB1 ALA M 80 GLY M 82 5 3 HELIX 11 AB2 ASN M 83 ILE M 95 1 13 SHEET 1 AA1 7 GLU Z 100 VAL Z 103 0 SHEET 2 AA1 7 PHE Z 78 ASP Z 83 1 N GLY Z 81 O VAL Z 102 SHEET 3 AA1 7 VAL Z 59 ILE Z 63 1 N GLY Z 60 O PHE Z 78 SHEET 4 AA1 7 PHE Z 116 ILE Z 122 1 O ASP Z 117 N VAL Z 59 SHEET 5 AA1 7 LEU Z 145 TRP Z 156 1 O ARG Z 146 N PHE Z 116 SHEET 6 AA1 7 ASN Z 222 ARG Z 229 -1 O ALA Z 227 N ALA Z 151 SHEET 7 AA1 7 GLY Z 211 GLU Z 219 -1 N LYS Z 212 O LYS Z 228 SHEET 1 AA2 2 ASP Z 174 VAL Z 183 0 SHEET 2 AA2 2 VAL Z 186 HIS Z 195 -1 O ARG Z 190 N TRP Z 179 SHEET 1 AA3 4 THR M 26 GLN M 34 0 SHEET 2 AA3 4 THR M 97 LYS M 105 -1 O LYS M 105 N THR M 26 SHEET 3 AA3 4 THR M 112 LYS M 116 -1 O ILE M 115 N GLY M 102 SHEET 4 AA3 4 ILE M 119 PRO M 120 -1 O ILE M 119 N LYS M 116 LINK SG CYS M 11 ZN ZN M 201 1555 1555 2.62 LINK SG CYS M 16 ZN ZN M 201 1555 1555 2.20 LINK SG CYS M 106 ZN ZN M 201 1555 1555 2.35 LINK SG CYS M 109 ZN ZN M 201 1555 1555 2.66 CISPEP 1 PHE M 23 PRO M 24 0 -2.39 CISPEP 2 ASN M 117 SER M 118 0 -17.58 SITE 1 AC1 4 CYS M 11 CYS M 16 CYS M 106 CYS M 109 CRYST1 176.200 176.200 176.200 90.00 90.00 90.00 I 4 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005675 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005675 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005675 0.00000