HEADER SIGNALING PROTEIN 16-JUL-15 5CM4 TITLE CRYSTAL STRUCTURE OF HUMAN FRIZZLED 4 CYSTEINE-RICH DOMAIN (CRD) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRIZZLED-4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 40-164; COMPND 5 SYNONYM: HFZ4,FZE4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FZD4; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDNA6-FZ4CRD-FCH6 KEYWDS WNT SIGNALING, NORRIN SIGNALING, FRIZZLED 4 EXTRACELLUAR DOMAIN, KEYWDS 2 CYSTEINE-RICH DOMAIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.KE,N.PARKER,X.GU,C.ZHANG,K.MELCHER,H.E.XU REVDAT 7 06-NOV-24 5CM4 1 REMARK REVDAT 6 27-SEP-23 5CM4 1 HETSYN REVDAT 5 29-JUL-20 5CM4 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 25-DEC-19 5CM4 1 REMARK REVDAT 3 27-SEP-17 5CM4 1 REMARK REVDAT 2 16-SEP-15 5CM4 1 JRNL REVDAT 1 12-AUG-15 5CM4 0 JRNL AUTH G.SHEN,J.KE,Z.WANG,Z.CHENG,X.GU,Y.WEI,K.MELCHER,H.E.XU,W.XU JRNL TITL STRUCTURAL BASIS OF THE NORRIN-FRIZZLED 4 INTERACTION. JRNL REF CELL RES. V. 25 1078 2015 JRNL REFN ISSN 1001-0602 JRNL PMID 26227961 JRNL DOI 10.1038/CR.2015.92 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 16764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 907 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1186 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3770 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.5050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1877 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : -1.00000 REMARK 3 B33 (A**2) : 0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.264 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.326 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2010 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2735 ; 1.819 ; 2.013 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 5.524 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;32.805 ;24.878 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 327 ;20.117 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.373 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 303 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1513 ; 0.009 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 966 ; 3.817 ; 6.083 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1204 ; 6.044 ; 9.104 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1044 ; 5.361 ; 6.868 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8083 ;13.266 ;58.253 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 44 A 164 4 REMARK 3 1 B 44 B 164 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 935 ; 0.36 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 935 ; 11.91 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5CM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.078 REMARK 200 MONOCHROMATOR : MONOCHROMATOR NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17684 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.99000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1IJY REMARK 200 REMARK 200 REMARK: ROD-SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE, 0.1 M TRI-NA REMARK 280 CITRATE PH 5.6 AND 0.2 M NA/K TARTRATE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.68500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.68500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.79150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.86900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.79150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.86900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.68500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.79150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.86900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.68500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.79150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.86900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 427 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 407 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 40 REMARK 465 GLU A 41 REMARK 465 GLU A 42 REMARK 465 ARG A 43 REMARK 465 GLU B 40 REMARK 465 GLU B 41 REMARK 465 GLU B 42 REMARK 465 ARG B 43 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 164 CG OD1 OD2 REMARK 470 GLU B 70 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 59 O5 NAG B 301 2.14 REMARK 500 ND2 ASN A 144 O5 NAG C 1 2.18 REMARK 500 ND2 ASN B 59 C2 NAG B 301 2.18 REMARK 500 ND2 ASN A 59 O5 NAG A 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 45 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 GLY A 163 N - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 CYS B 45 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 59 17.66 -140.28 REMARK 500 PRO A 162 62.10 -69.43 REMARK 500 ASN B 55 68.53 -117.60 REMARK 500 PRO B 162 76.48 -62.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CL1 RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE OF NORRIN WITH HUMAN FRIZZLED 4 CRD DBREF 5CM4 A 40 164 UNP Q9ULV1 FZD4_HUMAN 40 164 DBREF 5CM4 B 40 164 UNP Q9ULV1 FZD4_HUMAN 40 164 SEQRES 1 A 125 GLU GLU GLU ARG ARG CYS ASP PRO ILE ARG ILE SER MET SEQRES 2 A 125 CYS GLN ASN LEU GLY TYR ASN VAL THR LYS MET PRO ASN SEQRES 3 A 125 LEU VAL GLY HIS GLU LEU GLN THR ASP ALA GLU LEU GLN SEQRES 4 A 125 LEU THR THR PHE THR PRO LEU ILE GLN TYR GLY CYS SER SEQRES 5 A 125 SER GLN LEU GLN PHE PHE LEU CYS SER VAL TYR VAL PRO SEQRES 6 A 125 MET CYS THR GLU LYS ILE ASN ILE PRO ILE GLY PRO CYS SEQRES 7 A 125 GLY GLY MET CYS LEU SER VAL LYS ARG ARG CYS GLU PRO SEQRES 8 A 125 VAL LEU LYS GLU PHE GLY PHE ALA TRP PRO GLU SER LEU SEQRES 9 A 125 ASN CYS SER LYS PHE PRO PRO GLN ASN ASP HIS ASN HIS SEQRES 10 A 125 MET CYS MET GLU GLY PRO GLY ASP SEQRES 1 B 125 GLU GLU GLU ARG ARG CYS ASP PRO ILE ARG ILE SER MET SEQRES 2 B 125 CYS GLN ASN LEU GLY TYR ASN VAL THR LYS MET PRO ASN SEQRES 3 B 125 LEU VAL GLY HIS GLU LEU GLN THR ASP ALA GLU LEU GLN SEQRES 4 B 125 LEU THR THR PHE THR PRO LEU ILE GLN TYR GLY CYS SER SEQRES 5 B 125 SER GLN LEU GLN PHE PHE LEU CYS SER VAL TYR VAL PRO SEQRES 6 B 125 MET CYS THR GLU LYS ILE ASN ILE PRO ILE GLY PRO CYS SEQRES 7 B 125 GLY GLY MET CYS LEU SER VAL LYS ARG ARG CYS GLU PRO SEQRES 8 B 125 VAL LEU LYS GLU PHE GLY PHE ALA TRP PRO GLU SER LEU SEQRES 9 B 125 ASN CYS SER LYS PHE PRO PRO GLN ASN ASP HIS ASN HIS SEQRES 10 B 125 MET CYS MET GLU GLY PRO GLY ASP HET NAG C 1 14 HET NAG C 2 14 HET NAG A 301 14 HET NAG B 301 14 HET NAG B 302 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 7 HOH *51(H2 O) HELIX 1 AA1 ILE A 50 GLN A 54 5 5 HELIX 2 AA2 LEU A 71 THR A 80 1 10 HELIX 3 AA3 PHE A 82 GLY A 89 1 8 HELIX 4 AA4 GLN A 93 VAL A 103 1 11 HELIX 5 AA5 CYS A 117 PHE A 135 1 19 HELIX 6 AA6 PRO A 140 PHE A 148 5 9 HELIX 7 AA7 ILE B 50 GLN B 54 5 5 HELIX 8 AA8 LEU B 71 THR B 81 1 11 HELIX 9 AA9 PHE B 82 GLY B 89 1 8 HELIX 10 AB1 GLN B 93 VAL B 103 1 11 HELIX 11 AB2 CYS B 117 PHE B 135 1 19 HELIX 12 AB3 PRO B 140 PHE B 148 5 9 SHEET 1 AA1 2 ASP A 46 PRO A 47 0 SHEET 2 AA1 2 VAL A 60 THR A 61 -1 O THR A 61 N ASP A 46 SHEET 1 AA2 2 MET A 105 THR A 107 0 SHEET 2 AA2 2 ILE A 110 ILE A 114 -1 O ILE A 114 N MET A 105 SHEET 1 AA3 2 ASP B 46 PRO B 47 0 SHEET 2 AA3 2 VAL B 60 THR B 61 -1 O THR B 61 N ASP B 46 SHEET 1 AA4 2 MET B 105 THR B 107 0 SHEET 2 AA4 2 ILE B 110 ILE B 114 -1 O ILE B 114 N MET B 105 SSBOND 1 CYS A 45 CYS A 106 1555 1555 2.07 SSBOND 2 CYS A 53 CYS A 99 1555 1555 2.07 SSBOND 3 CYS A 90 CYS A 128 1555 1555 2.15 SSBOND 4 CYS A 117 CYS A 158 1555 1555 2.06 SSBOND 5 CYS A 121 CYS A 145 1555 1555 2.10 SSBOND 6 CYS B 45 CYS B 106 1555 1555 2.07 SSBOND 7 CYS B 53 CYS B 99 1555 1555 2.05 SSBOND 8 CYS B 90 CYS B 128 1555 1555 2.13 SSBOND 9 CYS B 117 CYS B 158 1555 1555 2.05 SSBOND 10 CYS B 121 CYS B 145 1555 1555 2.07 LINK ND2 ASN A 59 C1 NAG A 301 1555 1555 1.44 LINK ND2 ASN A 144 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN B 59 C1 NAG B 301 1555 1555 1.45 LINK ND2 ASN B 144 C1 NAG B 302 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 CISPEP 1 MET A 63 PRO A 64 0 5.71 CISPEP 2 MET B 63 PRO B 64 0 5.06 CRYST1 105.583 111.738 75.370 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009471 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008950 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013268 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.760262 -0.253659 -0.598046 -0.79836 1 MTRIX2 2 0.193493 0.790405 -0.581223 7.43207 1 MTRIX3 2 0.620131 -0.557599 -0.551834 -2.01529 1 CONECT 17 496 CONECT 79 443 CONECT 128 1908 CONECT 369 657 CONECT 443 79 CONECT 496 17 CONECT 577 902 CONECT 599 795 CONECT 657 369 CONECT 789 1880 CONECT 795 599 CONECT 902 577 CONECT 957 1432 CONECT 1019 1379 CONECT 1068 1922 CONECT 1305 1593 CONECT 1379 1019 CONECT 1432 957 CONECT 1513 1838 CONECT 1535 1731 CONECT 1593 1305 CONECT 1725 1936 CONECT 1731 1535 CONECT 1838 1513 CONECT 1880 789 1881 1891 CONECT 1881 1880 1882 1888 CONECT 1882 1881 1883 1889 CONECT 1883 1882 1884 1890 CONECT 1884 1883 1885 1891 CONECT 1885 1884 1892 CONECT 1886 1887 1888 1893 CONECT 1887 1886 CONECT 1888 1881 1886 CONECT 1889 1882 CONECT 1890 1883 1894 CONECT 1891 1880 1884 CONECT 1892 1885 CONECT 1893 1886 CONECT 1894 1890 1895 1905 CONECT 1895 1894 1896 1902 CONECT 1896 1895 1897 1903 CONECT 1897 1896 1898 1904 CONECT 1898 1897 1899 1905 CONECT 1899 1898 1906 CONECT 1900 1901 1902 1907 CONECT 1901 1900 CONECT 1902 1895 1900 CONECT 1903 1896 CONECT 1904 1897 CONECT 1905 1894 1898 CONECT 1906 1899 CONECT 1907 1900 CONECT 1908 128 1909 1919 CONECT 1909 1908 1910 1916 CONECT 1910 1909 1911 1917 CONECT 1911 1910 1912 1918 CONECT 1912 1911 1913 1919 CONECT 1913 1912 1920 CONECT 1914 1915 1916 1921 CONECT 1915 1914 CONECT 1916 1909 1914 CONECT 1917 1910 CONECT 1918 1911 CONECT 1919 1908 1912 CONECT 1920 1913 CONECT 1921 1914 CONECT 1922 1068 1923 1933 CONECT 1923 1922 1924 1930 CONECT 1924 1923 1925 1931 CONECT 1925 1924 1926 1932 CONECT 1926 1925 1927 1933 CONECT 1927 1926 1934 CONECT 1928 1929 1930 1935 CONECT 1929 1928 CONECT 1930 1923 1928 CONECT 1931 1924 CONECT 1932 1925 CONECT 1933 1922 1926 CONECT 1934 1927 CONECT 1935 1928 CONECT 1936 1725 1937 1947 CONECT 1937 1936 1938 1944 CONECT 1938 1937 1939 1945 CONECT 1939 1938 1940 1946 CONECT 1940 1939 1941 1947 CONECT 1941 1940 1948 CONECT 1942 1943 1944 1949 CONECT 1943 1942 CONECT 1944 1937 1942 CONECT 1945 1938 CONECT 1946 1939 CONECT 1947 1936 1940 CONECT 1948 1941 CONECT 1949 1942 MASTER 363 0 5 12 8 0 0 12 1998 2 94 20 END