HEADER SIGNALING PROTEIN 16-JUL-15 5CM8 TITLE STRUCTURAL BASIS FOR THE SELECTIVITY OF GUANINE NUCLEOTIDE EXCHANGE TITLE 2 FACTORS FOR THE SMALL G-PROTEIN RAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAL GUANINE NUCLEOTIDE DISSOCIATION STIMULATOR-LIKE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 50-514; COMPND 5 SYNONYM: RALGDS-LIKE 2,RALGDS-LIKE FACTOR,RAS-ASSOCIATED PROTEIN COMPND 6 RAB2L; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RAS-RELATED PROTEIN RAL-A; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: RAL; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RGL2, RAB2L, RLF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: CK600; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P3; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 13 ORGANISM_COMMON: FRUIT FLY; SOURCE 14 ORGANISM_TAXID: 7227; SOURCE 15 GENE: RALA, CG2849; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: CK600; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX4T3 KEYWDS COMPLEX G-PROTEIN EXCHANGE FACTOR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.POPOVIC,A.SCHOUTEN,H.REHMANN REVDAT 3 10-JAN-24 5CM8 1 REMARK REVDAT 2 03-FEB-16 5CM8 1 JRNL REVDAT 1 13-JAN-16 5CM8 0 JRNL AUTH M.POPOVIC,A.SCHOUTEN,M.RENSEN-DE LEEUW,H.REHMANN JRNL TITL THE STRUCTURE OF THE GUANINE NUCLEOTIDE EXCHANGE FACTOR RLF JRNL TITL 2 IN COMPLEX WITH THE SMALL G-PROTEIN RAL IDENTIFIES JRNL TITL 3 CONFORMATIONAL INTERMEDIATES OF THE EXCHANGE REACTION AND JRNL TITL 4 THE BASIS FOR THE SELECTIVITY. JRNL REF J.STRUCT.BIOL. V. 193 106 2016 JRNL REFN ESSN 1095-8657 JRNL PMID 26687416 JRNL DOI 10.1016/J.JSB.2015.12.006 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.322 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1159 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1654 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4589 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.13000 REMARK 3 B22 (A**2) : 4.09000 REMARK 3 B33 (A**2) : -2.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.792 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.391 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.329 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.198 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.864 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4677 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6338 ; 0.927 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 582 ; 4.506 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 221 ;34.415 ;22.896 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 776 ;17.457 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;14.241 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 712 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3578 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2927 ; 0.339 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4694 ; 0.630 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1750 ; 0.637 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1644 ; 1.165 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5CM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211857. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.45 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23162 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.210 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4JGW AS POLY ALA MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 200 MM AMMONIUM ACETATE, REMARK 280 100 MM BIS-TRIS PROPANE, PH 7.45, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.55500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.24500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.55500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.24500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 42 REMARK 465 PRO A 43 REMARK 465 LEU A 44 REMARK 465 GLY A 45 REMARK 465 SER A 46 REMARK 465 PRO A 47 REMARK 465 ASN A 48 REMARK 465 SER A 49 REMARK 465 GLU A 50 REMARK 465 GLU A 51 REMARK 465 GLU A 52 REMARK 465 ALA A 53 REMARK 465 ALA A 196 REMARK 465 ARG A 197 REMARK 465 GLU A 198 REMARK 465 GLY A 199 REMARK 465 VAL A 200 REMARK 465 VAL A 201 REMARK 465 GLY A 202 REMARK 465 VAL A 215 REMARK 465 ASP A 216 REMARK 465 PRO A 217 REMARK 465 ARG A 218 REMARK 465 ALA A 219 REMARK 465 PRO A 220 REMARK 465 ASP A 221 REMARK 465 LEU A 222 REMARK 465 PRO A 223 REMARK 465 LYS A 224 REMARK 465 PRO A 225 REMARK 465 LEU A 226 REMARK 465 ALA A 227 REMARK 465 LEU A 228 REMARK 465 PRO A 229 REMARK 465 GLY A 230 REMARK 465 ASP A 231 REMARK 465 SER A 232 REMARK 465 GLN A 403 REMARK 465 GLU A 404 REMARK 465 VAL A 405 REMARK 465 LYS A 406 REMARK 465 PRO A 407 REMARK 465 GLN A 408 REMARK 465 PRO A 409 REMARK 465 PRO A 410 REMARK 465 VAL A 411 REMARK 465 GLU A 412 REMARK 465 PRO A 413 REMARK 465 HIS A 414 REMARK 465 SER A 415 REMARK 465 LYS A 416 REMARK 465 LYS A 417 REMARK 465 ALA A 418 REMARK 465 PRO A 419 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 LYS B 4 REMARK 465 PRO B 5 REMARK 465 THR B 6 REMARK 465 ALA B 7 REMARK 465 CYS B 126 REMARK 465 ASP B 127 REMARK 465 LEU B 128 REMARK 465 SER B 180 REMARK 465 LYS B 181 REMARK 465 ALA B 182 REMARK 465 THR B 183 REMARK 465 SER B 184 REMARK 465 GLY B 185 REMARK 465 ARG B 186 REMARK 465 ALA B 187 REMARK 465 LYS B 188 REMARK 465 ASP B 189 REMARK 465 ARG B 190 REMARK 465 CYS B 191 REMARK 465 LYS B 192 REMARK 465 LYS B 193 REMARK 465 ARG B 194 REMARK 465 ARG B 195 REMARK 465 LEU B 196 REMARK 465 LYS B 197 REMARK 465 CYS B 198 REMARK 465 THR B 199 REMARK 465 LEU B 200 REMARK 465 LEU B 201 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 ASP B 95 CG OD1 OD2 REMARK 470 ASN B 129 CG OD1 ND2 REMARK 470 LYS B 131 CG CD CE NZ REMARK 470 ARG B 132 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 133 CG CD CE NZ REMARK 470 VAL B 134 CG1 CG2 REMARK 470 PRO B 135 CG CD REMARK 470 LEU B 136 CG CD1 CD2 REMARK 470 SER B 137 OG REMARK 470 GLU B 138 CG CD OE1 OE2 REMARK 470 GLN B 140 CG CD OE1 NE2 REMARK 470 LEU B 141 CG CD1 CD2 REMARK 470 GLU B 152 CG CD OE1 OE2 REMARK 470 LYS B 163 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 63 -71.72 -11.62 REMARK 500 ALA A 112 -77.79 -94.08 REMARK 500 ASP A 238 1.58 -69.92 REMARK 500 ASP B 34 -92.85 -99.90 REMARK 500 PHE B 36 54.08 -118.12 REMARK 500 ASN B 113 31.25 -94.10 REMARK 500 PRO B 118 117.75 -35.40 REMARK 500 ASN B 124 -143.43 -101.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CM9 RELATED DB: PDB DBREF 5CM8 A 50 514 UNP Q61193 RGL2_MOUSE 50 514 DBREF 5CM8 B 1 201 UNP P48555 RALA_DROME 1 201 SEQADV 5CM8 GLY A 42 UNP Q61193 EXPRESSION TAG SEQADV 5CM8 PRO A 43 UNP Q61193 EXPRESSION TAG SEQADV 5CM8 LEU A 44 UNP Q61193 EXPRESSION TAG SEQADV 5CM8 GLY A 45 UNP Q61193 EXPRESSION TAG SEQADV 5CM8 SER A 46 UNP Q61193 EXPRESSION TAG SEQADV 5CM8 PRO A 47 UNP Q61193 EXPRESSION TAG SEQADV 5CM8 ASN A 48 UNP Q61193 EXPRESSION TAG SEQADV 5CM8 SER A 49 UNP Q61193 EXPRESSION TAG SEQADV 5CM8 TYR A 147 UNP Q61193 HIS 147 CONFLICT SEQADV 5CM8 THR A 402 UNP Q61193 MET 402 CONFLICT SEQADV 5CM8 GLY B -1 UNP P48555 EXPRESSION TAG SEQADV 5CM8 SER B 0 UNP P48555 EXPRESSION TAG SEQRES 1 A 473 GLY PRO LEU GLY SER PRO ASN SER GLU GLU GLU ALA SER SEQRES 2 A 473 VAL SER VAL TRP ASP GLU GLU GLU ASP GLY ALA THR PHE SEQRES 3 A 473 THR VAL THR SER ARG GLN TYR ARG PRO LEU ASP PRO LEU SEQRES 4 A 473 ALA PRO LEU PRO PRO PRO ARG SER SER ARG ARG LEU ARG SEQRES 5 A 473 ALA GLY THR LEU GLU ALA LEU VAL ARG HIS LEU LEU ASP SEQRES 6 A 473 ALA ARG THR ALA GLY ALA ASP MET MET PHE THR PRO ALA SEQRES 7 A 473 LEU LEU ALA THR HIS ARG ALA PHE THR SER THR PRO ALA SEQRES 8 A 473 LEU PHE GLY LEU VAL ALA ASP ARG LEU GLU ALA LEU GLU SEQRES 9 A 473 SER TYR PRO PRO GLY GLU LEU GLU ARG THR THR GLY VAL SEQRES 10 A 473 ALA ILE SER VAL LEU SER THR TRP LEU ALA SER HIS PRO SEQRES 11 A 473 GLU ASP PHE GLY SER GLU VAL LYS GLY GLN LEU ASP ARG SEQRES 12 A 473 LEU GLU SER PHE LEU LEU ARG THR GLY TYR ALA ALA ARG SEQRES 13 A 473 GLU GLY VAL VAL GLY GLY SER ALA ASP LEU ILE ARG ASN SEQRES 14 A 473 LEU ARG ALA ARG VAL ASP PRO ARG ALA PRO ASP LEU PRO SEQRES 15 A 473 LYS PRO LEU ALA LEU PRO GLY ASP SER PRO ALA ASP PRO SEQRES 16 A 473 THR ASP VAL LEU VAL PHE LEU ALA ASP HIS LEU ALA GLU SEQRES 17 A 473 GLN LEU THR LEU LEU ASP ALA GLU LEU PHE LEU ASN LEU SEQRES 18 A 473 ILE PRO SER GLN CYS LEU GLY GLY LEU TRP GLY HIS ARG SEQRES 19 A 473 ASP ARG PRO GLY HIS SER HIS LEU CYS PRO SER VAL ARG SEQRES 20 A 473 ALA THR VAL THR GLN PHE ASN LYS VAL ALA GLY ALA VAL SEQRES 21 A 473 VAL SER SER VAL LEU GLY ALA THR SER ILE GLY GLU GLY SEQRES 22 A 473 PRO ARG GLU VAL THR VAL ARG PRO LEU ARG PRO PRO GLN SEQRES 23 A 473 ARG ALA ARG LEU LEU GLU LYS TRP ILE ARG VAL ALA GLU SEQRES 24 A 473 GLU CYS ARG LEU LEU ARG ASN PHE SER SER VAL TYR ALA SEQRES 25 A 473 VAL VAL SER ALA LEU GLN SER SER PRO ILE HIS ARG LEU SEQRES 26 A 473 ARG ALA ALA TRP GLY GLU THR THR ARG ASP SER LEU ARG SEQRES 27 A 473 VAL PHE SER SER LEU CYS GLN ILE PHE SER GLU GLU ASP SEQRES 28 A 473 ASN TYR SER GLN SER ARG GLU LEU LEU THR GLN GLU VAL SEQRES 29 A 473 LYS PRO GLN PRO PRO VAL GLU PRO HIS SER LYS LYS ALA SEQRES 30 A 473 PRO ARG SER GLY PHE ARG GLY GLY GLY VAL VAL PRO TYR SEQRES 31 A 473 LEU GLY THR PHE LEU LYS ASP LEU VAL MET LEU ASP ALA SEQRES 32 A 473 ALA SER LYS ASP GLU LEU GLU ASN GLY TYR ILE ASN PHE SEQRES 33 A 473 ASP LYS ARG ARG LYS GLU PHE ALA ILE LEU SER GLU LEU SEQRES 34 A 473 LEU ARG LEU GLN LYS GLU CYS ARG GLY TYR ASP LEU ARG SEQRES 35 A 473 PRO ASN SER ASP ILE GLN GLN TRP LEU GLN GLY LEU GLN SEQRES 36 A 473 PRO LEU THR GLU ALA GLN SER HIS ARG VAL SER CYS GLU SEQRES 37 A 473 VAL GLU PRO PRO GLY SEQRES 1 B 203 GLY SER MET SER LYS LYS PRO THR ALA GLY PRO ALA LEU SEQRES 2 B 203 HIS LYS VAL ILE MET VAL GLY SER GLY GLY VAL GLY LYS SEQRES 3 B 203 SER ALA LEU THR LEU GLN PHE MET TYR ASP GLU PHE VAL SEQRES 4 B 203 GLU ASP TYR GLU PRO THR LYS ALA ASP SER TYR ARG LYS SEQRES 5 B 203 LYS VAL VAL LEU ASP GLY GLU GLU VAL GLN ILE ASP ILE SEQRES 6 B 203 LEU ASP THR ALA GLY GLN GLU ASP TYR ALA ALA ILE ARG SEQRES 7 B 203 ASP ASN TYR PHE ARG SER GLY GLU GLY PHE LEU CYS VAL SEQRES 8 B 203 PHE SER ILE THR ASP ASP GLU SER PHE GLN ALA THR GLN SEQRES 9 B 203 GLU PHE ARG GLU GLN ILE LEU ARG VAL LYS ASN ASP GLU SEQRES 10 B 203 SER ILE PRO PHE LEU LEU VAL GLY ASN LYS CYS ASP LEU SEQRES 11 B 203 ASN ASP LYS ARG LYS VAL PRO LEU SER GLU CYS GLN LEU SEQRES 12 B 203 ARG ALA GLN GLN TRP ALA VAL PRO TYR VAL GLU THR SER SEQRES 13 B 203 ALA LYS THR ARG GLU ASN VAL ASP LYS VAL PHE PHE ASP SEQRES 14 B 203 LEU MET ARG GLU ILE ARG SER ARG LYS THR GLU ASP SER SEQRES 15 B 203 LYS ALA THR SER GLY ARG ALA LYS ASP ARG CYS LYS LYS SEQRES 16 B 203 ARG ARG LEU LYS CYS THR LEU LEU FORMUL 3 HOH *45(H2 O) HELIX 1 AA1 THR A 96 LEU A 105 1 10 HELIX 2 AA2 MET A 115 HIS A 124 1 10 HELIX 3 AA3 ARG A 125 PHE A 127 5 3 HELIX 4 AA4 SER A 129 ALA A 143 1 15 HELIX 5 AA5 PRO A 148 HIS A 170 1 23 HELIX 6 AA6 PRO A 171 PHE A 174 5 4 HELIX 7 AA7 GLY A 175 GLU A 177 5 3 HELIX 8 AA8 VAL A 178 THR A 192 1 15 HELIX 9 AA9 SER A 204 ALA A 213 1 10 HELIX 10 AB1 ASP A 235 PHE A 242 5 8 HELIX 11 AB2 LEU A 243 ASN A 261 1 19 HELIX 12 AB3 ILE A 263 CYS A 267 5 5 HELIX 13 AB4 LEU A 268 GLY A 273 1 6 HELIX 14 AB5 CYS A 284 LEU A 306 1 23 HELIX 15 AB6 ARG A 324 ARG A 346 1 23 HELIX 16 AB7 ASN A 347 SER A 360 1 14 HELIX 17 AB8 SER A 360 ARG A 365 1 6 HELIX 18 AB9 LEU A 366 GLU A 372 1 7 HELIX 19 AC1 THR A 374 PHE A 388 1 15 HELIX 20 AC2 GLU A 390 THR A 402 1 13 HELIX 21 AC3 LEU A 432 SER A 446 1 15 HELIX 22 AC4 PHE A 457 ARG A 478 1 22 HELIX 23 AC5 ASN A 485 GLY A 494 1 10 HELIX 24 AC6 THR A 499 GLU A 511 1 13 HELIX 25 AC7 GLY B 23 TYR B 33 1 11 HELIX 26 AC8 ALA B 74 ARG B 81 1 8 HELIX 27 AC9 ASP B 95 ALA B 100 1 6 HELIX 28 AD1 ALA B 100 ARG B 110 1 11 HELIX 29 AD2 PRO B 135 GLN B 144 1 10 HELIX 30 AD3 GLN B 145 ALA B 147 5 3 HELIX 31 AD4 ASN B 160 GLU B 178 1 19 SHEET 1 AA1 4 VAL A 55 GLU A 62 0 SHEET 2 AA1 4 ALA A 65 ARG A 72 -1 O SER A 71 N SER A 56 SHEET 3 AA1 4 ARG A 87 GLY A 95 -1 O ARG A 93 N THR A 66 SHEET 4 AA1 4 ILE A 455 ASN A 456 -1 O ILE A 455 N GLY A 95 SHEET 1 AA2 2 ALA A 308 SER A 310 0 SHEET 2 AA2 2 VAL A 318 VAL A 320 -1 O THR A 319 N THR A 309 SHEET 1 AA3 6 ARG B 49 LEU B 54 0 SHEET 2 AA3 6 GLU B 57 ASP B 65 -1 O VAL B 59 N VAL B 52 SHEET 3 AA3 6 LEU B 11 VAL B 17 1 N HIS B 12 O ASP B 62 SHEET 4 AA3 6 GLY B 85 PHE B 90 1 O GLY B 85 N LYS B 13 SHEET 5 AA3 6 PHE B 119 GLY B 123 1 O LEU B 120 N CYS B 88 SHEET 6 AA3 6 TYR B 150 GLU B 152 1 O VAL B 151 N LEU B 121 CISPEP 1 ARG B 81 SER B 82 0 2.80 CRYST1 111.110 98.490 71.320 90.00 91.61 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009000 0.000000 0.000252 0.00000 SCALE2 0.000000 0.010153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014027 0.00000