HEADER TRANSFERASE 16-JUL-15 5CMJ TITLE GTA MUTANT WITH MERCURY - E303Q COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTO-BLOOD GROUP ABO SYSTEM TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 64-354); COMPND 5 SYNONYM: FUCOSYLGLYCOPROTEIN 3-ALPHA-GALACTOSYLTRANSFERASE, COMPND 6 FUCOSYLGLYCOPROTEIN ALPHA-N-ACETYLGALACTOSAMINYLTRANSFERASE, COMPND 7 GLYCOPROTEIN-FUCOSYLGALACTOSIDE ALPHA-N- COMPND 8 ACETYLGALACTOSAMINYLTRANSFERASE,GLYCOPROTEIN-FUCOSYLGALACTOSIDE COMPND 9 ALPHA-GALACTOSYLTRANSFERASE,HISTO-BLOOD GROUP A TRANSFERASE,A COMPND 10 TRANSFERASE,HISTO-BLOOD GROUP B TRANSFERASE,B TRANSFERASE,NAGAT; COMPND 11 EC: 2.4.1.40,2.4.1.37; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN ABO(H) BLOOD GROUP SYSTEM, GLYCOSYLTRANSFERASE, DOUBLE TURN KEYWDS 2 MOTIF, CATALYTIC DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.M.L.GAGNON,R.J.BLACKLER REVDAT 6 27-SEP-23 5CMJ 1 REMARK REVDAT 5 07-MAR-18 5CMJ 1 REMARK REVDAT 4 19-APR-17 5CMJ 1 JRNL REVDAT 3 11-JAN-17 5CMJ 1 JRNL REVDAT 2 07-DEC-16 5CMJ 1 JRNL REVDAT 1 20-JUL-16 5CMJ 0 JRNL AUTH R.J.BLACKLER,S.M.GAGNON,R.POLAKOWSKI,N.L.ROSE,R.B.ZHENG, JRNL AUTH 2 J.A.LETTS,A.R.JOHAL,B.SCHUMAN,S.N.BORISOVA,M.M.PALCIC, JRNL AUTH 3 S.V.EVANS JRNL TITL GLYCOSYLTRANSFER IN MUTANTS OF PUTATIVE CATALYTIC RESIDUE JRNL TITL 2 GLU303 OF THE HUMAN ABO(H) A AND B BLOOD GROUP JRNL TITL 3 GLYCOSYLTRANSFERASES GTA AND GTB PROCEEDS THROUGH A LABILE JRNL TITL 4 ACTIVE SITE. JRNL REF GLYCOBIOLOGY V. 27 370 2017 JRNL REFN ESSN 1460-2423 JRNL PMID 27979997 JRNL DOI 10.1093/GLYCOB/CWW117 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 31214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1662 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2221 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2191 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.015 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2264 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2153 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3080 ; 1.778 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4930 ; 0.891 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 269 ; 6.463 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;31.480 ;22.778 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 368 ;13.716 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;19.971 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 337 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2538 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 565 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1079 ; 2.337 ; 2.744 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1078 ; 2.323 ; 2.741 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1347 ; 3.229 ; 4.097 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5CMJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.4SSI REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32876 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 74.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.570 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.99 REMARK 200 R MERGE FOR SHELL (I) : 0.31800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1LZ0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 UL DROPS WITH 6-8 MG/ML PROTEIN, 70 REMARK 280 MM N-(2-ACETAMIDO)-2-IMINODIACETIC ACID (ADA) PH 7.5, 50 MM, REMARK 280 SODIUM ACETATE PH 4.6, 40 MM NACL, 5-8 MM MNCL2, 2.5% (V/V) 2- REMARK 280 METHYL-2,4-PENTANEDIOL (MPD), 5%(V/V) GLYCEROL, 2%(W/V) PEG 4000, REMARK 280 AND 0.3-0.5 MM 3-CHLOROMERCURI-2-METHOXYPROPYLUREA SUSPENDED REMARK 280 OVER 1 ML OF A RESEVOIR SOLUTION: 50 MM ADA PH 7.5, 10 MM MNCL2, REMARK 280 100 MM AMMONIUM SULFATE, 5%(V/V) MPD, 10%(V/V) GLYCEROL, AND 8- REMARK 280 10%(W/V) PEG 4000, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.79500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.79500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.45500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.35000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.45500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.79500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.35000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.45500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.79500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.35000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.45500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 177 REMARK 465 TYR A 178 REMARK 465 LYS A 179 REMARK 465 ARG A 180 REMARK 465 TRP A 181 REMARK 465 GLN A 182 REMARK 465 ASP A 183 REMARK 465 VAL A 184 REMARK 465 SER A 185 REMARK 465 MET A 186 REMARK 465 ARG A 187 REMARK 465 ARG A 188 REMARK 465 MET A 189 REMARK 465 GLU A 190 REMARK 465 MET A 191 REMARK 465 LYS A 346 REMARK 465 ASN A 347 REMARK 465 HIS A 348 REMARK 465 GLN A 349 REMARK 465 ALA A 350 REMARK 465 VAL A 351 REMARK 465 ARG A 352 REMARK 465 ASN A 353 REMARK 465 PRO A 354 REMARK 465 GLU A 355 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 176 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 197 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 614 O HOH A 667 2.13 REMARK 500 O HOH A 540 O HOH A 659 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 611 O HOH A 673 3554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 241 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 241 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 MET A 288 CG - SD - CE ANGL. DEV. = 18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 124 -126.57 52.88 REMARK 500 ASP A 194 32.14 -93.78 REMARK 500 THR A 245 48.89 -87.47 REMARK 500 PHE A 269 101.34 -160.44 REMARK 500 HIS A 301 -81.76 -13.91 REMARK 500 LEU A 324 92.40 -162.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 403 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 80 SG REMARK 620 2 GLY A 98 O 85.5 REMARK 620 3 HOH A 653 O 151.0 67.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 401 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 284 SG REMARK 620 2 HOH A 666 O 66.7 REMARK 620 3 HOH A 678 O 166.7 102.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CMF RELATED DB: PDB REMARK 900 RELATED ID: 5CMG RELATED DB: PDB REMARK 900 RELATED ID: 5CMH RELATED DB: PDB REMARK 900 RELATED ID: 5CMI RELATED DB: PDB REMARK 900 RELATED ID: 5CQL RELATED DB: PDB REMARK 900 RELATED ID: 5CQM RELATED DB: PDB REMARK 900 RELATED ID: 5CQN RELATED DB: PDB REMARK 900 RELATED ID: 5CQO RELATED DB: PDB REMARK 900 RELATED ID: 5CQP RELATED DB: PDB DBREF 5CMJ A 64 354 UNP P16442 BGAT_HUMAN 64 354 SEQADV 5CMJ PHE A 62 UNP P16442 EXPRESSION TAG SEQADV 5CMJ MET A 63 UNP P16442 EXPRESSION TAG SEQADV 5CMJ GLN A 303 UNP P16442 GLU 303 ENGINEERED MUTATION SEQADV 5CMJ GLU A 355 UNP P16442 EXPRESSION TAG SEQRES 1 A 294 PHE MET VAL SER LEU PRO ARG MET VAL TYR PRO GLN PRO SEQRES 2 A 294 LYS VAL LEU THR PRO CYS ARG LYS ASP VAL LEU VAL VAL SEQRES 3 A 294 THR PRO TRP LEU ALA PRO ILE VAL TRP GLU GLY THR PHE SEQRES 4 A 294 ASN ILE ASP ILE LEU ASN GLU GLN PHE ARG LEU GLN ASN SEQRES 5 A 294 THR THR ILE GLY LEU THR VAL PHE ALA ILE LYS LYS TYR SEQRES 6 A 294 VAL ALA PHE LEU LYS LEU PHE LEU GLU THR ALA GLU LYS SEQRES 7 A 294 HIS PHE MET VAL GLY HIS ARG VAL HIS TYR TYR VAL PHE SEQRES 8 A 294 THR ASP GLN PRO ALA ALA VAL PRO ARG VAL THR LEU GLY SEQRES 9 A 294 THR GLY ARG GLN LEU SER VAL LEU GLU VAL ARG ALA TYR SEQRES 10 A 294 LYS ARG TRP GLN ASP VAL SER MET ARG ARG MET GLU MET SEQRES 11 A 294 ILE SER ASP PHE CYS GLU ARG ARG PHE LEU SER GLU VAL SEQRES 12 A 294 ASP TYR LEU VAL CYS VAL ASP VAL ASP MET GLU PHE ARG SEQRES 13 A 294 ASP HIS VAL GLY VAL GLU ILE LEU THR PRO LEU PHE GLY SEQRES 14 A 294 THR LEU HIS PRO GLY PHE TYR GLY SER SER ARG GLU ALA SEQRES 15 A 294 PHE THR TYR GLU ARG ARG PRO GLN SER GLN ALA TYR ILE SEQRES 16 A 294 PRO LYS ASP GLU GLY ASP PHE TYR TYR LEU GLY GLY PHE SEQRES 17 A 294 PHE GLY GLY SER VAL GLN GLU VAL GLN ARG LEU THR ARG SEQRES 18 A 294 ALA CYS HIS GLN ALA MET MET VAL ASP GLN ALA ASN GLY SEQRES 19 A 294 ILE GLU ALA VAL TRP HIS ASP GLN SER HIS LEU ASN LYS SEQRES 20 A 294 TYR LEU LEU ARG HIS LYS PRO THR LYS VAL LEU SER PRO SEQRES 21 A 294 GLU TYR LEU TRP ASP GLN GLN LEU LEU GLY TRP PRO ALA SEQRES 22 A 294 VAL LEU ARG LYS LEU ARG PHE THR ALA VAL PRO LYS ASN SEQRES 23 A 294 HIS GLN ALA VAL ARG ASN PRO GLU HET HG A 401 1 HET HG A 402 1 HET HG A 403 1 HET HG A 404 1 HET HG A 405 1 HETNAM HG MERCURY (II) ION FORMUL 2 HG 5(HG 2+) FORMUL 7 HOH *178(H2 O) HELIX 1 AA1 ASN A 101 GLN A 112 1 12 HELIX 2 AA2 ILE A 123 ALA A 128 5 6 HELIX 3 AA3 PHE A 129 PHE A 141 1 13 HELIX 4 AA4 GLN A 155 VAL A 159 5 5 HELIX 5 AA5 CYS A 196 VAL A 204 1 9 HELIX 6 AA6 GLY A 221 LEU A 225 5 5 HELIX 7 AA7 SER A 240 PHE A 244 5 5 HELIX 8 AA8 VAL A 274 ASN A 294 1 21 HELIX 9 AA9 TRP A 300 HIS A 313 1 14 HELIX 10 AB1 PRO A 321 LEU A 324 5 4 HELIX 11 AB2 ASP A 326 GLY A 331 1 6 SHEET 1 AA1 8 ILE A 94 VAL A 95 0 SHEET 2 AA1 8 LYS A 317 LEU A 319 1 O VAL A 318 N VAL A 95 SHEET 3 AA1 8 LEU A 228 THR A 231 1 N GLY A 230 O LEU A 319 SHEET 4 AA1 8 PHE A 269 SER A 273 -1 O GLY A 271 N PHE A 229 SHEET 5 AA1 8 TYR A 206 VAL A 210 -1 N CYS A 209 O PHE A 270 SHEET 6 AA1 8 THR A 115 ALA A 122 1 N GLY A 117 O TYR A 206 SHEET 7 AA1 8 ARG A 146 THR A 153 1 O PHE A 152 N ALA A 122 SHEET 8 AA1 8 ARG A 168 GLU A 174 1 O GLN A 169 N TYR A 149 SHEET 1 AA2 2 MET A 214 PHE A 216 0 SHEET 2 AA2 2 PHE A 341 ALA A 343 -1 O THR A 342 N GLU A 215 LINK SG CYS A 80 HG HG A 403 1555 1555 2.37 LINK O GLY A 98 HG HG A 403 1555 1555 2.68 LINK OG1 THR A 119 HG HG A 402 1555 1555 2.88 LINK SG CYS A 196 HG HG A 405 1555 1555 2.61 LINK SG CYS A 284 HG HG A 401 1555 1555 2.41 LINK HG HG A 401 O HOH A 666 1555 1555 3.06 LINK HG HG A 401 O HOH A 678 1555 1555 2.43 LINK HG HG A 403 O HOH A 653 1555 1555 2.83 LINK HG HG A 404 O HOH A 607 1555 1555 2.81 SITE 1 AC1 4 LEU A 280 CYS A 284 HOH A 666 HOH A 678 SITE 1 AC2 2 THR A 119 CYS A 209 SITE 1 AC3 3 CYS A 80 GLY A 98 HOH A 653 SITE 1 AC4 3 CYS A 209 VAL A 210 HOH A 607 SITE 1 AC5 2 CYS A 196 ARG A 198 CRYST1 52.700 148.910 79.590 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018975 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006715 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012564 0.00000