data_5CMX # _entry.id 5CMX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5CMX pdb_00005cmx 10.2210/pdb5cmx/pdb WWPDB D_1000211641 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-01-13 2 'Structure model' 1 1 2016-02-10 3 'Structure model' 1 2 2016-12-21 4 'Structure model' 1 3 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Non-polymer description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5CMX _pdbx_database_status.recvd_initial_deposition_date 2015-07-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'X-ray structures of the same protein, human alpha thrombin, in complex with different DNA aptamers' 3QLP unspecified PDB . 4DII unspecified PDB . 4DIH unspecified PDB . 4I7Y unspecified PDB . 4LZ1 unspecified PDB . 4LZ4 unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Russo Krauss, I.' 1 'Pica, A.' 2 'Napolitano, V.' 3 'Sica, F.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 44 _citation.language ? _citation.page_first 983 _citation.page_last 991 _citation.title 'Different duplex/quadruplex junctions determine the properties of anti-thrombin aptamers with mixed folding.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkv1384 _citation.pdbx_database_id_PubMed 26673709 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Russo Krauss, I.' 1 ? primary 'Spiridonova, V.' 2 ? primary 'Pica, A.' 3 ? primary 'Napolitano, V.' 4 ? primary 'Sica, F.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'alpha thrombin-light chain' 4096.534 1 3.4.21.5 ? ? ? 2 polymer nat 'Thrombin heavy chain' 29780.219 1 3.4.21.5 ? ? ? 3 polymer syn RE31 9727.214 1 ? ? ? ? 4 non-polymer syn 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' 453.986 1 ? ? ? ? 5 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 6 water nat water 18.015 70 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Coagulation factor II' 2 'Coagulation factor II' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L ? 2 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; H ? 3 polydeoxyribonucleotide no no ;(DG)(DT)(DG)(DA)(DC)(DG)(DT)(DA)(DG)(DG)(DT)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DG)(DT) (DT)(DG)(DG)(DG)(DG)(DC)(DG)(DT)(DC)(DA)(DC) ; GTGACGTAGGTTGGTGTGGTTGGGGCGTCAC A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' 0G6 5 'POTASSIUM ION' K 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 PHE n 1 3 GLY n 1 4 SER n 1 5 GLY n 1 6 GLU n 1 7 ALA n 1 8 ASP n 1 9 CYS n 1 10 GLY n 1 11 LEU n 1 12 ARG n 1 13 PRO n 1 14 LEU n 1 15 PHE n 1 16 GLU n 1 17 LYS n 1 18 LYS n 1 19 SER n 1 20 LEU n 1 21 GLU n 1 22 ASP n 1 23 LYS n 1 24 THR n 1 25 GLU n 1 26 ARG n 1 27 GLU n 1 28 LEU n 1 29 LEU n 1 30 GLU n 1 31 SER n 1 32 TYR n 1 33 ILE n 1 34 ASP n 1 35 GLY n 1 36 ARG n 2 1 ILE n 2 2 VAL n 2 3 GLU n 2 4 GLY n 2 5 SER n 2 6 ASP n 2 7 ALA n 2 8 GLU n 2 9 ILE n 2 10 GLY n 2 11 MET n 2 12 SER n 2 13 PRO n 2 14 TRP n 2 15 GLN n 2 16 VAL n 2 17 MET n 2 18 LEU n 2 19 PHE n 2 20 ARG n 2 21 LYS n 2 22 SER n 2 23 PRO n 2 24 GLN n 2 25 GLU n 2 26 LEU n 2 27 LEU n 2 28 CYS n 2 29 GLY n 2 30 ALA n 2 31 SER n 2 32 LEU n 2 33 ILE n 2 34 SER n 2 35 ASP n 2 36 ARG n 2 37 TRP n 2 38 VAL n 2 39 LEU n 2 40 THR n 2 41 ALA n 2 42 ALA n 2 43 HIS n 2 44 CYS n 2 45 LEU n 2 46 LEU n 2 47 TYR n 2 48 PRO n 2 49 PRO n 2 50 TRP n 2 51 ASP n 2 52 LYS n 2 53 ASN n 2 54 PHE n 2 55 THR n 2 56 GLU n 2 57 ASN n 2 58 ASP n 2 59 LEU n 2 60 LEU n 2 61 VAL n 2 62 ARG n 2 63 ILE n 2 64 GLY n 2 65 LYS n 2 66 HIS n 2 67 SER n 2 68 ARG n 2 69 THR n 2 70 ARG n 2 71 TYR n 2 72 GLU n 2 73 ARG n 2 74 ASN n 2 75 ILE n 2 76 GLU n 2 77 LYS n 2 78 ILE n 2 79 SER n 2 80 MET n 2 81 LEU n 2 82 GLU n 2 83 LYS n 2 84 ILE n 2 85 TYR n 2 86 ILE n 2 87 HIS n 2 88 PRO n 2 89 ARG n 2 90 TYR n 2 91 ASN n 2 92 TRP n 2 93 ARG n 2 94 GLU n 2 95 ASN n 2 96 LEU n 2 97 ASP n 2 98 ARG n 2 99 ASP n 2 100 ILE n 2 101 ALA n 2 102 LEU n 2 103 MET n 2 104 LYS n 2 105 LEU n 2 106 LYS n 2 107 LYS n 2 108 PRO n 2 109 VAL n 2 110 ALA n 2 111 PHE n 2 112 SER n 2 113 ASP n 2 114 TYR n 2 115 ILE n 2 116 HIS n 2 117 PRO n 2 118 VAL n 2 119 CYS n 2 120 LEU n 2 121 PRO n 2 122 ASP n 2 123 ARG n 2 124 GLU n 2 125 THR n 2 126 ALA n 2 127 ALA n 2 128 SER n 2 129 LEU n 2 130 LEU n 2 131 GLN n 2 132 ALA n 2 133 GLY n 2 134 TYR n 2 135 LYS n 2 136 GLY n 2 137 ARG n 2 138 VAL n 2 139 THR n 2 140 GLY n 2 141 TRP n 2 142 GLY n 2 143 ASN n 2 144 LEU n 2 145 LYS n 2 146 GLU n 2 147 THR n 2 148 TRP n 2 149 THR n 2 150 ALA n 2 151 ASN n 2 152 VAL n 2 153 GLY n 2 154 LYS n 2 155 GLY n 2 156 GLN n 2 157 PRO n 2 158 SER n 2 159 VAL n 2 160 LEU n 2 161 GLN n 2 162 VAL n 2 163 VAL n 2 164 ASN n 2 165 LEU n 2 166 PRO n 2 167 ILE n 2 168 VAL n 2 169 GLU n 2 170 ARG n 2 171 PRO n 2 172 VAL n 2 173 CYS n 2 174 LYS n 2 175 ASP n 2 176 SER n 2 177 THR n 2 178 ARG n 2 179 ILE n 2 180 ARG n 2 181 ILE n 2 182 THR n 2 183 ASP n 2 184 ASN n 2 185 MET n 2 186 PHE n 2 187 CYS n 2 188 ALA n 2 189 GLY n 2 190 TYR n 2 191 LYS n 2 192 PRO n 2 193 ASP n 2 194 GLU n 2 195 GLY n 2 196 LYS n 2 197 ARG n 2 198 GLY n 2 199 ASP n 2 200 ALA n 2 201 CYS n 2 202 GLU n 2 203 GLY n 2 204 ASP n 2 205 SER n 2 206 GLY n 2 207 GLY n 2 208 PRO n 2 209 PHE n 2 210 VAL n 2 211 MET n 2 212 LYS n 2 213 SER n 2 214 PRO n 2 215 PHE n 2 216 ASN n 2 217 ASN n 2 218 ARG n 2 219 TRP n 2 220 TYR n 2 221 GLN n 2 222 MET n 2 223 GLY n 2 224 ILE n 2 225 VAL n 2 226 SER n 2 227 TRP n 2 228 GLY n 2 229 GLU n 2 230 GLY n 2 231 CYS n 2 232 ASP n 2 233 ARG n 2 234 ASP n 2 235 GLY n 2 236 LYS n 2 237 TYR n 2 238 GLY n 2 239 PHE n 2 240 TYR n 2 241 THR n 2 242 HIS n 2 243 VAL n 2 244 PHE n 2 245 ARG n 2 246 LEU n 2 247 LYS n 2 248 LYS n 2 249 TRP n 2 250 ILE n 2 251 GLN n 2 252 LYS n 2 253 VAL n 2 254 ILE n 2 255 ASP n 2 256 GLN n 2 257 PHE n 2 258 GLY n 2 259 GLU n 3 1 DG n 3 2 DT n 3 3 DG n 3 4 DA n 3 5 DC n 3 6 DG n 3 7 DT n 3 8 DA n 3 9 DG n 3 10 DG n 3 11 DT n 3 12 DT n 3 13 DG n 3 14 DG n 3 15 DT n 3 16 DG n 3 17 DT n 3 18 DG n 3 19 DG n 3 20 DT n 3 21 DT n 3 22 DG n 3 23 DG n 3 24 DG n 3 25 DG n 3 26 DC n 3 27 DG n 3 28 DT n 3 29 DC n 3 30 DA n 3 31 DC n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample 1 36 Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 1 259 Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 31 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0G6 peptide-like . 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' PPACK 'C21 H34 Cl N6 O3 1' 453.986 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 -4 ? ? ? L . n A 1 2 PHE 2 -3 ? ? ? L . n A 1 3 GLY 3 -2 ? ? ? L . n A 1 4 SER 4 -1 ? ? ? L . n A 1 5 GLY 5 0 ? ? ? L . n A 1 6 GLU 6 1 1 GLU GLU L C n A 1 7 ALA 7 1 1 ALA ALA L B n A 1 8 ASP 8 1 1 ASP ASP L A n A 1 9 CYS 9 1 1 CYS CYS L . n A 1 10 GLY 10 2 2 GLY GLY L . n A 1 11 LEU 11 3 3 LEU LEU L . n A 1 12 ARG 12 4 4 ARG ARG L . n A 1 13 PRO 13 5 5 PRO PRO L . n A 1 14 LEU 14 6 6 LEU LEU L . n A 1 15 PHE 15 7 7 PHE PHE L . n A 1 16 GLU 16 8 8 GLU GLU L . n A 1 17 LYS 17 9 9 LYS LYS L . n A 1 18 LYS 18 10 10 LYS LYS L . n A 1 19 SER 19 11 11 SER SER L . n A 1 20 LEU 20 12 12 LEU LEU L . n A 1 21 GLU 21 13 13 GLU GLU L . n A 1 22 ASP 22 14 14 ASP ASP L . n A 1 23 LYS 23 14 14 LYS LYS L A n A 1 24 THR 24 14 14 THR THR L B n A 1 25 GLU 25 14 14 GLU GLU L C n A 1 26 ARG 26 14 14 ARG ARG L D n A 1 27 GLU 27 14 14 GLU GLU L E n A 1 28 LEU 28 14 14 LEU LEU L F n A 1 29 LEU 29 14 14 LEU LEU L G n A 1 30 GLU 30 14 14 GLU GLU L H n A 1 31 SER 31 14 14 SER SER L I n A 1 32 TYR 32 14 14 TYR TYR L J n A 1 33 ILE 33 14 14 ILE ILE L K n A 1 34 ASP 34 15 ? ? ? L . n A 1 35 GLY 35 16 ? ? ? L . n A 1 36 ARG 36 17 ? ? ? L . n B 2 1 ILE 1 16 16 ILE ILE H . n B 2 2 VAL 2 17 17 VAL VAL H . n B 2 3 GLU 3 18 18 GLU GLU H . n B 2 4 GLY 4 19 19 GLY GLY H . n B 2 5 SER 5 20 20 SER SER H . n B 2 6 ASP 6 21 21 ASP ASP H . n B 2 7 ALA 7 22 22 ALA ALA H . n B 2 8 GLU 8 23 23 GLU GLU H . n B 2 9 ILE 9 24 24 ILE ILE H . n B 2 10 GLY 10 25 25 GLY GLY H . n B 2 11 MET 11 26 26 MET MET H . n B 2 12 SER 12 27 27 SER SER H . n B 2 13 PRO 13 28 28 PRO PRO H . n B 2 14 TRP 14 29 29 TRP TRP H . n B 2 15 GLN 15 30 30 GLN GLN H . n B 2 16 VAL 16 31 31 VAL VAL H . n B 2 17 MET 17 32 32 MET MET H . n B 2 18 LEU 18 33 33 LEU LEU H . n B 2 19 PHE 19 34 34 PHE PHE H . n B 2 20 ARG 20 35 35 ARG ARG H . n B 2 21 LYS 21 36 36 LYS LYS H . n B 2 22 SER 22 36 36 SER SER H A n B 2 23 PRO 23 37 37 PRO PRO H . n B 2 24 GLN 24 38 38 GLN GLN H . n B 2 25 GLU 25 39 39 GLU GLU H . n B 2 26 LEU 26 40 40 LEU LEU H . n B 2 27 LEU 27 41 41 LEU LEU H . n B 2 28 CYS 28 42 42 CYS CYS H . n B 2 29 GLY 29 43 43 GLY GLY H . n B 2 30 ALA 30 44 44 ALA ALA H . n B 2 31 SER 31 45 45 SER SER H . n B 2 32 LEU 32 46 46 LEU LEU H . n B 2 33 ILE 33 47 47 ILE ILE H . n B 2 34 SER 34 48 48 SER SER H . n B 2 35 ASP 35 49 49 ASP ASP H . n B 2 36 ARG 36 50 50 ARG ARG H . n B 2 37 TRP 37 51 51 TRP TRP H . n B 2 38 VAL 38 52 52 VAL VAL H . n B 2 39 LEU 39 53 53 LEU LEU H . n B 2 40 THR 40 54 54 THR THR H . n B 2 41 ALA 41 55 55 ALA ALA H . n B 2 42 ALA 42 56 56 ALA ALA H . n B 2 43 HIS 43 57 57 HIS HIS H . n B 2 44 CYS 44 58 58 CYS CYS H . n B 2 45 LEU 45 59 59 LEU LEU H . n B 2 46 LEU 46 60 60 LEU LEU H . n B 2 47 TYR 47 60 60 TYR TYR H A n B 2 48 PRO 48 60 60 PRO PRO H B n B 2 49 PRO 49 60 60 PRO PRO H C n B 2 50 TRP 50 60 60 TRP TRP H D n B 2 51 ASP 51 60 60 ASP ASP H E n B 2 52 LYS 52 60 60 LYS LYS H F n B 2 53 ASN 53 60 60 ASN ASN H G n B 2 54 PHE 54 60 60 PHE PHE H H n B 2 55 THR 55 60 60 THR THR H I n B 2 56 GLU 56 61 61 GLU GLU H . n B 2 57 ASN 57 62 62 ASN ASN H . n B 2 58 ASP 58 63 63 ASP ASP H . n B 2 59 LEU 59 64 64 LEU LEU H . n B 2 60 LEU 60 65 65 LEU LEU H . n B 2 61 VAL 61 66 66 VAL VAL H . n B 2 62 ARG 62 67 67 ARG ARG H . n B 2 63 ILE 63 68 68 ILE ILE H . n B 2 64 GLY 64 69 69 GLY GLY H . n B 2 65 LYS 65 70 70 LYS LYS H . n B 2 66 HIS 66 71 71 HIS HIS H . n B 2 67 SER 67 72 72 SER SER H . n B 2 68 ARG 68 73 73 ARG ARG H . n B 2 69 THR 69 74 74 THR THR H . n B 2 70 ARG 70 75 75 ARG ARG H . n B 2 71 TYR 71 76 76 TYR TYR H . n B 2 72 GLU 72 77 77 GLU GLU H . n B 2 73 ARG 73 77 77 ARG ARG H A n B 2 74 ASN 74 78 78 ASN ASN H . n B 2 75 ILE 75 79 79 ILE ILE H . n B 2 76 GLU 76 80 80 GLU GLU H . n B 2 77 LYS 77 81 81 LYS LYS H . n B 2 78 ILE 78 82 82 ILE ILE H . n B 2 79 SER 79 83 83 SER SER H . n B 2 80 MET 80 84 84 MET MET H . n B 2 81 LEU 81 85 85 LEU LEU H . n B 2 82 GLU 82 86 86 GLU GLU H . n B 2 83 LYS 83 87 87 LYS LYS H . n B 2 84 ILE 84 88 88 ILE ILE H . n B 2 85 TYR 85 89 89 TYR TYR H . n B 2 86 ILE 86 90 90 ILE ILE H . n B 2 87 HIS 87 91 91 HIS HIS H . n B 2 88 PRO 88 92 92 PRO PRO H . n B 2 89 ARG 89 93 93 ARG ARG H . n B 2 90 TYR 90 94 94 TYR TYR H . n B 2 91 ASN 91 95 95 ASN ASN H . n B 2 92 TRP 92 96 96 TRP TRP H . n B 2 93 ARG 93 97 97 ARG ARG H . n B 2 94 GLU 94 97 97 GLU GLU H A n B 2 95 ASN 95 98 98 ASN ASN H . n B 2 96 LEU 96 99 99 LEU LEU H . n B 2 97 ASP 97 100 100 ASP ASP H . n B 2 98 ARG 98 101 101 ARG ARG H . n B 2 99 ASP 99 102 102 ASP ASP H . n B 2 100 ILE 100 103 103 ILE ILE H . n B 2 101 ALA 101 104 104 ALA ALA H . n B 2 102 LEU 102 105 105 LEU LEU H . n B 2 103 MET 103 106 106 MET MET H . n B 2 104 LYS 104 107 107 LYS LYS H . n B 2 105 LEU 105 108 108 LEU LEU H . n B 2 106 LYS 106 109 109 LYS LYS H . n B 2 107 LYS 107 110 110 LYS LYS H . n B 2 108 PRO 108 111 111 PRO PRO H . n B 2 109 VAL 109 112 112 VAL VAL H . n B 2 110 ALA 110 113 113 ALA ALA H . n B 2 111 PHE 111 114 114 PHE PHE H . n B 2 112 SER 112 115 115 SER SER H . n B 2 113 ASP 113 116 116 ASP ASP H . n B 2 114 TYR 114 117 117 TYR TYR H . n B 2 115 ILE 115 118 118 ILE ILE H . n B 2 116 HIS 116 119 119 HIS HIS H . n B 2 117 PRO 117 120 120 PRO PRO H . n B 2 118 VAL 118 121 121 VAL VAL H . n B 2 119 CYS 119 122 122 CYS CYS H . n B 2 120 LEU 120 123 123 LEU LEU H . n B 2 121 PRO 121 124 124 PRO PRO H . n B 2 122 ASP 122 125 125 ASP ASP H . n B 2 123 ARG 123 126 126 ARG ARG H . n B 2 124 GLU 124 127 127 GLU GLU H . n B 2 125 THR 125 128 128 THR THR H . n B 2 126 ALA 126 129 129 ALA ALA H . n B 2 127 ALA 127 129 129 ALA ALA H A n B 2 128 SER 128 129 129 SER SER H B n B 2 129 LEU 129 129 129 LEU LEU H C n B 2 130 LEU 130 130 130 LEU LEU H . n B 2 131 GLN 131 131 131 GLN GLN H . n B 2 132 ALA 132 132 132 ALA ALA H . n B 2 133 GLY 133 133 133 GLY GLY H . n B 2 134 TYR 134 134 134 TYR TYR H . n B 2 135 LYS 135 135 135 LYS LYS H . n B 2 136 GLY 136 136 136 GLY GLY H . n B 2 137 ARG 137 137 137 ARG ARG H . n B 2 138 VAL 138 138 138 VAL VAL H . n B 2 139 THR 139 139 139 THR THR H . n B 2 140 GLY 140 140 140 GLY GLY H . n B 2 141 TRP 141 141 141 TRP TRP H . n B 2 142 GLY 142 142 142 GLY GLY H . n B 2 143 ASN 143 143 143 ASN ASN H . n B 2 144 LEU 144 144 144 LEU LEU H . n B 2 145 LYS 145 145 145 LYS LYS H . n B 2 146 GLU 146 146 146 GLU GLU H . n B 2 147 THR 147 147 147 THR THR H . n B 2 148 TRP 148 147 ? ? ? H A n B 2 149 THR 149 147 ? ? ? H B n B 2 150 ALA 150 147 ? ? ? H C n B 2 151 ASN 151 147 ? ? ? H D n B 2 152 VAL 152 147 ? ? ? H E n B 2 153 GLY 153 147 ? ? ? H F n B 2 154 LYS 154 147 ? ? ? H G n B 2 155 GLY 155 150 150 GLY GLY H . n B 2 156 GLN 156 151 151 GLN GLN H . n B 2 157 PRO 157 152 152 PRO PRO H . n B 2 158 SER 158 153 153 SER SER H . n B 2 159 VAL 159 154 154 VAL VAL H . n B 2 160 LEU 160 155 155 LEU LEU H . n B 2 161 GLN 161 156 156 GLN GLN H . n B 2 162 VAL 162 157 157 VAL VAL H . n B 2 163 VAL 163 158 158 VAL VAL H . n B 2 164 ASN 164 159 159 ASN ASN H . n B 2 165 LEU 165 160 160 LEU LEU H . n B 2 166 PRO 166 161 161 PRO PRO H . n B 2 167 ILE 167 162 162 ILE ILE H . n B 2 168 VAL 168 163 163 VAL VAL H . n B 2 169 GLU 169 164 164 GLU GLU H . n B 2 170 ARG 170 165 165 ARG ARG H . n B 2 171 PRO 171 166 166 PRO PRO H . n B 2 172 VAL 172 167 167 VAL VAL H . n B 2 173 CYS 173 168 168 CYS CYS H . n B 2 174 LYS 174 169 169 LYS LYS H . n B 2 175 ASP 175 170 170 ASP ASP H . n B 2 176 SER 176 171 171 SER SER H . n B 2 177 THR 177 172 172 THR THR H . n B 2 178 ARG 178 173 173 ARG ARG H . n B 2 179 ILE 179 174 174 ILE ILE H . n B 2 180 ARG 180 175 175 ARG ARG H . n B 2 181 ILE 181 176 176 ILE ILE H . n B 2 182 THR 182 177 177 THR THR H . n B 2 183 ASP 183 178 178 ASP ASP H . n B 2 184 ASN 184 179 179 ASN ASN H . n B 2 185 MET 185 180 180 MET MET H . n B 2 186 PHE 186 181 181 PHE PHE H . n B 2 187 CYS 187 182 182 CYS CYS H . n B 2 188 ALA 188 183 183 ALA ALA H . n B 2 189 GLY 189 184 184 GLY GLY H . n B 2 190 TYR 190 184 184 TYR TYR H A n B 2 191 LYS 191 185 185 LYS LYS H . n B 2 192 PRO 192 186 186 PRO PRO H . n B 2 193 ASP 193 186 186 ASP ASP H A n B 2 194 GLU 194 186 186 GLU GLU H B n B 2 195 GLY 195 186 186 GLY GLY H C n B 2 196 LYS 196 186 186 LYS LYS H D n B 2 197 ARG 197 187 187 ARG ARG H . n B 2 198 GLY 198 188 188 GLY GLY H . n B 2 199 ASP 199 189 189 ASP ASP H . n B 2 200 ALA 200 190 190 ALA ALA H . n B 2 201 CYS 201 191 191 CYS CYS H . n B 2 202 GLU 202 192 192 GLU GLU H . n B 2 203 GLY 203 193 193 GLY GLY H . n B 2 204 ASP 204 194 194 ASP ASP H . n B 2 205 SER 205 195 195 SER SER H . n B 2 206 GLY 206 196 196 GLY GLY H . n B 2 207 GLY 207 197 197 GLY GLY H . n B 2 208 PRO 208 198 198 PRO PRO H . n B 2 209 PHE 209 199 199 PHE PHE H . n B 2 210 VAL 210 200 200 VAL VAL H . n B 2 211 MET 211 201 201 MET MET H . n B 2 212 LYS 212 202 202 LYS LYS H . n B 2 213 SER 213 203 203 SER SER H . n B 2 214 PRO 214 204 204 PRO PRO H . n B 2 215 PHE 215 204 204 PHE PHE H A n B 2 216 ASN 216 204 204 ASN ASN H B n B 2 217 ASN 217 205 205 ASN ASN H . n B 2 218 ARG 218 206 206 ARG ARG H . n B 2 219 TRP 219 207 207 TRP TRP H . n B 2 220 TYR 220 208 208 TYR TYR H . n B 2 221 GLN 221 209 209 GLN GLN H . n B 2 222 MET 222 210 210 MET MET H . n B 2 223 GLY 223 211 211 GLY GLY H . n B 2 224 ILE 224 212 212 ILE ILE H . n B 2 225 VAL 225 213 213 VAL VAL H . n B 2 226 SER 226 214 214 SER SER H . n B 2 227 TRP 227 215 215 TRP TRP H . n B 2 228 GLY 228 216 216 GLY GLY H . n B 2 229 GLU 229 217 217 GLU GLU H . n B 2 230 GLY 230 219 219 GLY GLY H . n B 2 231 CYS 231 220 220 CYS CYS H . n B 2 232 ASP 232 221 221 ASP ASP H A n B 2 233 ARG 233 221 221 ARG ARG H . n B 2 234 ASP 234 222 222 ASP ASP H . n B 2 235 GLY 235 223 223 GLY GLY H . n B 2 236 LYS 236 224 224 LYS LYS H . n B 2 237 TYR 237 225 225 TYR TYR H . n B 2 238 GLY 238 226 226 GLY GLY H . n B 2 239 PHE 239 227 227 PHE PHE H . n B 2 240 TYR 240 228 228 TYR TYR H . n B 2 241 THR 241 229 229 THR THR H . n B 2 242 HIS 242 230 230 HIS HIS H . n B 2 243 VAL 243 231 231 VAL VAL H . n B 2 244 PHE 244 232 232 PHE PHE H . n B 2 245 ARG 245 233 233 ARG ARG H . n B 2 246 LEU 246 234 234 LEU LEU H . n B 2 247 LYS 247 235 235 LYS LYS H . n B 2 248 LYS 248 236 236 LYS LYS H . n B 2 249 TRP 249 237 237 TRP TRP H . n B 2 250 ILE 250 238 238 ILE ILE H . n B 2 251 GLN 251 239 239 GLN GLN H . n B 2 252 LYS 252 240 240 LYS LYS H . n B 2 253 VAL 253 241 241 VAL VAL H . n B 2 254 ILE 254 242 242 ILE ILE H . n B 2 255 ASP 255 243 243 ASP ASP H . n B 2 256 GLN 256 244 244 GLN GLN H . n B 2 257 PHE 257 245 ? ? ? H . n B 2 258 GLY 258 246 ? ? ? H . n B 2 259 GLU 259 247 ? ? ? H . n C 3 1 DG 1 1 ? ? ? A . n C 3 2 DT 2 2 2 DT DT A . n C 3 3 DG 3 3 3 DG DG A . n C 3 4 DA 4 4 4 DA DA A . n C 3 5 DC 5 5 5 DC DC A . n C 3 6 DG 6 6 6 DG DG A . n C 3 7 DT 7 7 7 DT DT A . n C 3 8 DA 8 8 8 DA DA A . n C 3 9 DG 9 9 9 DG DG A . n C 3 10 DG 10 10 10 DG DG A . n C 3 11 DT 11 11 11 DT DT A . n C 3 12 DT 12 12 12 DT DT A . n C 3 13 DG 13 13 13 DG DG A . n C 3 14 DG 14 14 14 DG DG A . n C 3 15 DT 15 15 15 DT DT A . n C 3 16 DG 16 16 16 DG DG A . n C 3 17 DT 17 17 17 DT DT A . n C 3 18 DG 18 18 18 DG DG A . n C 3 19 DG 19 19 19 DG DG A . n C 3 20 DT 20 20 20 DT DT A . n C 3 21 DT 21 21 21 DT DT A . n C 3 22 DG 22 22 22 DG DG A . n C 3 23 DG 23 23 23 DG DG A . n C 3 24 DG 24 24 24 DG DG A . n C 3 25 DG 25 25 25 DG DG A . n C 3 26 DC 26 26 26 DC DC A . n C 3 27 DG 27 27 27 DG DG A . n C 3 28 DT 28 28 28 DT DT A . n C 3 29 DC 29 29 29 DC DC A . n C 3 30 DA 30 30 30 DA DA A . n C 3 31 DC 31 31 31 DC DC A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 0G6 1 401 401 0G6 0G6 H . E 5 K 1 101 101 K K A . F 6 HOH 1 101 101 HOH HOH L . G 6 HOH 1 501 501 HOH HOH H . G 6 HOH 2 502 502 HOH HOH H . G 6 HOH 3 503 503 HOH HOH H . G 6 HOH 4 504 504 HOH HOH H . G 6 HOH 5 505 505 HOH HOH H . G 6 HOH 6 506 506 HOH HOH H . G 6 HOH 7 507 507 HOH HOH H . G 6 HOH 8 508 508 HOH HOH H . G 6 HOH 9 509 509 HOH HOH H . G 6 HOH 10 510 510 HOH HOH H . G 6 HOH 11 511 511 HOH HOH H . G 6 HOH 12 512 512 HOH HOH H . G 6 HOH 13 513 513 HOH HOH H . G 6 HOH 14 514 514 HOH HOH H . G 6 HOH 15 515 515 HOH HOH H . G 6 HOH 16 516 516 HOH HOH H . G 6 HOH 17 517 517 HOH HOH H . G 6 HOH 18 518 518 HOH HOH H . G 6 HOH 19 519 519 HOH HOH H . G 6 HOH 20 520 520 HOH HOH H . G 6 HOH 21 521 521 HOH HOH H . G 6 HOH 22 522 522 HOH HOH H . G 6 HOH 23 523 523 HOH HOH H . G 6 HOH 24 524 524 HOH HOH H . G 6 HOH 25 525 525 HOH HOH H . G 6 HOH 26 526 526 HOH HOH H . G 6 HOH 27 527 527 HOH HOH H . G 6 HOH 28 528 528 HOH HOH H . G 6 HOH 29 529 529 HOH HOH H . G 6 HOH 30 530 530 HOH HOH H . G 6 HOH 31 531 531 HOH HOH H . G 6 HOH 32 532 532 HOH HOH H . G 6 HOH 33 533 533 HOH HOH H . G 6 HOH 34 534 534 HOH HOH H . G 6 HOH 35 535 535 HOH HOH H . G 6 HOH 36 536 536 HOH HOH H . G 6 HOH 37 537 537 HOH HOH H . G 6 HOH 38 538 538 HOH HOH H . G 6 HOH 39 539 539 HOH HOH H . G 6 HOH 40 540 540 HOH HOH H . G 6 HOH 41 541 541 HOH HOH H . G 6 HOH 42 542 542 HOH HOH H . G 6 HOH 43 543 543 HOH HOH H . G 6 HOH 44 544 544 HOH HOH H . G 6 HOH 45 545 545 HOH HOH H . G 6 HOH 46 546 546 HOH HOH H . G 6 HOH 47 547 547 HOH HOH H . G 6 HOH 48 548 548 HOH HOH H . H 6 HOH 1 201 201 HOH HOH A . H 6 HOH 2 202 202 HOH HOH A . H 6 HOH 3 203 203 HOH HOH A . H 6 HOH 4 204 204 HOH HOH A . H 6 HOH 5 205 205 HOH HOH A . H 6 HOH 6 206 206 HOH HOH A . H 6 HOH 7 207 207 HOH HOH A . H 6 HOH 8 208 208 HOH HOH A . H 6 HOH 9 209 209 HOH HOH A . H 6 HOH 10 210 210 HOH HOH A . H 6 HOH 11 211 211 HOH HOH A . H 6 HOH 12 212 212 HOH HOH A . H 6 HOH 13 213 213 HOH HOH A . H 6 HOH 14 214 214 HOH HOH A . H 6 HOH 15 215 215 HOH HOH A . H 6 HOH 16 216 216 HOH HOH A . H 6 HOH 17 217 217 HOH HOH A . H 6 HOH 18 218 218 HOH HOH A . H 6 HOH 19 219 219 HOH HOH A . H 6 HOH 20 220 220 HOH HOH A . H 6 HOH 21 221 221 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DC 31 ? "C5'" ? C DC 31 "C5'" 2 1 Y 1 A DC 31 ? "C4'" ? C DC 31 "C4'" 3 1 Y 1 A DC 31 ? "O4'" ? C DC 31 "O4'" 4 1 Y 1 A DC 31 ? "C3'" ? C DC 31 "C3'" 5 1 Y 1 A DC 31 ? "O3'" ? C DC 31 "O3'" 6 1 Y 1 A DC 31 ? "C2'" ? C DC 31 "C2'" 7 1 Y 1 A DC 31 ? "C1'" ? C DC 31 "C1'" 8 1 Y 1 A DC 31 ? N1 ? C DC 31 N1 9 1 Y 1 A DC 31 ? C2 ? C DC 31 C2 10 1 Y 1 A DC 31 ? O2 ? C DC 31 O2 11 1 Y 1 A DC 31 ? N3 ? C DC 31 N3 12 1 Y 1 A DC 31 ? C4 ? C DC 31 C4 13 1 Y 1 A DC 31 ? N4 ? C DC 31 N4 14 1 Y 1 A DC 31 ? C5 ? C DC 31 C5 15 1 Y 1 A DC 31 ? C6 ? C DC 31 C6 16 1 N 1 H 0G6 401 ? CL ? D 0G6 1 CL # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0103 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? MOSFLM ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.entry_id 5CMX _cell.length_a 77.319 _cell.length_b 124.420 _cell.length_c 40.440 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CMX _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5CMX _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.23 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M sodium malonate pH 7, 18 % PEG 3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN 944' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-07-23 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5CMX _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 70.000 _reflns.d_resolution_high 2.980 _reflns.number_obs 7828 _reflns.number_all ? _reflns.percent_possible_obs 90.1 _reflns.pdbx_Rmerge_I_obs .134 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.3000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.200 # _reflns_shell.d_res_high 2.98 _reflns_shell.d_res_low 3.11 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 85.5 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs .558 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5CMX _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7406 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 65.67 _refine.ls_d_res_high 2.98 _refine.ls_percent_reflns_obs 92.6 _refine.ls_R_factor_obs 0.169 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.166 _refine.ls_R_factor_R_free 0.231 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.300 _refine.ls_number_reflns_R_free 411 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.900 _refine.B_iso_mean 54.54 _refine.aniso_B[1][1] 0.84000 _refine.aniso_B[2][2] -0.80000 _refine.aniso_B[3][3] -0.04000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS ; _refine.pdbx_starting_model 4DII _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.455 _refine.overall_SU_ML 0.337 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 18.704 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2245 _refine_hist.pdbx_number_atoms_nucleic_acid 612 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 70 _refine_hist.number_atoms_total 2958 _refine_hist.d_res_high 2.98 _refine_hist.d_res_low 65.67 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.017 ? 3018 'X-RAY DIFFRACTION' ? r_bond_other_d 0.007 0.020 ? 2555 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.719 1.771 ? 4208 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.200 3.000 ? 5913 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.469 5.000 ? 273 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.004 23.303 ? 109 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.414 15.000 ? 416 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.333 15.000 ? 20 'X-RAY DIFFRACTION' ? r_chiral_restr 0.101 0.200 ? 415 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.021 ? 2938 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 686 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.452 5.363 ? 1107 'X-RAY DIFFRACTION' ? r_mcbond_other 2.451 5.362 ? 1108 'X-RAY DIFFRACTION' ? r_mcangle_it 4.005 8.028 ? 1375 'X-RAY DIFFRACTION' ? r_mcangle_other 4.003 8.028 ? 1376 'X-RAY DIFFRACTION' ? r_scbond_it 2.838 5.614 ? 1911 'X-RAY DIFFRACTION' ? r_scbond_other 2.822 5.604 ? 1909 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 4.598 8.331 ? 2831 'X-RAY DIFFRACTION' ? r_long_range_B_refined 7.125 46.032 ? 3849 'X-RAY DIFFRACTION' ? r_long_range_B_other 7.089 46.065 ? 3839 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.98 _refine_ls_shell.d_res_low 3.06 _refine_ls_shell.number_reflns_R_work 417 _refine_ls_shell.R_factor_R_work 0.2660 _refine_ls_shell.percent_reflns_obs 73.42 _refine_ls_shell.R_factor_R_free 0.3490 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 25 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 5CMX _struct.title 'X-ray structure of the complex between human alpha thrombin and a duplex/quadruplex 31-mer DNA aptamer' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5CMX _struct_keywords.text 'DNA aptamer, duplex/G-quadruplex fold, thrombin, exosite I, hydrolase' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP THRB_HUMAN P00734 ? 1 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR 328 2 UNP THRB_HUMAN P00734 ? 2 ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; 364 3 PDB 5CMX 5CMX ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5CMX L 1 ? 36 ? P00734 328 ? 363 ? -4 17 2 2 5CMX H 1 ? 259 ? P00734 364 ? 622 ? 16 247 3 3 5CMX A 1 ? 31 ? 5CMX 1 ? 31 ? 1 31 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3250 ? 1 MORE -16 ? 1 'SSA (A^2)' 16930 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 24 B SER A 31 I THR L 14 SER L 14 1 ? 8 HELX_P HELX_P2 AA2 ALA B 41 ? CYS B 44 ? ALA H 55 CYS H 58 5 ? 4 HELX_P HELX_P3 AA3 PRO B 48 B ASP B 51 E PRO H 60 ASP H 60 5 ? 4 HELX_P HELX_P4 AA4 THR B 55 I ASN B 57 ? THR H 60 ASN H 62 5 ? 3 HELX_P HELX_P5 AA5 ASP B 122 ? LEU B 130 ? ASP H 125 LEU H 130 1 ? 9 HELX_P HELX_P6 AA6 GLU B 169 ? SER B 176 ? GLU H 164 SER H 171 1 ? 8 HELX_P HELX_P7 AA7 VAL B 243 ? GLN B 256 ? VAL H 231 GLN H 244 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 B CYS 119 SG ? ? L CYS 1 H CYS 122 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf2 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 44 SG ? ? H CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf3 disulf ? ? B CYS 173 SG ? ? ? 1_555 B CYS 187 SG ? ? H CYS 168 H CYS 182 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf4 disulf ? ? B CYS 201 SG ? ? ? 1_555 B CYS 231 SG ? ? H CYS 191 H CYS 220 1_555 ? ? ? ? ? ? ? 2.034 ? ? metalc1 metalc ? ? C DG 9 O6 ? ? ? 1_555 E K . K ? ? A DG 9 A K 101 1_555 ? ? ? ? ? ? ? 2.628 ? ? metalc2 metalc ? ? C DG 10 O6 ? ? ? 1_555 E K . K ? ? A DG 10 A K 101 1_555 ? ? ? ? ? ? ? 2.752 ? ? metalc3 metalc ? ? C DG 13 O6 ? ? ? 1_555 E K . K ? ? A DG 13 A K 101 1_555 ? ? ? ? ? ? ? 2.632 ? ? metalc4 metalc ? ? C DG 14 O6 ? ? ? 1_555 E K . K ? ? A DG 14 A K 101 1_555 ? ? ? ? ? ? ? 2.614 ? ? metalc5 metalc ? ? C DG 18 O6 ? ? ? 1_555 E K . K ? ? A DG 18 A K 101 1_555 ? ? ? ? ? ? ? 2.449 ? ? metalc6 metalc ? ? C DG 19 O6 ? ? ? 1_555 E K . K ? ? A DG 19 A K 101 1_555 ? ? ? ? ? ? ? 2.967 ? ? metalc7 metalc ? ? C DG 22 O6 ? ? ? 1_555 E K . K ? ? A DG 22 A K 101 1_555 ? ? ? ? ? ? ? 2.654 ? ? metalc8 metalc ? ? C DG 23 O6 ? ? ? 1_555 E K . K ? ? A DG 23 A K 101 1_555 ? ? ? ? ? ? ? 2.791 ? ? hydrog1 hydrog ? ? C DT 2 N3 ? ? ? 1_555 C DA 30 N1 ? ? A DT 2 A DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DT 2 O4 ? ? ? 1_555 C DA 30 N6 ? ? A DT 2 A DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DG 3 N1 ? ? ? 1_555 C DC 29 O2 ? ? A DG 3 A DC 29 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog4 hydrog ? ? C DG 3 N2 ? ? ? 1_555 C DC 29 N3 ? ? A DG 3 A DC 29 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog5 hydrog ? ? C DA 4 N1 ? ? ? 1_555 C DT 28 N3 ? ? A DA 4 A DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DA 4 N6 ? ? ? 1_555 C DT 28 O4 ? ? A DA 4 A DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DC 5 N3 ? ? ? 1_555 C DG 27 N1 ? ? A DC 5 A DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DC 5 N4 ? ? ? 1_555 C DG 27 O6 ? ? A DC 5 A DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DC 5 O2 ? ? ? 1_555 C DG 27 N2 ? ? A DC 5 A DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DG 6 N1 ? ? ? 1_555 C DC 26 N3 ? ? A DG 6 A DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DG 6 N2 ? ? ? 1_555 C DC 26 O2 ? ? A DG 6 A DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DG 6 O6 ? ? ? 1_555 C DC 26 N4 ? ? A DG 6 A DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DT 7 O2 ? ? ? 1_555 C DG 25 N1 ? ? A DT 7 A DG 25 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog14 hydrog ? ? C DA 8 N6 ? ? ? 1_555 C DT 17 O2 ? ? A DA 8 A DT 17 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog15 hydrog ? ? C DA 8 N7 ? ? ? 1_555 C DT 17 N3 ? ? A DA 8 A DT 17 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog16 hydrog ? ? C DG 9 N1 ? ? ? 1_555 C DG 14 O6 ? ? A DG 9 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? C DG 9 N2 ? ? ? 1_555 C DG 14 N7 ? ? A DG 9 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? C DG 9 N7 ? ? ? 1_555 C DG 23 N2 ? ? A DG 9 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? C DG 9 O6 ? ? ? 1_555 C DG 23 N1 ? ? A DG 9 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? C DG 10 N7 ? ? ? 1_555 C DG 13 N2 ? ? A DG 10 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? C DG 10 O6 ? ? ? 1_555 C DG 13 N1 ? ? A DG 10 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? C DG 10 N1 ? ? ? 1_555 C DG 22 O6 ? ? A DG 10 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? C DG 10 N2 ? ? ? 1_555 C DG 22 N7 ? ? A DG 10 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? C DG 13 N7 ? ? ? 1_555 C DG 19 N2 ? ? A DG 13 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? C DG 13 O6 ? ? ? 1_555 C DG 19 N1 ? ? A DG 13 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? C DG 14 N2 ? ? ? 1_555 C DG 18 N7 ? ? A DG 14 A DG 18 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog27 hydrog ? ? C DG 16 N2 ? ? ? 1_555 C DG 18 O6 ? ? A DG 16 A DG 18 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog28 hydrog ? ? C DG 16 N1 ? ? ? 1_555 C DG 24 O6 ? ? A DG 16 A DG 24 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog29 hydrog ? ? C DG 16 N2 ? ? ? 1_555 C DG 24 O6 ? ? A DG 16 A DG 24 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog30 hydrog ? ? C DG 18 N1 ? ? ? 1_555 C DG 23 O6 ? ? A DG 18 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? C DG 18 N2 ? ? ? 1_555 C DG 23 N7 ? ? A DG 18 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? C DG 19 N7 ? ? ? 1_555 C DG 22 N2 ? ? A DG 19 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? C DG 19 O6 ? ? ? 1_555 C DG 22 N1 ? ? A DG 19 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? C DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 10 ? A DG 10 ? 1_555 71.3 ? 2 O6 ? C DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 13 ? A DG 13 ? 1_555 122.8 ? 3 O6 ? C DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 13 ? A DG 13 ? 1_555 62.9 ? 4 O6 ? C DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 14 ? A DG 14 ? 1_555 88.4 ? 5 O6 ? C DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 14 ? A DG 14 ? 1_555 102.2 ? 6 O6 ? C DG 13 ? A DG 13 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 14 ? A DG 14 ? 1_555 70.8 ? 7 O6 ? C DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 18 ? A DG 18 ? 1_555 109.5 ? 8 O6 ? C DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 18 ? A DG 18 ? 1_555 177.8 ? 9 O6 ? C DG 13 ? A DG 13 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 18 ? A DG 18 ? 1_555 117.6 ? 10 O6 ? C DG 14 ? A DG 14 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 18 ? A DG 18 ? 1_555 79.9 ? 11 O6 ? C DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 19 ? A DG 19 ? 1_555 163.0 ? 12 O6 ? C DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 19 ? A DG 19 ? 1_555 105.5 ? 13 O6 ? C DG 13 ? A DG 13 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 19 ? A DG 19 ? 1_555 66.5 ? 14 O6 ? C DG 14 ? A DG 14 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 19 ? A DG 19 ? 1_555 108.5 ? 15 O6 ? C DG 18 ? A DG 18 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 19 ? A DG 19 ? 1_555 73.2 ? 16 O6 ? C DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 22 ? A DG 22 ? 1_555 99.4 ? 17 O6 ? C DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 22 ? A DG 22 ? 1_555 71.8 ? 18 O6 ? C DG 13 ? A DG 13 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 22 ? A DG 22 ? 1_555 97.0 ? 19 O6 ? C DG 14 ? A DG 14 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 22 ? A DG 22 ? 1_555 167.8 ? 20 O6 ? C DG 18 ? A DG 18 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 22 ? A DG 22 ? 1_555 106.0 ? 21 O6 ? C DG 19 ? A DG 19 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 22 ? A DG 22 ? 1_555 64.2 ? 22 O6 ? C DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 23 ? A DG 23 ? 1_555 62.2 ? 23 O6 ? C DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 23 ? A DG 23 ? 1_555 109.9 ? 24 O6 ? C DG 13 ? A DG 13 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 23 ? A DG 23 ? 1_555 164.9 ? 25 O6 ? C DG 14 ? A DG 14 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 23 ? A DG 23 ? 1_555 124.4 ? 26 O6 ? C DG 18 ? A DG 18 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 23 ? A DG 23 ? 1_555 69.1 ? 27 O6 ? C DG 19 ? A DG 19 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 23 ? A DG 23 ? 1_555 105.1 ? 28 O6 ? C DG 22 ? A DG 22 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 23 ? A DG 23 ? 1_555 67.8 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code A _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 36 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 37 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.45 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 7 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER B 5 ? ASP B 6 ? SER H 20 ASP H 21 AA1 2 GLN B 161 ? PRO B 166 ? GLN H 156 PRO H 161 AA1 3 LYS B 135 ? GLY B 140 ? LYS H 135 GLY H 140 AA1 4 PRO B 208 ? LYS B 212 ? PRO H 198 LYS H 202 AA1 5 TRP B 219 ? TRP B 227 ? TRP H 207 TRP H 215 AA1 6 GLY B 238 ? HIS B 242 ? GLY H 226 HIS H 230 AA1 7 MET B 185 ? ALA B 188 ? MET H 180 ALA H 183 AA2 1 LYS B 77 ? SER B 79 ? LYS H 81 SER H 83 AA2 2 LEU B 59 ? ILE B 63 ? LEU H 64 ILE H 68 AA2 3 GLN B 15 ? ARG B 20 ? GLN H 30 ARG H 35 AA2 4 GLU B 25 ? SER B 34 ? GLU H 39 SER H 48 AA2 5 TRP B 37 ? THR B 40 ? TRP H 51 THR H 54 AA2 6 ALA B 101 ? LEU B 105 ? ALA H 104 LEU H 108 AA2 7 LEU B 81 ? ILE B 86 ? LEU H 85 ILE H 90 AA3 1 LEU B 46 ? TYR B 47 A LEU H 60 TYR H 60 AA3 2 LYS B 52 F ASN B 53 G LYS H 60 ASN H 60 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N SER B 5 ? N SER H 20 O VAL B 162 ? O VAL H 157 AA1 2 3 O VAL B 163 ? O VAL H 158 N VAL B 138 ? N VAL H 138 AA1 3 4 N ARG B 137 ? N ARG H 137 O VAL B 210 ? O VAL H 200 AA1 4 5 N MET B 211 ? N MET H 201 O TYR B 220 ? O TYR H 208 AA1 5 6 N TRP B 227 ? N TRP H 215 O PHE B 239 ? O PHE H 227 AA1 6 7 O TYR B 240 ? O TYR H 228 N PHE B 186 ? N PHE H 181 AA2 1 2 O LYS B 77 ? O LYS H 81 N ILE B 63 ? N ILE H 68 AA2 2 3 O ARG B 62 ? O ARG H 67 N MET B 17 ? N MET H 32 AA2 3 4 N ARG B 20 ? N ARG H 35 O GLU B 25 ? O GLU H 39 AA2 4 5 N SER B 31 ? N SER H 45 O LEU B 39 ? O LEU H 53 AA2 5 6 N VAL B 38 ? N VAL H 52 O MET B 103 ? O MET H 106 AA2 6 7 O LEU B 102 ? O LEU H 105 N TYR B 85 ? N TYR H 89 AA3 1 2 N TYR B 47 A N TYR H 60 O LYS B 52 F O LYS H 60 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software H 0G6 401 ? 13 'binding site for residue 0G6 H 401' AC2 Software A K 101 ? 8 'binding site for residue K A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 HIS B 43 ? HIS H 57 . ? 1_555 ? 2 AC1 13 TYR B 47 A TYR H 60 . ? 1_555 ? 3 AC1 13 LEU B 96 ? LEU H 99 . ? 1_555 ? 4 AC1 13 ASP B 199 ? ASP H 189 . ? 1_555 ? 5 AC1 13 ALA B 200 ? ALA H 190 . ? 1_555 ? 6 AC1 13 GLU B 202 ? GLU H 192 . ? 1_555 ? 7 AC1 13 GLY B 203 ? GLY H 193 . ? 1_555 ? 8 AC1 13 SER B 205 ? SER H 195 . ? 1_555 ? 9 AC1 13 SER B 226 ? SER H 214 . ? 1_555 ? 10 AC1 13 TRP B 227 ? TRP H 215 . ? 1_555 ? 11 AC1 13 GLY B 228 ? GLY H 216 . ? 1_555 ? 12 AC1 13 GLY B 230 ? GLY H 219 . ? 1_555 ? 13 AC1 13 HOH G . ? HOH H 515 . ? 1_555 ? 14 AC2 8 DG C 9 ? DG A 9 . ? 1_555 ? 15 AC2 8 DG C 10 ? DG A 10 . ? 1_555 ? 16 AC2 8 DG C 13 ? DG A 13 . ? 1_555 ? 17 AC2 8 DG C 14 ? DG A 14 . ? 1_555 ? 18 AC2 8 DG C 18 ? DG A 18 . ? 1_555 ? 19 AC2 8 DG C 19 ? DG A 19 . ? 1_555 ? 20 AC2 8 DG C 22 ? DG A 22 . ? 1_555 ? 21 AC2 8 DG C 23 ? DG A 23 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG H SER 195 ? ? C2 H 0G6 401 ? ? 1.96 2 1 NE2 H HIS 57 ? ? C3 H 0G6 401 ? ? 2.00 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DG 6 ? ? 112.32 119.70 -7.38 1.20 Y 2 1 "C3'" A DT 12 ? ? "C2'" A DT 12 ? ? "C1'" A DT 12 ? ? 97.57 102.40 -4.83 0.80 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE L 7 ? ? -138.23 -70.53 2 1 SER L 11 ? ? 70.65 48.66 3 1 ASP H 60 E ? 55.62 9.27 4 1 ASN H 60 G ? -151.61 60.62 5 1 HIS H 71 ? ? -145.10 -52.94 6 1 ILE H 79 ? ? -123.49 -69.26 7 1 GLU H 97 A ? -107.32 -63.55 8 1 ARG H 175 ? ? -66.42 90.99 # _pdbx_molecule_features.prd_id PRD_000020 _pdbx_molecule_features.name D-Phe-Pro-Arg-CH2Cl _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000020 _pdbx_molecule.asym_id D # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? H HOH 545 ? 6.00 . 2 1 O ? H HOH 546 ? 6.19 . 3 1 O ? H HOH 547 ? 6.23 . 4 1 O ? H HOH 548 ? 8.65 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 L THR -4 ? A THR 1 2 1 Y 1 L PHE -3 ? A PHE 2 3 1 Y 1 L GLY -2 ? A GLY 3 4 1 Y 1 L SER -1 ? A SER 4 5 1 Y 1 L GLY 0 ? A GLY 5 6 1 Y 1 L ASP 15 ? A ASP 34 7 1 Y 1 L GLY 16 ? A GLY 35 8 1 Y 1 L ARG 17 ? A ARG 36 9 1 Y 1 H TRP 147 A B TRP 148 10 1 Y 1 H THR 147 B B THR 149 11 1 Y 1 H ALA 147 C B ALA 150 12 1 Y 1 H ASN 147 D B ASN 151 13 1 Y 1 H VAL 147 E B VAL 152 14 1 Y 1 H GLY 147 F B GLY 153 15 1 Y 1 H LYS 147 G B LYS 154 16 1 Y 1 H PHE 245 ? B PHE 257 17 1 Y 1 H GLY 246 ? B GLY 258 18 1 Y 1 H GLU 247 ? B GLU 259 19 1 Y 1 A DG 1 ? C DG 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 0G6 N N N N 1 0G6 CA C N R 2 0G6 C C N N 3 0G6 O O N N 4 0G6 CB C N N 5 0G6 CG C Y N 6 0G6 CD1 C Y N 7 0G6 CD2 C Y N 8 0G6 CE1 C Y N 9 0G6 CE2 C Y N 10 0G6 CZ C Y N 11 0G6 N1 N N N 12 0G6 CA1 C N S 13 0G6 C1 C N N 14 0G6 O1 O N N 15 0G6 CB1 C N N 16 0G6 CG1 C N N 17 0G6 CD C N N 18 0G6 N2 N N N 19 0G6 CA2 C N S 20 0G6 C2 C N S 21 0G6 O2 O N N 22 0G6 CB2 C N N 23 0G6 CG2 C N N 24 0G6 CD3 C N N 25 0G6 NE N N N 26 0G6 CZ1 C N N 27 0G6 NH1 N N N 28 0G6 NH2 N N N 29 0G6 C3 C N N 30 0G6 CL CL N N 31 0G6 H H N N 32 0G6 H2 H N N 33 0G6 HA H N N 34 0G6 HB2 H N N 35 0G6 HB3 H N N 36 0G6 HD1 H N N 37 0G6 HD2 H N N 38 0G6 HE1 H N N 39 0G6 HE2 H N N 40 0G6 HZ H N N 41 0G6 HA1 H N N 42 0G6 HB21 H N N 43 0G6 HB31 H N N 44 0G6 HG2 H N N 45 0G6 HG3 H N N 46 0G6 HD21 H N N 47 0G6 HD3 H N N 48 0G6 H1 H N N 49 0G6 HA2 H N N 50 0G6 HB22 H N N 51 0G6 HB32 H N N 52 0G6 HG21 H N N 53 0G6 HG31 H N N 54 0G6 HD22 H N N 55 0G6 HD31 H N N 56 0G6 HE H N N 57 0G6 HH11 H N N 58 0G6 HH12 H N N 59 0G6 HH21 H N N 60 0G6 HH22 H N N 61 0G6 H11 H N N 62 0G6 H21 H N N 63 0G6 H33 H N N 64 0G6 H34 H N N 65 ALA N N N N 66 ALA CA C N S 67 ALA C C N N 68 ALA O O N N 69 ALA CB C N N 70 ALA OXT O N N 71 ALA H H N N 72 ALA H2 H N N 73 ALA HA H N N 74 ALA HB1 H N N 75 ALA HB2 H N N 76 ALA HB3 H N N 77 ALA HXT H N N 78 ARG N N N N 79 ARG CA C N S 80 ARG C C N N 81 ARG O O N N 82 ARG CB C N N 83 ARG CG C N N 84 ARG CD C N N 85 ARG NE N N N 86 ARG CZ C N N 87 ARG NH1 N N N 88 ARG NH2 N N N 89 ARG OXT O N N 90 ARG H H N N 91 ARG H2 H N N 92 ARG HA H N N 93 ARG HB2 H N N 94 ARG HB3 H N N 95 ARG HG2 H N N 96 ARG HG3 H N N 97 ARG HD2 H N N 98 ARG HD3 H N N 99 ARG HE H N N 100 ARG HH11 H N N 101 ARG HH12 H N N 102 ARG HH21 H N N 103 ARG HH22 H N N 104 ARG HXT H N N 105 ASN N N N N 106 ASN CA C N S 107 ASN C C N N 108 ASN O O N N 109 ASN CB C N N 110 ASN CG C N N 111 ASN OD1 O N N 112 ASN ND2 N N N 113 ASN OXT O N N 114 ASN H H N N 115 ASN H2 H N N 116 ASN HA H N N 117 ASN HB2 H N N 118 ASN HB3 H N N 119 ASN HD21 H N N 120 ASN HD22 H N N 121 ASN HXT H N N 122 ASP N N N N 123 ASP CA C N S 124 ASP C C N N 125 ASP O O N N 126 ASP CB C N N 127 ASP CG C N N 128 ASP OD1 O N N 129 ASP OD2 O N N 130 ASP OXT O N N 131 ASP H H N N 132 ASP H2 H N N 133 ASP HA H N N 134 ASP HB2 H N N 135 ASP HB3 H N N 136 ASP HD2 H N N 137 ASP HXT H N N 138 CYS N N N N 139 CYS CA C N R 140 CYS C C N N 141 CYS O O N N 142 CYS CB C N N 143 CYS SG S N N 144 CYS OXT O N N 145 CYS H H N N 146 CYS H2 H N N 147 CYS HA H N N 148 CYS HB2 H N N 149 CYS HB3 H N N 150 CYS HG H N N 151 CYS HXT H N N 152 DA OP3 O N N 153 DA P P N N 154 DA OP1 O N N 155 DA OP2 O N N 156 DA "O5'" O N N 157 DA "C5'" C N N 158 DA "C4'" C N R 159 DA "O4'" O N N 160 DA "C3'" C N S 161 DA "O3'" O N N 162 DA "C2'" C N N 163 DA "C1'" C N R 164 DA N9 N Y N 165 DA C8 C Y N 166 DA N7 N Y N 167 DA C5 C Y N 168 DA C6 C Y N 169 DA N6 N N N 170 DA N1 N Y N 171 DA C2 C Y N 172 DA N3 N Y N 173 DA C4 C Y N 174 DA HOP3 H N N 175 DA HOP2 H N N 176 DA "H5'" H N N 177 DA "H5''" H N N 178 DA "H4'" H N N 179 DA "H3'" H N N 180 DA "HO3'" H N N 181 DA "H2'" H N N 182 DA "H2''" H N N 183 DA "H1'" H N N 184 DA H8 H N N 185 DA H61 H N N 186 DA H62 H N N 187 DA H2 H N N 188 DC OP3 O N N 189 DC P P N N 190 DC OP1 O N N 191 DC OP2 O N N 192 DC "O5'" O N N 193 DC "C5'" C N N 194 DC "C4'" C N R 195 DC "O4'" O N N 196 DC "C3'" C N S 197 DC "O3'" O N N 198 DC "C2'" C N N 199 DC "C1'" C N R 200 DC N1 N N N 201 DC C2 C N N 202 DC O2 O N N 203 DC N3 N N N 204 DC C4 C N N 205 DC N4 N N N 206 DC C5 C N N 207 DC C6 C N N 208 DC HOP3 H N N 209 DC HOP2 H N N 210 DC "H5'" H N N 211 DC "H5''" H N N 212 DC "H4'" H N N 213 DC "H3'" H N N 214 DC "HO3'" H N N 215 DC "H2'" H N N 216 DC "H2''" H N N 217 DC "H1'" H N N 218 DC H41 H N N 219 DC H42 H N N 220 DC H5 H N N 221 DC H6 H N N 222 DG OP3 O N N 223 DG P P N N 224 DG OP1 O N N 225 DG OP2 O N N 226 DG "O5'" O N N 227 DG "C5'" C N N 228 DG "C4'" C N R 229 DG "O4'" O N N 230 DG "C3'" C N S 231 DG "O3'" O N N 232 DG "C2'" C N N 233 DG "C1'" C N R 234 DG N9 N Y N 235 DG C8 C Y N 236 DG N7 N Y N 237 DG C5 C Y N 238 DG C6 C N N 239 DG O6 O N N 240 DG N1 N N N 241 DG C2 C N N 242 DG N2 N N N 243 DG N3 N N N 244 DG C4 C Y N 245 DG HOP3 H N N 246 DG HOP2 H N N 247 DG "H5'" H N N 248 DG "H5''" H N N 249 DG "H4'" H N N 250 DG "H3'" H N N 251 DG "HO3'" H N N 252 DG "H2'" H N N 253 DG "H2''" H N N 254 DG "H1'" H N N 255 DG H8 H N N 256 DG H1 H N N 257 DG H21 H N N 258 DG H22 H N N 259 DT OP3 O N N 260 DT P P N N 261 DT OP1 O N N 262 DT OP2 O N N 263 DT "O5'" O N N 264 DT "C5'" C N N 265 DT "C4'" C N R 266 DT "O4'" O N N 267 DT "C3'" C N S 268 DT "O3'" O N N 269 DT "C2'" C N N 270 DT "C1'" C N R 271 DT N1 N N N 272 DT C2 C N N 273 DT O2 O N N 274 DT N3 N N N 275 DT C4 C N N 276 DT O4 O N N 277 DT C5 C N N 278 DT C7 C N N 279 DT C6 C N N 280 DT HOP3 H N N 281 DT HOP2 H N N 282 DT "H5'" H N N 283 DT "H5''" H N N 284 DT "H4'" H N N 285 DT "H3'" H N N 286 DT "HO3'" H N N 287 DT "H2'" H N N 288 DT "H2''" H N N 289 DT "H1'" H N N 290 DT H3 H N N 291 DT H71 H N N 292 DT H72 H N N 293 DT H73 H N N 294 DT H6 H N N 295 GLN N N N N 296 GLN CA C N S 297 GLN C C N N 298 GLN O O N N 299 GLN CB C N N 300 GLN CG C N N 301 GLN CD C N N 302 GLN OE1 O N N 303 GLN NE2 N N N 304 GLN OXT O N N 305 GLN H H N N 306 GLN H2 H N N 307 GLN HA H N N 308 GLN HB2 H N N 309 GLN HB3 H N N 310 GLN HG2 H N N 311 GLN HG3 H N N 312 GLN HE21 H N N 313 GLN HE22 H N N 314 GLN HXT H N N 315 GLU N N N N 316 GLU CA C N S 317 GLU C C N N 318 GLU O O N N 319 GLU CB C N N 320 GLU CG C N N 321 GLU CD C N N 322 GLU OE1 O N N 323 GLU OE2 O N N 324 GLU OXT O N N 325 GLU H H N N 326 GLU H2 H N N 327 GLU HA H N N 328 GLU HB2 H N N 329 GLU HB3 H N N 330 GLU HG2 H N N 331 GLU HG3 H N N 332 GLU HE2 H N N 333 GLU HXT H N N 334 GLY N N N N 335 GLY CA C N N 336 GLY C C N N 337 GLY O O N N 338 GLY OXT O N N 339 GLY H H N N 340 GLY H2 H N N 341 GLY HA2 H N N 342 GLY HA3 H N N 343 GLY HXT H N N 344 HIS N N N N 345 HIS CA C N S 346 HIS C C N N 347 HIS O O N N 348 HIS CB C N N 349 HIS CG C Y N 350 HIS ND1 N Y N 351 HIS CD2 C Y N 352 HIS CE1 C Y N 353 HIS NE2 N Y N 354 HIS OXT O N N 355 HIS H H N N 356 HIS H2 H N N 357 HIS HA H N N 358 HIS HB2 H N N 359 HIS HB3 H N N 360 HIS HD1 H N N 361 HIS HD2 H N N 362 HIS HE1 H N N 363 HIS HE2 H N N 364 HIS HXT H N N 365 HOH O O N N 366 HOH H1 H N N 367 HOH H2 H N N 368 ILE N N N N 369 ILE CA C N S 370 ILE C C N N 371 ILE O O N N 372 ILE CB C N S 373 ILE CG1 C N N 374 ILE CG2 C N N 375 ILE CD1 C N N 376 ILE OXT O N N 377 ILE H H N N 378 ILE H2 H N N 379 ILE HA H N N 380 ILE HB H N N 381 ILE HG12 H N N 382 ILE HG13 H N N 383 ILE HG21 H N N 384 ILE HG22 H N N 385 ILE HG23 H N N 386 ILE HD11 H N N 387 ILE HD12 H N N 388 ILE HD13 H N N 389 ILE HXT H N N 390 K K K N N 391 LEU N N N N 392 LEU CA C N S 393 LEU C C N N 394 LEU O O N N 395 LEU CB C N N 396 LEU CG C N N 397 LEU CD1 C N N 398 LEU CD2 C N N 399 LEU OXT O N N 400 LEU H H N N 401 LEU H2 H N N 402 LEU HA H N N 403 LEU HB2 H N N 404 LEU HB3 H N N 405 LEU HG H N N 406 LEU HD11 H N N 407 LEU HD12 H N N 408 LEU HD13 H N N 409 LEU HD21 H N N 410 LEU HD22 H N N 411 LEU HD23 H N N 412 LEU HXT H N N 413 LYS N N N N 414 LYS CA C N S 415 LYS C C N N 416 LYS O O N N 417 LYS CB C N N 418 LYS CG C N N 419 LYS CD C N N 420 LYS CE C N N 421 LYS NZ N N N 422 LYS OXT O N N 423 LYS H H N N 424 LYS H2 H N N 425 LYS HA H N N 426 LYS HB2 H N N 427 LYS HB3 H N N 428 LYS HG2 H N N 429 LYS HG3 H N N 430 LYS HD2 H N N 431 LYS HD3 H N N 432 LYS HE2 H N N 433 LYS HE3 H N N 434 LYS HZ1 H N N 435 LYS HZ2 H N N 436 LYS HZ3 H N N 437 LYS HXT H N N 438 MET N N N N 439 MET CA C N S 440 MET C C N N 441 MET O O N N 442 MET CB C N N 443 MET CG C N N 444 MET SD S N N 445 MET CE C N N 446 MET OXT O N N 447 MET H H N N 448 MET H2 H N N 449 MET HA H N N 450 MET HB2 H N N 451 MET HB3 H N N 452 MET HG2 H N N 453 MET HG3 H N N 454 MET HE1 H N N 455 MET HE2 H N N 456 MET HE3 H N N 457 MET HXT H N N 458 PHE N N N N 459 PHE CA C N S 460 PHE C C N N 461 PHE O O N N 462 PHE CB C N N 463 PHE CG C Y N 464 PHE CD1 C Y N 465 PHE CD2 C Y N 466 PHE CE1 C Y N 467 PHE CE2 C Y N 468 PHE CZ C Y N 469 PHE OXT O N N 470 PHE H H N N 471 PHE H2 H N N 472 PHE HA H N N 473 PHE HB2 H N N 474 PHE HB3 H N N 475 PHE HD1 H N N 476 PHE HD2 H N N 477 PHE HE1 H N N 478 PHE HE2 H N N 479 PHE HZ H N N 480 PHE HXT H N N 481 PRO N N N N 482 PRO CA C N S 483 PRO C C N N 484 PRO O O N N 485 PRO CB C N N 486 PRO CG C N N 487 PRO CD C N N 488 PRO OXT O N N 489 PRO H H N N 490 PRO HA H N N 491 PRO HB2 H N N 492 PRO HB3 H N N 493 PRO HG2 H N N 494 PRO HG3 H N N 495 PRO HD2 H N N 496 PRO HD3 H N N 497 PRO HXT H N N 498 SER N N N N 499 SER CA C N S 500 SER C C N N 501 SER O O N N 502 SER CB C N N 503 SER OG O N N 504 SER OXT O N N 505 SER H H N N 506 SER H2 H N N 507 SER HA H N N 508 SER HB2 H N N 509 SER HB3 H N N 510 SER HG H N N 511 SER HXT H N N 512 THR N N N N 513 THR CA C N S 514 THR C C N N 515 THR O O N N 516 THR CB C N R 517 THR OG1 O N N 518 THR CG2 C N N 519 THR OXT O N N 520 THR H H N N 521 THR H2 H N N 522 THR HA H N N 523 THR HB H N N 524 THR HG1 H N N 525 THR HG21 H N N 526 THR HG22 H N N 527 THR HG23 H N N 528 THR HXT H N N 529 TRP N N N N 530 TRP CA C N S 531 TRP C C N N 532 TRP O O N N 533 TRP CB C N N 534 TRP CG C Y N 535 TRP CD1 C Y N 536 TRP CD2 C Y N 537 TRP NE1 N Y N 538 TRP CE2 C Y N 539 TRP CE3 C Y N 540 TRP CZ2 C Y N 541 TRP CZ3 C Y N 542 TRP CH2 C Y N 543 TRP OXT O N N 544 TRP H H N N 545 TRP H2 H N N 546 TRP HA H N N 547 TRP HB2 H N N 548 TRP HB3 H N N 549 TRP HD1 H N N 550 TRP HE1 H N N 551 TRP HE3 H N N 552 TRP HZ2 H N N 553 TRP HZ3 H N N 554 TRP HH2 H N N 555 TRP HXT H N N 556 TYR N N N N 557 TYR CA C N S 558 TYR C C N N 559 TYR O O N N 560 TYR CB C N N 561 TYR CG C Y N 562 TYR CD1 C Y N 563 TYR CD2 C Y N 564 TYR CE1 C Y N 565 TYR CE2 C Y N 566 TYR CZ C Y N 567 TYR OH O N N 568 TYR OXT O N N 569 TYR H H N N 570 TYR H2 H N N 571 TYR HA H N N 572 TYR HB2 H N N 573 TYR HB3 H N N 574 TYR HD1 H N N 575 TYR HD2 H N N 576 TYR HE1 H N N 577 TYR HE2 H N N 578 TYR HH H N N 579 TYR HXT H N N 580 VAL N N N N 581 VAL CA C N S 582 VAL C C N N 583 VAL O O N N 584 VAL CB C N N 585 VAL CG1 C N N 586 VAL CG2 C N N 587 VAL OXT O N N 588 VAL H H N N 589 VAL H2 H N N 590 VAL HA H N N 591 VAL HB H N N 592 VAL HG11 H N N 593 VAL HG12 H N N 594 VAL HG13 H N N 595 VAL HG21 H N N 596 VAL HG22 H N N 597 VAL HG23 H N N 598 VAL HXT H N N 599 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0G6 N CA sing N N 1 0G6 N H sing N N 2 0G6 N H2 sing N N 3 0G6 CA C sing N N 4 0G6 CA CB sing N N 5 0G6 CA HA sing N N 6 0G6 C O doub N N 7 0G6 C N1 sing N N 8 0G6 CB CG sing N N 9 0G6 CB HB2 sing N N 10 0G6 CB HB3 sing N N 11 0G6 CG CD1 doub Y N 12 0G6 CG CD2 sing Y N 13 0G6 CD1 CE1 sing Y N 14 0G6 CD1 HD1 sing N N 15 0G6 CD2 CE2 doub Y N 16 0G6 CD2 HD2 sing N N 17 0G6 CE1 CZ doub Y N 18 0G6 CE1 HE1 sing N N 19 0G6 CE2 CZ sing Y N 20 0G6 CE2 HE2 sing N N 21 0G6 CZ HZ sing N N 22 0G6 N1 CA1 sing N N 23 0G6 N1 CD sing N N 24 0G6 CA1 C1 sing N N 25 0G6 CA1 CB1 sing N N 26 0G6 CA1 HA1 sing N N 27 0G6 C1 O1 doub N N 28 0G6 C1 N2 sing N N 29 0G6 CB1 CG1 sing N N 30 0G6 CB1 HB21 sing N N 31 0G6 CB1 HB31 sing N N 32 0G6 CG1 CD sing N N 33 0G6 CG1 HG2 sing N N 34 0G6 CG1 HG3 sing N N 35 0G6 CD HD21 sing N N 36 0G6 CD HD3 sing N N 37 0G6 N2 CA2 sing N N 38 0G6 N2 H1 sing N N 39 0G6 CA2 C2 sing N N 40 0G6 CA2 CB2 sing N N 41 0G6 CA2 HA2 sing N N 42 0G6 C2 O2 sing N N 43 0G6 C2 C3 sing N N 44 0G6 CB2 CG2 sing N N 45 0G6 CB2 HB22 sing N N 46 0G6 CB2 HB32 sing N N 47 0G6 CG2 CD3 sing N N 48 0G6 CG2 HG21 sing N N 49 0G6 CG2 HG31 sing N N 50 0G6 CD3 NE sing N N 51 0G6 CD3 HD22 sing N N 52 0G6 CD3 HD31 sing N N 53 0G6 NE CZ1 sing N N 54 0G6 NE HE sing N N 55 0G6 CZ1 NH1 sing N N 56 0G6 CZ1 NH2 doub N N 57 0G6 NH1 HH11 sing N N 58 0G6 NH1 HH12 sing N N 59 0G6 NH2 HH21 sing N N 60 0G6 NH2 HH22 sing N N 61 0G6 C3 H11 sing N N 62 0G6 C3 H21 sing N N 63 0G6 CL C3 sing N N 64 0G6 C2 H33 sing N N 65 0G6 O2 H34 sing N N 66 ALA N CA sing N N 67 ALA N H sing N N 68 ALA N H2 sing N N 69 ALA CA C sing N N 70 ALA CA CB sing N N 71 ALA CA HA sing N N 72 ALA C O doub N N 73 ALA C OXT sing N N 74 ALA CB HB1 sing N N 75 ALA CB HB2 sing N N 76 ALA CB HB3 sing N N 77 ALA OXT HXT sing N N 78 ARG N CA sing N N 79 ARG N H sing N N 80 ARG N H2 sing N N 81 ARG CA C sing N N 82 ARG CA CB sing N N 83 ARG CA HA sing N N 84 ARG C O doub N N 85 ARG C OXT sing N N 86 ARG CB CG sing N N 87 ARG CB HB2 sing N N 88 ARG CB HB3 sing N N 89 ARG CG CD sing N N 90 ARG CG HG2 sing N N 91 ARG CG HG3 sing N N 92 ARG CD NE sing N N 93 ARG CD HD2 sing N N 94 ARG CD HD3 sing N N 95 ARG NE CZ sing N N 96 ARG NE HE sing N N 97 ARG CZ NH1 sing N N 98 ARG CZ NH2 doub N N 99 ARG NH1 HH11 sing N N 100 ARG NH1 HH12 sing N N 101 ARG NH2 HH21 sing N N 102 ARG NH2 HH22 sing N N 103 ARG OXT HXT sing N N 104 ASN N CA sing N N 105 ASN N H sing N N 106 ASN N H2 sing N N 107 ASN CA C sing N N 108 ASN CA CB sing N N 109 ASN CA HA sing N N 110 ASN C O doub N N 111 ASN C OXT sing N N 112 ASN CB CG sing N N 113 ASN CB HB2 sing N N 114 ASN CB HB3 sing N N 115 ASN CG OD1 doub N N 116 ASN CG ND2 sing N N 117 ASN ND2 HD21 sing N N 118 ASN ND2 HD22 sing N N 119 ASN OXT HXT sing N N 120 ASP N CA sing N N 121 ASP N H sing N N 122 ASP N H2 sing N N 123 ASP CA C sing N N 124 ASP CA CB sing N N 125 ASP CA HA sing N N 126 ASP C O doub N N 127 ASP C OXT sing N N 128 ASP CB CG sing N N 129 ASP CB HB2 sing N N 130 ASP CB HB3 sing N N 131 ASP CG OD1 doub N N 132 ASP CG OD2 sing N N 133 ASP OD2 HD2 sing N N 134 ASP OXT HXT sing N N 135 CYS N CA sing N N 136 CYS N H sing N N 137 CYS N H2 sing N N 138 CYS CA C sing N N 139 CYS CA CB sing N N 140 CYS CA HA sing N N 141 CYS C O doub N N 142 CYS C OXT sing N N 143 CYS CB SG sing N N 144 CYS CB HB2 sing N N 145 CYS CB HB3 sing N N 146 CYS SG HG sing N N 147 CYS OXT HXT sing N N 148 DA OP3 P sing N N 149 DA OP3 HOP3 sing N N 150 DA P OP1 doub N N 151 DA P OP2 sing N N 152 DA P "O5'" sing N N 153 DA OP2 HOP2 sing N N 154 DA "O5'" "C5'" sing N N 155 DA "C5'" "C4'" sing N N 156 DA "C5'" "H5'" sing N N 157 DA "C5'" "H5''" sing N N 158 DA "C4'" "O4'" sing N N 159 DA "C4'" "C3'" sing N N 160 DA "C4'" "H4'" sing N N 161 DA "O4'" "C1'" sing N N 162 DA "C3'" "O3'" sing N N 163 DA "C3'" "C2'" sing N N 164 DA "C3'" "H3'" sing N N 165 DA "O3'" "HO3'" sing N N 166 DA "C2'" "C1'" sing N N 167 DA "C2'" "H2'" sing N N 168 DA "C2'" "H2''" sing N N 169 DA "C1'" N9 sing N N 170 DA "C1'" "H1'" sing N N 171 DA N9 C8 sing Y N 172 DA N9 C4 sing Y N 173 DA C8 N7 doub Y N 174 DA C8 H8 sing N N 175 DA N7 C5 sing Y N 176 DA C5 C6 sing Y N 177 DA C5 C4 doub Y N 178 DA C6 N6 sing N N 179 DA C6 N1 doub Y N 180 DA N6 H61 sing N N 181 DA N6 H62 sing N N 182 DA N1 C2 sing Y N 183 DA C2 N3 doub Y N 184 DA C2 H2 sing N N 185 DA N3 C4 sing Y N 186 DC OP3 P sing N N 187 DC OP3 HOP3 sing N N 188 DC P OP1 doub N N 189 DC P OP2 sing N N 190 DC P "O5'" sing N N 191 DC OP2 HOP2 sing N N 192 DC "O5'" "C5'" sing N N 193 DC "C5'" "C4'" sing N N 194 DC "C5'" "H5'" sing N N 195 DC "C5'" "H5''" sing N N 196 DC "C4'" "O4'" sing N N 197 DC "C4'" "C3'" sing N N 198 DC "C4'" "H4'" sing N N 199 DC "O4'" "C1'" sing N N 200 DC "C3'" "O3'" sing N N 201 DC "C3'" "C2'" sing N N 202 DC "C3'" "H3'" sing N N 203 DC "O3'" "HO3'" sing N N 204 DC "C2'" "C1'" sing N N 205 DC "C2'" "H2'" sing N N 206 DC "C2'" "H2''" sing N N 207 DC "C1'" N1 sing N N 208 DC "C1'" "H1'" sing N N 209 DC N1 C2 sing N N 210 DC N1 C6 sing N N 211 DC C2 O2 doub N N 212 DC C2 N3 sing N N 213 DC N3 C4 doub N N 214 DC C4 N4 sing N N 215 DC C4 C5 sing N N 216 DC N4 H41 sing N N 217 DC N4 H42 sing N N 218 DC C5 C6 doub N N 219 DC C5 H5 sing N N 220 DC C6 H6 sing N N 221 DG OP3 P sing N N 222 DG OP3 HOP3 sing N N 223 DG P OP1 doub N N 224 DG P OP2 sing N N 225 DG P "O5'" sing N N 226 DG OP2 HOP2 sing N N 227 DG "O5'" "C5'" sing N N 228 DG "C5'" "C4'" sing N N 229 DG "C5'" "H5'" sing N N 230 DG "C5'" "H5''" sing N N 231 DG "C4'" "O4'" sing N N 232 DG "C4'" "C3'" sing N N 233 DG "C4'" "H4'" sing N N 234 DG "O4'" "C1'" sing N N 235 DG "C3'" "O3'" sing N N 236 DG "C3'" "C2'" sing N N 237 DG "C3'" "H3'" sing N N 238 DG "O3'" "HO3'" sing N N 239 DG "C2'" "C1'" sing N N 240 DG "C2'" "H2'" sing N N 241 DG "C2'" "H2''" sing N N 242 DG "C1'" N9 sing N N 243 DG "C1'" "H1'" sing N N 244 DG N9 C8 sing Y N 245 DG N9 C4 sing Y N 246 DG C8 N7 doub Y N 247 DG C8 H8 sing N N 248 DG N7 C5 sing Y N 249 DG C5 C6 sing N N 250 DG C5 C4 doub Y N 251 DG C6 O6 doub N N 252 DG C6 N1 sing N N 253 DG N1 C2 sing N N 254 DG N1 H1 sing N N 255 DG C2 N2 sing N N 256 DG C2 N3 doub N N 257 DG N2 H21 sing N N 258 DG N2 H22 sing N N 259 DG N3 C4 sing N N 260 DT OP3 P sing N N 261 DT OP3 HOP3 sing N N 262 DT P OP1 doub N N 263 DT P OP2 sing N N 264 DT P "O5'" sing N N 265 DT OP2 HOP2 sing N N 266 DT "O5'" "C5'" sing N N 267 DT "C5'" "C4'" sing N N 268 DT "C5'" "H5'" sing N N 269 DT "C5'" "H5''" sing N N 270 DT "C4'" "O4'" sing N N 271 DT "C4'" "C3'" sing N N 272 DT "C4'" "H4'" sing N N 273 DT "O4'" "C1'" sing N N 274 DT "C3'" "O3'" sing N N 275 DT "C3'" "C2'" sing N N 276 DT "C3'" "H3'" sing N N 277 DT "O3'" "HO3'" sing N N 278 DT "C2'" "C1'" sing N N 279 DT "C2'" "H2'" sing N N 280 DT "C2'" "H2''" sing N N 281 DT "C1'" N1 sing N N 282 DT "C1'" "H1'" sing N N 283 DT N1 C2 sing N N 284 DT N1 C6 sing N N 285 DT C2 O2 doub N N 286 DT C2 N3 sing N N 287 DT N3 C4 sing N N 288 DT N3 H3 sing N N 289 DT C4 O4 doub N N 290 DT C4 C5 sing N N 291 DT C5 C7 sing N N 292 DT C5 C6 doub N N 293 DT C7 H71 sing N N 294 DT C7 H72 sing N N 295 DT C7 H73 sing N N 296 DT C6 H6 sing N N 297 GLN N CA sing N N 298 GLN N H sing N N 299 GLN N H2 sing N N 300 GLN CA C sing N N 301 GLN CA CB sing N N 302 GLN CA HA sing N N 303 GLN C O doub N N 304 GLN C OXT sing N N 305 GLN CB CG sing N N 306 GLN CB HB2 sing N N 307 GLN CB HB3 sing N N 308 GLN CG CD sing N N 309 GLN CG HG2 sing N N 310 GLN CG HG3 sing N N 311 GLN CD OE1 doub N N 312 GLN CD NE2 sing N N 313 GLN NE2 HE21 sing N N 314 GLN NE2 HE22 sing N N 315 GLN OXT HXT sing N N 316 GLU N CA sing N N 317 GLU N H sing N N 318 GLU N H2 sing N N 319 GLU CA C sing N N 320 GLU CA CB sing N N 321 GLU CA HA sing N N 322 GLU C O doub N N 323 GLU C OXT sing N N 324 GLU CB CG sing N N 325 GLU CB HB2 sing N N 326 GLU CB HB3 sing N N 327 GLU CG CD sing N N 328 GLU CG HG2 sing N N 329 GLU CG HG3 sing N N 330 GLU CD OE1 doub N N 331 GLU CD OE2 sing N N 332 GLU OE2 HE2 sing N N 333 GLU OXT HXT sing N N 334 GLY N CA sing N N 335 GLY N H sing N N 336 GLY N H2 sing N N 337 GLY CA C sing N N 338 GLY CA HA2 sing N N 339 GLY CA HA3 sing N N 340 GLY C O doub N N 341 GLY C OXT sing N N 342 GLY OXT HXT sing N N 343 HIS N CA sing N N 344 HIS N H sing N N 345 HIS N H2 sing N N 346 HIS CA C sing N N 347 HIS CA CB sing N N 348 HIS CA HA sing N N 349 HIS C O doub N N 350 HIS C OXT sing N N 351 HIS CB CG sing N N 352 HIS CB HB2 sing N N 353 HIS CB HB3 sing N N 354 HIS CG ND1 sing Y N 355 HIS CG CD2 doub Y N 356 HIS ND1 CE1 doub Y N 357 HIS ND1 HD1 sing N N 358 HIS CD2 NE2 sing Y N 359 HIS CD2 HD2 sing N N 360 HIS CE1 NE2 sing Y N 361 HIS CE1 HE1 sing N N 362 HIS NE2 HE2 sing N N 363 HIS OXT HXT sing N N 364 HOH O H1 sing N N 365 HOH O H2 sing N N 366 ILE N CA sing N N 367 ILE N H sing N N 368 ILE N H2 sing N N 369 ILE CA C sing N N 370 ILE CA CB sing N N 371 ILE CA HA sing N N 372 ILE C O doub N N 373 ILE C OXT sing N N 374 ILE CB CG1 sing N N 375 ILE CB CG2 sing N N 376 ILE CB HB sing N N 377 ILE CG1 CD1 sing N N 378 ILE CG1 HG12 sing N N 379 ILE CG1 HG13 sing N N 380 ILE CG2 HG21 sing N N 381 ILE CG2 HG22 sing N N 382 ILE CG2 HG23 sing N N 383 ILE CD1 HD11 sing N N 384 ILE CD1 HD12 sing N N 385 ILE CD1 HD13 sing N N 386 ILE OXT HXT sing N N 387 LEU N CA sing N N 388 LEU N H sing N N 389 LEU N H2 sing N N 390 LEU CA C sing N N 391 LEU CA CB sing N N 392 LEU CA HA sing N N 393 LEU C O doub N N 394 LEU C OXT sing N N 395 LEU CB CG sing N N 396 LEU CB HB2 sing N N 397 LEU CB HB3 sing N N 398 LEU CG CD1 sing N N 399 LEU CG CD2 sing N N 400 LEU CG HG sing N N 401 LEU CD1 HD11 sing N N 402 LEU CD1 HD12 sing N N 403 LEU CD1 HD13 sing N N 404 LEU CD2 HD21 sing N N 405 LEU CD2 HD22 sing N N 406 LEU CD2 HD23 sing N N 407 LEU OXT HXT sing N N 408 LYS N CA sing N N 409 LYS N H sing N N 410 LYS N H2 sing N N 411 LYS CA C sing N N 412 LYS CA CB sing N N 413 LYS CA HA sing N N 414 LYS C O doub N N 415 LYS C OXT sing N N 416 LYS CB CG sing N N 417 LYS CB HB2 sing N N 418 LYS CB HB3 sing N N 419 LYS CG CD sing N N 420 LYS CG HG2 sing N N 421 LYS CG HG3 sing N N 422 LYS CD CE sing N N 423 LYS CD HD2 sing N N 424 LYS CD HD3 sing N N 425 LYS CE NZ sing N N 426 LYS CE HE2 sing N N 427 LYS CE HE3 sing N N 428 LYS NZ HZ1 sing N N 429 LYS NZ HZ2 sing N N 430 LYS NZ HZ3 sing N N 431 LYS OXT HXT sing N N 432 MET N CA sing N N 433 MET N H sing N N 434 MET N H2 sing N N 435 MET CA C sing N N 436 MET CA CB sing N N 437 MET CA HA sing N N 438 MET C O doub N N 439 MET C OXT sing N N 440 MET CB CG sing N N 441 MET CB HB2 sing N N 442 MET CB HB3 sing N N 443 MET CG SD sing N N 444 MET CG HG2 sing N N 445 MET CG HG3 sing N N 446 MET SD CE sing N N 447 MET CE HE1 sing N N 448 MET CE HE2 sing N N 449 MET CE HE3 sing N N 450 MET OXT HXT sing N N 451 PHE N CA sing N N 452 PHE N H sing N N 453 PHE N H2 sing N N 454 PHE CA C sing N N 455 PHE CA CB sing N N 456 PHE CA HA sing N N 457 PHE C O doub N N 458 PHE C OXT sing N N 459 PHE CB CG sing N N 460 PHE CB HB2 sing N N 461 PHE CB HB3 sing N N 462 PHE CG CD1 doub Y N 463 PHE CG CD2 sing Y N 464 PHE CD1 CE1 sing Y N 465 PHE CD1 HD1 sing N N 466 PHE CD2 CE2 doub Y N 467 PHE CD2 HD2 sing N N 468 PHE CE1 CZ doub Y N 469 PHE CE1 HE1 sing N N 470 PHE CE2 CZ sing Y N 471 PHE CE2 HE2 sing N N 472 PHE CZ HZ sing N N 473 PHE OXT HXT sing N N 474 PRO N CA sing N N 475 PRO N CD sing N N 476 PRO N H sing N N 477 PRO CA C sing N N 478 PRO CA CB sing N N 479 PRO CA HA sing N N 480 PRO C O doub N N 481 PRO C OXT sing N N 482 PRO CB CG sing N N 483 PRO CB HB2 sing N N 484 PRO CB HB3 sing N N 485 PRO CG CD sing N N 486 PRO CG HG2 sing N N 487 PRO CG HG3 sing N N 488 PRO CD HD2 sing N N 489 PRO CD HD3 sing N N 490 PRO OXT HXT sing N N 491 SER N CA sing N N 492 SER N H sing N N 493 SER N H2 sing N N 494 SER CA C sing N N 495 SER CA CB sing N N 496 SER CA HA sing N N 497 SER C O doub N N 498 SER C OXT sing N N 499 SER CB OG sing N N 500 SER CB HB2 sing N N 501 SER CB HB3 sing N N 502 SER OG HG sing N N 503 SER OXT HXT sing N N 504 THR N CA sing N N 505 THR N H sing N N 506 THR N H2 sing N N 507 THR CA C sing N N 508 THR CA CB sing N N 509 THR CA HA sing N N 510 THR C O doub N N 511 THR C OXT sing N N 512 THR CB OG1 sing N N 513 THR CB CG2 sing N N 514 THR CB HB sing N N 515 THR OG1 HG1 sing N N 516 THR CG2 HG21 sing N N 517 THR CG2 HG22 sing N N 518 THR CG2 HG23 sing N N 519 THR OXT HXT sing N N 520 TRP N CA sing N N 521 TRP N H sing N N 522 TRP N H2 sing N N 523 TRP CA C sing N N 524 TRP CA CB sing N N 525 TRP CA HA sing N N 526 TRP C O doub N N 527 TRP C OXT sing N N 528 TRP CB CG sing N N 529 TRP CB HB2 sing N N 530 TRP CB HB3 sing N N 531 TRP CG CD1 doub Y N 532 TRP CG CD2 sing Y N 533 TRP CD1 NE1 sing Y N 534 TRP CD1 HD1 sing N N 535 TRP CD2 CE2 doub Y N 536 TRP CD2 CE3 sing Y N 537 TRP NE1 CE2 sing Y N 538 TRP NE1 HE1 sing N N 539 TRP CE2 CZ2 sing Y N 540 TRP CE3 CZ3 doub Y N 541 TRP CE3 HE3 sing N N 542 TRP CZ2 CH2 doub Y N 543 TRP CZ2 HZ2 sing N N 544 TRP CZ3 CH2 sing Y N 545 TRP CZ3 HZ3 sing N N 546 TRP CH2 HH2 sing N N 547 TRP OXT HXT sing N N 548 TYR N CA sing N N 549 TYR N H sing N N 550 TYR N H2 sing N N 551 TYR CA C sing N N 552 TYR CA CB sing N N 553 TYR CA HA sing N N 554 TYR C O doub N N 555 TYR C OXT sing N N 556 TYR CB CG sing N N 557 TYR CB HB2 sing N N 558 TYR CB HB3 sing N N 559 TYR CG CD1 doub Y N 560 TYR CG CD2 sing Y N 561 TYR CD1 CE1 sing Y N 562 TYR CD1 HD1 sing N N 563 TYR CD2 CE2 doub Y N 564 TYR CD2 HD2 sing N N 565 TYR CE1 CZ doub Y N 566 TYR CE1 HE1 sing N N 567 TYR CE2 CZ sing Y N 568 TYR CE2 HE2 sing N N 569 TYR CZ OH sing N N 570 TYR OH HH sing N N 571 TYR OXT HXT sing N N 572 VAL N CA sing N N 573 VAL N H sing N N 574 VAL N H2 sing N N 575 VAL CA C sing N N 576 VAL CA CB sing N N 577 VAL CA HA sing N N 578 VAL C O doub N N 579 VAL C OXT sing N N 580 VAL CB CG1 sing N N 581 VAL CB CG2 sing N N 582 VAL CB HB sing N N 583 VAL CG1 HG11 sing N N 584 VAL CG1 HG12 sing N N 585 VAL CG1 HG13 sing N N 586 VAL CG2 HG21 sing N N 587 VAL CG2 HG22 sing N N 588 VAL CG2 HG23 sing N N 589 VAL OXT HXT sing N N 590 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5CMX 'double helix' 5CMX 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DT 2 1_555 C DA 30 1_555 -0.075 0.178 -0.123 -8.247 -14.426 -0.758 1 A_DT2:DA30_A A 2 ? A 30 ? 20 1 1 C DG 3 1_555 C DC 29 1_555 -0.686 0.137 -0.385 -18.685 -21.435 22.465 2 A_DG3:DC29_A A 3 ? A 29 ? 22 1 1 C DA 4 1_555 C DT 28 1_555 -0.157 -0.319 0.277 5.555 -10.497 -2.058 3 A_DA4:DT28_A A 4 ? A 28 ? 20 1 1 C DC 5 1_555 C DG 27 1_555 -0.086 0.144 0.548 -11.234 -7.651 -2.228 4 A_DC5:DG27_A A 5 ? A 27 ? 19 1 1 C DG 6 1_555 C DC 26 1_555 -0.779 -0.207 0.336 -7.006 14.298 2.695 5 A_DG6:DC26_A A 6 ? A 26 ? 19 1 1 C DT 7 1_555 C DG 25 1_555 2.666 0.851 0.616 -6.378 -10.722 41.112 6 A_DT7:DG25_A A 7 ? A 25 ? ? 1 1 C DA 8 1_555 C DT 17 1_555 -2.748 -1.640 -1.614 21.070 -6.788 -99.770 7 A_DA8:DT17_A A 8 ? A 17 ? 24 4 1 C DG 24 1_555 C DG 16 1_555 -2.092 -1.545 -0.207 20.986 21.230 126.810 8 A_DG24:DG16_A A 24 ? A 16 ? ? 2 1 C DG 9 1_555 C DG 23 1_555 -1.075 -3.540 0.620 -18.886 15.319 96.227 9 A_DG9:DG23_A A 9 ? A 23 ? 6 3 1 C DG 10 1_555 C DG 13 1_555 -1.178 -3.311 -0.201 3.533 10.819 94.513 10 A_DG10:DG13_A A 10 ? A 13 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DT 2 1_555 C DA 30 1_555 C DG 3 1_555 C DC 29 1_555 1.732 0.635 3.669 6.584 10.055 34.057 -0.686 -1.677 3.951 16.542 -10.831 36.056 1 AA_DT2DG3:DC29DA30_AA A 2 ? A 30 ? A 3 ? A 29 ? 1 C DG 3 1_555 C DC 29 1_555 C DA 4 1_555 C DT 28 1_555 -1.603 0.653 2.794 -15.242 -0.130 36.359 0.985 0.654 3.189 -0.199 23.213 39.325 2 AA_DG3DA4:DT28DC29_AA A 3 ? A 29 ? A 4 ? A 28 ? 1 C DA 4 1_555 C DT 28 1_555 C DC 5 1_555 C DG 27 1_555 -0.124 -0.284 3.816 -2.008 -10.908 36.871 1.174 -0.107 3.749 -16.786 3.090 38.447 3 AA_DA4DC5:DG27DT28_AA A 4 ? A 28 ? A 5 ? A 27 ? 1 C DC 5 1_555 C DG 27 1_555 C DG 6 1_555 C DC 26 1_555 0.880 -0.251 2.874 0.075 14.743 29.495 -2.623 -1.543 2.476 26.940 -0.136 32.901 4 AA_DC5DG6:DC26DG27_AA A 5 ? A 27 ? A 6 ? A 26 ? 1 C DG 6 1_555 C DC 26 1_555 C DT 7 1_555 C DG 25 1_555 1.713 0.252 3.488 3.976 4.400 38.409 -0.208 -2.045 3.646 6.639 -6.000 38.847 5 AA_DG6DT7:DG25DC26_AA A 6 ? A 26 ? A 7 ? A 25 ? 1 C DT 7 1_555 C DG 25 1_555 C DA 8 1_555 C DT 17 1_555 -1.508 1.159 3.007 6.676 7.813 78.250 0.716 1.356 2.978 6.166 -5.269 78.814 6 AA_DT7DA8:DT17DG25_AA A 7 ? A 25 ? A 8 ? A 17 ? 1 C DA 8 1_555 C DT 17 1_555 C DG 24 1_555 C DG 16 1_555 0.896 3.663 1.239 168.595 34.507 116.280 1.743 -0.010 1.903 17.373 -84.880 175.827 7 AA_DA8DG24:DG16DT17_AA A 8 ? A 17 ? A 24 ? A 16 ? 1 C DG 24 1_555 C DG 16 1_555 C DG 9 1_555 C DG 23 1_555 0.374 2.174 -3.233 16.766 -2.455 96.626 1.403 -0.524 -3.198 -1.634 -11.162 97.735 8 AA_DG24DG9:DG23DG16_AA A 24 ? A 16 ? A 9 ? A 23 ? 1 C DG 9 1_555 C DG 23 1_555 C DG 10 1_555 C DG 13 1_555 -0.542 -3.202 0.480 166.026 -43.571 -70.841 1.638 -0.141 0.044 22.230 84.708 -173.195 9 AA_DG9DG10:DG13DG23_AA A 9 ? A 23 ? A 10 ? A 13 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4DII _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5CMX _atom_sites.fract_transf_matrix[1][1] 0.012933 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008037 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024728 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O P S # loop_