HEADER OXIDOREDUCTASE 21-JUL-15 5CPL TITLE THE CRYSTAL STRUCTURE OF XENOBIOTIC REDUCTASE A (XENA) FROM TITLE 2 PSEUDOMONAS PUTIDA IN COMPLEX WITH A NICOTINAMIDE MIMIC (MNH2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: XENOBIOTIC REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: XENOBIOTIC REDUCTASE A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: XENA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS REDUCTASE, NICOTINAMIDE MIMIC, BIOMIMETIC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KNAUS,C.E.PAUL,C.W.LEVY,F.G.MUTTI,F.HOLLMANN,N.S.SCRUTTON REVDAT 4 10-JAN-24 5CPL 1 LINK REVDAT 3 30-AUG-17 5CPL 1 REMARK REVDAT 2 03-FEB-16 5CPL 1 JRNL REVDAT 1 20-JAN-16 5CPL 0 JRNL AUTH T.KNAUS,C.E.PAUL,C.W.LEVY,S.DE VRIES,F.G.MUTTI,F.HOLLMANN, JRNL AUTH 2 N.S.SCRUTTON JRNL TITL BETTER THAN NATURE: NICOTINAMIDE BIOMIMETICS THAT OUTPERFORM JRNL TITL 2 NATURAL COENZYMES. JRNL REF J.AM.CHEM.SOC. V. 138 1033 2016 JRNL REFN ESSN 1520-5126 JRNL PMID 26727612 JRNL DOI 10.1021/JACS.5B12252 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1977 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 98960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 4868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.3983 - 4.8772 0.99 3523 193 0.1720 0.1777 REMARK 3 2 4.8772 - 3.8715 0.99 3440 150 0.1247 0.1234 REMARK 3 3 3.8715 - 3.3822 0.99 3362 176 0.1310 0.1432 REMARK 3 4 3.3822 - 3.0730 0.99 3338 167 0.1376 0.1521 REMARK 3 5 3.0730 - 2.8528 0.99 3322 163 0.1427 0.1669 REMARK 3 6 2.8528 - 2.6846 0.99 3297 160 0.1294 0.1536 REMARK 3 7 2.6846 - 2.5501 0.99 3306 173 0.1194 0.1541 REMARK 3 8 2.5501 - 2.4391 0.98 3274 145 0.1198 0.1344 REMARK 3 9 2.4391 - 2.3452 0.98 3294 161 0.1172 0.1634 REMARK 3 10 2.3452 - 2.2643 0.98 3225 161 0.1123 0.1663 REMARK 3 11 2.2643 - 2.1935 0.97 3225 182 0.1192 0.1444 REMARK 3 12 2.1935 - 2.1308 0.97 3224 161 0.1200 0.1673 REMARK 3 13 2.1308 - 2.0747 0.97 3239 142 0.1198 0.1380 REMARK 3 14 2.0747 - 2.0241 0.97 3129 187 0.1250 0.1634 REMARK 3 15 2.0241 - 1.9781 0.97 3232 166 0.1288 0.1547 REMARK 3 16 1.9781 - 1.9360 0.96 3105 198 0.1302 0.1703 REMARK 3 17 1.9360 - 1.8972 0.96 3143 165 0.1278 0.1669 REMARK 3 18 1.8972 - 1.8614 0.95 3092 180 0.1315 0.1557 REMARK 3 19 1.8614 - 1.8282 0.94 3093 174 0.1307 0.1765 REMARK 3 20 1.8282 - 1.7972 0.93 3100 159 0.1426 0.1644 REMARK 3 21 1.7972 - 1.7682 0.93 3016 148 0.1437 0.2078 REMARK 3 22 1.7682 - 1.7410 0.92 3010 162 0.1534 0.1973 REMARK 3 23 1.7410 - 1.7154 0.91 2985 147 0.1512 0.1690 REMARK 3 24 1.7154 - 1.6912 0.90 2966 159 0.1490 0.1960 REMARK 3 25 1.6912 - 1.6684 0.90 2916 155 0.1542 0.2034 REMARK 3 26 1.6684 - 1.6467 0.89 2947 151 0.1596 0.1813 REMARK 3 27 1.6467 - 1.6261 0.88 2860 147 0.1645 0.2042 REMARK 3 28 1.6261 - 1.6065 0.88 2881 155 0.1779 0.2055 REMARK 3 29 1.6065 - 1.5878 0.86 2836 145 0.1839 0.2056 REMARK 3 30 1.5878 - 1.5700 0.82 2712 136 0.2078 0.2184 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5892 REMARK 3 ANGLE : 1.291 8042 REMARK 3 CHIRALITY : 0.052 840 REMARK 3 PLANARITY : 0.007 1057 REMARK 3 DIHEDRAL : 13.989 2104 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CPL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102314 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 47.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06790 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.66900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2H90 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 0.1 M SODIUM REMARK 280 CACODYLATE BUFFER PH 6.5, 40% V/V PEG 300 (JCSG+ HT96 A10 REMARK 280 MOLECULAR DIMENSIONS), PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.91000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.94000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.91000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.94000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 361 REMARK 465 TYR A 362 REMARK 465 ARG A 363 REMARK 465 ARG A 364 REMARK 465 PRO A 365 REMARK 465 HIS A 366 REMARK 465 HIS A 367 REMARK 465 HIS A 368 REMARK 465 HIS A 369 REMARK 465 HIS A 370 REMARK 465 HIS A 371 REMARK 465 MET B 1 REMARK 465 ARG B 361 REMARK 465 TYR B 362 REMARK 465 ARG B 363 REMARK 465 ARG B 364 REMARK 465 PRO B 365 REMARK 465 HIS B 366 REMARK 465 HIS B 367 REMARK 465 HIS B 368 REMARK 465 HIS B 369 REMARK 465 HIS B 370 REMARK 465 HIS B 371 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 41 HH TYR B 355 1.10 REMARK 500 HE22 GLN A 315 O HOH A 504 1.57 REMARK 500 O HOH B 512 O HOH B 752 1.86 REMARK 500 OE2 GLU B 128 O HOH B 501 1.88 REMARK 500 O HOH A 814 O HOH A 843 1.89 REMARK 500 O HOH B 720 O HOH B 773 1.90 REMARK 500 O HOH B 821 O HOH B 847 1.91 REMARK 500 OE2 GLU B 128 O HOH B 502 1.94 REMARK 500 O HOH B 504 O HOH B 808 1.96 REMARK 500 O HOH A 710 O HOH A 722 1.97 REMARK 500 O HOH B 516 O HOH B 764 1.98 REMARK 500 O HOH B 833 O HOH B 871 2.00 REMARK 500 OE1 GLU A 246 O HOH A 501 2.01 REMARK 500 O HOH B 664 O HOH B 831 2.01 REMARK 500 O HOH B 797 O HOH B 811 2.03 REMARK 500 O HOH B 849 O HOH B 865 2.04 REMARK 500 O HOH A 843 O HOH B 846 2.05 REMARK 500 O HOH B 665 O HOH B 868 2.07 REMARK 500 O HOH A 825 O HOH A 882 2.07 REMARK 500 O HOH A 785 O HOH A 839 2.08 REMARK 500 O HOH A 803 O HOH A 839 2.09 REMARK 500 O HOH A 787 O HOH A 832 2.09 REMARK 500 O HOH A 780 O HOH A 794 2.09 REMARK 500 O HOH A 880 O HOH A 887 2.10 REMARK 500 O HOH A 586 O HOH A 822 2.11 REMARK 500 O HOH A 738 O HOH A 808 2.13 REMARK 500 O HOH B 788 O HOH B 819 2.14 REMARK 500 O HOH A 547 O HOH A 861 2.14 REMARK 500 O HOH A 506 O HOH A 703 2.15 REMARK 500 O HOH B 766 O HOH B 796 2.16 REMARK 500 OE1 GLU A 224 O HOH A 502 2.16 REMARK 500 O HOH B 789 O HOH B 794 2.16 REMARK 500 O HOH A 517 O HOH A 703 2.16 REMARK 500 OD1 ASP B 159 O HOH B 503 2.17 REMARK 500 OE1 GLU B 360 O HOH B 504 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 655 O HOH B 715 3444 2.13 REMARK 500 O HOH A 888 O HOH B 865 3444 2.18 REMARK 500 O HOH A 506 O HOH B 783 3444 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 302 CB TRP A 302 CG 0.157 REMARK 500 TRP B 302 CB TRP B 302 CG 0.241 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 11 -132.89 49.01 REMARK 500 GLU A 56 157.59 -47.45 REMARK 500 ALA A 139 -123.78 49.11 REMARK 500 TYR A 183 -166.15 -78.12 REMARK 500 TRP A 302 79.70 78.77 REMARK 500 TRP A 302 74.95 87.82 REMARK 500 LYS B 11 -130.81 47.63 REMARK 500 GLU B 56 158.13 -44.53 REMARK 500 ILE B 73 38.96 -140.48 REMARK 500 ALA B 139 -123.22 47.16 REMARK 500 ASP B 198 -158.23 -93.19 REMARK 500 TRP B 302 92.46 94.13 REMARK 500 TRP B 302 89.77 100.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TRP A 302 12.78 REMARK 500 TRP A 302 12.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 897 DISTANCE = 6.14 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 716 O REMARK 620 2 GLU B 128 OE1 108.9 REMARK 620 3 GLU B 128 OE2 74.6 53.4 REMARK 620 4 VAL B 144 O 75.4 97.7 126.2 REMARK 620 5 HOH B 501 O 85.7 87.8 45.3 161.1 REMARK 620 6 HOH B 508 O 152.9 57.5 106.6 83.0 114.8 REMARK 620 7 HOH B 812 O 109.6 141.1 134.7 97.2 89.5 89.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 536 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FNR A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 536 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FNR B 403 DBREF 5CPL A 1 363 UNP Q9R9V9 Q9R9V9_PSEPU 1 363 DBREF 5CPL B 1 363 UNP Q9R9V9 Q9R9V9_PSEPU 1 363 SEQADV 5CPL ARG A 364 UNP Q9R9V9 EXPRESSION TAG SEQADV 5CPL PRO A 365 UNP Q9R9V9 EXPRESSION TAG SEQADV 5CPL HIS A 366 UNP Q9R9V9 EXPRESSION TAG SEQADV 5CPL HIS A 367 UNP Q9R9V9 EXPRESSION TAG SEQADV 5CPL HIS A 368 UNP Q9R9V9 EXPRESSION TAG SEQADV 5CPL HIS A 369 UNP Q9R9V9 EXPRESSION TAG SEQADV 5CPL HIS A 370 UNP Q9R9V9 EXPRESSION TAG SEQADV 5CPL HIS A 371 UNP Q9R9V9 EXPRESSION TAG SEQADV 5CPL ARG B 364 UNP Q9R9V9 EXPRESSION TAG SEQADV 5CPL PRO B 365 UNP Q9R9V9 EXPRESSION TAG SEQADV 5CPL HIS B 366 UNP Q9R9V9 EXPRESSION TAG SEQADV 5CPL HIS B 367 UNP Q9R9V9 EXPRESSION TAG SEQADV 5CPL HIS B 368 UNP Q9R9V9 EXPRESSION TAG SEQADV 5CPL HIS B 369 UNP Q9R9V9 EXPRESSION TAG SEQADV 5CPL HIS B 370 UNP Q9R9V9 EXPRESSION TAG SEQADV 5CPL HIS B 371 UNP Q9R9V9 EXPRESSION TAG SEQRES 1 A 371 MET SER ALA LEU PHE GLU PRO TYR THR LEU LYS ASP VAL SEQRES 2 A 371 THR LEU ARG ASN ARG ILE ALA ILE PRO PRO MET CYS GLN SEQRES 3 A 371 TYR MET ALA GLU ASP GLY LEU ILE ASN ASP TRP HIS GLN SEQRES 4 A 371 VAL HIS TYR ALA SER MET ALA ARG GLY GLY ALA GLY LEU SEQRES 5 A 371 LEU VAL VAL GLU ALA THR ALA VAL ALA PRO GLU GLY ARG SEQRES 6 A 371 ILE THR PRO GLY CYS ALA GLY ILE TRP SER ASP ALA HIS SEQRES 7 A 371 ALA GLN ALA PHE VAL PRO VAL VAL GLN ALA ILE LYS ALA SEQRES 8 A 371 ALA GLY SER VAL PRO GLY ILE GLN ILE ALA HIS ALA GLY SEQRES 9 A 371 ARG LYS ALA SER ALA ASN ARG PRO TRP GLU GLY ASP ASP SEQRES 10 A 371 HIS ILE GLY ALA ASP ASP ALA ARG GLY TRP GLU THR ILE SEQRES 11 A 371 ALA PRO SER ALA ILE ALA PHE GLY ALA HIS LEU PRO ASN SEQRES 12 A 371 VAL PRO ARG ALA MET THR LEU ASP ASP ILE ALA ARG VAL SEQRES 13 A 371 LYS GLN ASP PHE VAL ASP ALA ALA ARG ARG ALA ARG ASP SEQRES 14 A 371 ALA GLY PHE GLU TRP ILE GLU LEU HIS PHE ALA HIS GLY SEQRES 15 A 371 TYR LEU GLY GLN SER PHE PHE SER GLU HIS SER ASN LYS SEQRES 16 A 371 ARG THR ASP ALA TYR GLY GLY SER PHE ASP ASN ARG SER SEQRES 17 A 371 ARG PHE LEU LEU GLU THR LEU ALA ALA VAL ARG GLU VAL SEQRES 18 A 371 TRP PRO GLU ASN LEU PRO LEU THR ALA ARG PHE GLY VAL SEQRES 19 A 371 LEU GLU TYR ASP GLY ARG ASP GLU GLN THR LEU GLU GLU SEQRES 20 A 371 SER ILE GLU LEU ALA ARG ARG PHE LYS ALA GLY GLY LEU SEQRES 21 A 371 ASP LEU LEU SER VAL SER VAL GLY PHE THR ILE PRO GLU SEQRES 22 A 371 THR ASN ILE PRO TRP GLY PRO ALA PHE MET GLY PRO ILE SEQRES 23 A 371 ALA GLU ARG VAL ARG ARG GLU ALA LYS LEU PRO VAL THR SEQRES 24 A 371 SER ALA TRP GLY PHE GLY THR PRO GLN LEU ALA GLU ALA SEQRES 25 A 371 ALA LEU GLN ALA ASN GLN LEU ASP LEU VAL SER VAL GLY SEQRES 26 A 371 ARG ALA HIS LEU ALA ASP PRO HIS TRP ALA TYR PHE ALA SEQRES 27 A 371 ALA LYS GLU LEU GLY VAL GLU LYS ALA SER TRP THR LEU SEQRES 28 A 371 PRO ALA PRO TYR ALA HIS TRP LEU GLU ARG TYR ARG ARG SEQRES 29 A 371 PRO HIS HIS HIS HIS HIS HIS SEQRES 1 B 371 MET SER ALA LEU PHE GLU PRO TYR THR LEU LYS ASP VAL SEQRES 2 B 371 THR LEU ARG ASN ARG ILE ALA ILE PRO PRO MET CYS GLN SEQRES 3 B 371 TYR MET ALA GLU ASP GLY LEU ILE ASN ASP TRP HIS GLN SEQRES 4 B 371 VAL HIS TYR ALA SER MET ALA ARG GLY GLY ALA GLY LEU SEQRES 5 B 371 LEU VAL VAL GLU ALA THR ALA VAL ALA PRO GLU GLY ARG SEQRES 6 B 371 ILE THR PRO GLY CYS ALA GLY ILE TRP SER ASP ALA HIS SEQRES 7 B 371 ALA GLN ALA PHE VAL PRO VAL VAL GLN ALA ILE LYS ALA SEQRES 8 B 371 ALA GLY SER VAL PRO GLY ILE GLN ILE ALA HIS ALA GLY SEQRES 9 B 371 ARG LYS ALA SER ALA ASN ARG PRO TRP GLU GLY ASP ASP SEQRES 10 B 371 HIS ILE GLY ALA ASP ASP ALA ARG GLY TRP GLU THR ILE SEQRES 11 B 371 ALA PRO SER ALA ILE ALA PHE GLY ALA HIS LEU PRO ASN SEQRES 12 B 371 VAL PRO ARG ALA MET THR LEU ASP ASP ILE ALA ARG VAL SEQRES 13 B 371 LYS GLN ASP PHE VAL ASP ALA ALA ARG ARG ALA ARG ASP SEQRES 14 B 371 ALA GLY PHE GLU TRP ILE GLU LEU HIS PHE ALA HIS GLY SEQRES 15 B 371 TYR LEU GLY GLN SER PHE PHE SER GLU HIS SER ASN LYS SEQRES 16 B 371 ARG THR ASP ALA TYR GLY GLY SER PHE ASP ASN ARG SER SEQRES 17 B 371 ARG PHE LEU LEU GLU THR LEU ALA ALA VAL ARG GLU VAL SEQRES 18 B 371 TRP PRO GLU ASN LEU PRO LEU THR ALA ARG PHE GLY VAL SEQRES 19 B 371 LEU GLU TYR ASP GLY ARG ASP GLU GLN THR LEU GLU GLU SEQRES 20 B 371 SER ILE GLU LEU ALA ARG ARG PHE LYS ALA GLY GLY LEU SEQRES 21 B 371 ASP LEU LEU SER VAL SER VAL GLY PHE THR ILE PRO GLU SEQRES 22 B 371 THR ASN ILE PRO TRP GLY PRO ALA PHE MET GLY PRO ILE SEQRES 23 B 371 ALA GLU ARG VAL ARG ARG GLU ALA LYS LEU PRO VAL THR SEQRES 24 B 371 SER ALA TRP GLY PHE GLY THR PRO GLN LEU ALA GLU ALA SEQRES 25 B 371 ALA LEU GLN ALA ASN GLN LEU ASP LEU VAL SER VAL GLY SEQRES 26 B 371 ARG ALA HIS LEU ALA ASP PRO HIS TRP ALA TYR PHE ALA SEQRES 27 B 371 ALA LYS GLU LEU GLY VAL GLU LYS ALA SER TRP THR LEU SEQRES 28 B 371 PRO ALA PRO TYR ALA HIS TRP LEU GLU ARG TYR ARG ARG SEQRES 29 B 371 PRO HIS HIS HIS HIS HIS HIS HET 536 A 401 32 HET FNR A 402 52 HET 536 B 401 32 HET CA B 402 1 HET FNR B 403 52 HETNAM 536 1-BENZYL-1,4,5,6-TETRAHYDROPYRIDINE-3-CARBOXAMIDE HETNAM FNR 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H- HETNAM 2 FNR BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D- HETNAM 3 FNR RIBITOL HETNAM CA CALCIUM ION HETSYN FNR TWO ELECTRON REDUCED FLAVIN MONONUCLEOTIDE FORMUL 3 536 2(C13 H16 N2 O) FORMUL 4 FNR 2(C17 H23 N4 O9 P) FORMUL 6 CA CA 2+ FORMUL 8 HOH *797(H2 O) HELIX 1 AA1 SER A 2 GLU A 6 5 5 HELIX 2 AA2 ASN A 35 GLY A 48 1 14 HELIX 3 AA3 ALA A 61 ARG A 65 5 5 HELIX 4 AA4 SER A 75 ALA A 92 1 18 HELIX 5 AA5 ALA A 103 ALA A 107 5 5 HELIX 6 AA6 ARG A 111 GLY A 115 5 5 HELIX 7 AA7 THR A 149 GLY A 171 1 23 HELIX 8 AA8 TYR A 183 SER A 190 1 8 HELIX 9 AA9 SER A 203 GLU A 220 1 18 HELIX 10 AB1 ARG A 240 GLY A 258 1 19 HELIX 11 AB2 MET A 283 LYS A 295 1 13 HELIX 12 AB3 THR A 306 ALA A 316 1 11 HELIX 13 AB4 GLY A 325 ASP A 331 1 7 HELIX 14 AB5 HIS A 333 LEU A 342 1 10 HELIX 15 AB6 LYS A 346 LEU A 351 5 6 HELIX 16 AB7 PRO A 352 GLU A 360 1 9 HELIX 17 AB8 SER B 2 GLU B 6 5 5 HELIX 18 AB9 ASN B 35 GLY B 48 1 14 HELIX 19 AC1 ALA B 61 ARG B 65 5 5 HELIX 20 AC2 SER B 75 ALA B 92 1 18 HELIX 21 AC3 ALA B 103 ALA B 107 5 5 HELIX 22 AC4 ARG B 111 GLY B 115 5 5 HELIX 23 AC5 THR B 149 GLY B 171 1 23 HELIX 24 AC6 TYR B 183 SER B 190 1 8 HELIX 25 AC7 SER B 203 GLU B 220 1 18 HELIX 26 AC8 ARG B 240 GLY B 258 1 19 HELIX 27 AC9 MET B 283 LYS B 295 1 13 HELIX 28 AD1 THR B 306 ALA B 316 1 11 HELIX 29 AD2 GLY B 325 ASP B 331 1 7 HELIX 30 AD3 HIS B 333 LEU B 342 1 10 HELIX 31 AD4 LYS B 346 LEU B 351 5 6 HELIX 32 AD5 PRO B 352 GLU B 360 1 9 SHEET 1 AA1 2 TYR A 8 LEU A 10 0 SHEET 2 AA1 2 VAL A 13 LEU A 15 -1 O LEU A 15 N TYR A 8 SHEET 1 AA2 9 ILE A 19 ILE A 21 0 SHEET 2 AA2 9 LEU A 52 ALA A 59 1 O VAL A 54 N ILE A 21 SHEET 3 AA2 9 VAL A 95 ALA A 101 1 O GLY A 97 N LEU A 53 SHEET 4 AA2 9 TRP A 174 PHE A 179 1 O GLU A 176 N ILE A 98 SHEET 5 AA2 9 LEU A 228 GLY A 233 1 O ARG A 231 N LEU A 177 SHEET 6 AA2 9 LEU A 262 SER A 266 1 O SER A 264 N ALA A 230 SHEET 7 AA2 9 VAL A 298 SER A 300 1 O THR A 299 N VAL A 265 SHEET 8 AA2 9 LEU A 321 SER A 323 1 O SER A 323 N SER A 300 SHEET 9 AA2 9 ILE A 19 ILE A 21 1 N ALA A 20 O VAL A 322 SHEET 1 AA3 2 ILE A 130 ALA A 131 0 SHEET 2 AA3 2 ARG A 146 ALA A 147 1 O ARG A 146 N ALA A 131 SHEET 1 AA4 2 TYR B 8 LEU B 10 0 SHEET 2 AA4 2 VAL B 13 LEU B 15 -1 O LEU B 15 N TYR B 8 SHEET 1 AA5 9 ILE B 19 ILE B 21 0 SHEET 2 AA5 9 LEU B 52 ALA B 59 1 O VAL B 54 N ILE B 21 SHEET 3 AA5 9 VAL B 95 ALA B 101 1 O GLY B 97 N LEU B 53 SHEET 4 AA5 9 TRP B 174 PHE B 179 1 O HIS B 178 N ILE B 100 SHEET 5 AA5 9 LEU B 228 GLY B 233 1 O ARG B 231 N LEU B 177 SHEET 6 AA5 9 LEU B 262 SER B 266 1 O SER B 264 N ALA B 230 SHEET 7 AA5 9 VAL B 298 SER B 300 1 O THR B 299 N VAL B 265 SHEET 8 AA5 9 LEU B 321 SER B 323 1 O SER B 323 N SER B 300 SHEET 9 AA5 9 ILE B 19 ILE B 21 1 N ALA B 20 O VAL B 322 SHEET 1 AA6 2 ILE B 130 ALA B 131 0 SHEET 2 AA6 2 ARG B 146 ALA B 147 1 O ARG B 146 N ALA B 131 LINK O HOH A 716 CA CA B 402 3554 1555 2.48 LINK OE1AGLU B 128 CA CA B 402 1555 1555 2.29 LINK OE2AGLU B 128 CA CA B 402 1555 1555 2.53 LINK O VAL B 144 CA CA B 402 1555 1555 2.26 LINK CA CA B 402 O HOH B 501 1555 1555 2.33 LINK CA CA B 402 O HOH B 508 1555 1555 2.55 LINK CA CA B 402 O HOH B 812 1555 1555 2.42 SITE 1 AC1 9 CYS A 25 TYR A 27 ILE A 66 HIS A 178 SITE 2 AC1 9 HIS A 181 TYR A 183 TRP A 302 FNR A 402 SITE 3 AC1 9 TRP B 358 SITE 1 AC2 19 PRO A 22 PRO A 23 MET A 24 CYS A 25 SITE 2 AC2 19 ALA A 57 GLN A 99 HIS A 178 HIS A 181 SITE 3 AC2 19 ARG A 231 ALA A 301 TRP A 302 GLY A 303 SITE 4 AC2 19 GLY A 325 ARG A 326 536 A 401 HOH A 574 SITE 5 AC2 19 HOH A 617 HOH A 650 TRP B 358 SITE 1 AC3 9 TRP A 358 CYS B 25 TYR B 27 ILE B 66 SITE 2 AC3 9 HIS B 178 HIS B 181 TYR B 183 TRP B 302 SITE 3 AC3 9 FNR B 403 SITE 1 AC4 6 HOH A 716 GLU B 128 VAL B 144 HOH B 501 SITE 2 AC4 6 HOH B 508 HOH B 812 SITE 1 AC5 19 TRP A 358 PRO B 22 PRO B 23 MET B 24 SITE 2 AC5 19 CYS B 25 ALA B 57 GLN B 99 HIS B 178 SITE 3 AC5 19 HIS B 181 ARG B 231 ALA B 301 TRP B 302 SITE 4 AC5 19 GLY B 303 GLY B 325 ARG B 326 536 B 401 SITE 5 AC5 19 HOH B 569 HOH B 600 HOH B 624 CRYST1 56.800 83.820 155.880 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017606 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006415 0.00000