HEADER TRANSFERASE 21-JUL-15 5CQ7 TITLE CRYSTAL STRUCTURE OF THE BROMODOMAIN OF BROMODOMAIN ADJACENT TO ZINC TITLE 2 FINGER DOMAIN PROTEIN 2B (BAZ2B) IN COMPLEX WITH N,N- TITLE 3 DIMETHYLQUINOXALINE-6-CARBOXAMIDE (SGC - DIAMOND I04-1 FRAGMENT TITLE 4 SCREENING) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BROMODOMAIN; COMPND 5 SYNONYM: HWALP4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BAZ2B, KIAA1476; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIC28 KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BRADLEY,N.PEARCE,T.KROJER,J.NG,R.TALON,M.VOLLMAR,B.JOSE,F.VON AUTHOR 2 DELFT,C.BOUNTRA,C.H.ARROWSMITH,A.EDWARDS,S.KNAPP,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 2 08-MAY-24 5CQ7 1 REMARK REVDAT 1 09-SEP-15 5CQ7 0 JRNL AUTH A.BRADLEY,N.PEARCE,T.KROJER,J.NG,R.TALON,M.VOLLMAR,B.JOSE, JRNL AUTH 2 F.VON DELFT,C.BOUNTRA,C.H.ARROWSMITH,A.EDWARDS,S.KNAPP, JRNL AUTH 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF THE SECOND BROMODOMAIN OF BROMODOMAIN JRNL TITL 2 ADJANCENT TO ZINC FINGER DOMAIN PROTEIN 2B (BAZ2B) IN JRNL TITL 3 COMPLEX WITH N,N-DIMETHYLQUINOXALINE-6-CARBOXAMIDE (SGC - JRNL TITL 4 DIAMOND I04-1 FRAGMENT SCREENING) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 19853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CQ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37326 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 42.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.59500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG6000 , 10% ETHYLENE GLYCOL , REMARK 280 0.1M MES PH 6.0 , 0.1M CALCIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.94000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.94000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.42500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.28000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.42500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.28000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.94000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.42500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.28000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.94000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.42500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.28000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1863 CG CD CE NZ REMARK 470 LYS A1868 CE NZ REMARK 470 GLU A1927 CD OE1 OE2 REMARK 470 LYS A1970 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 1945 O HOH A 2101 2.01 REMARK 500 NZ LYS A 1907 O HOH A 2103 2.17 REMARK 500 O HOH A 2193 O HOH A 2204 2.19 REMARK 500 O LYS A 1970 O HOH A 2104 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A1860 CD LYS A1860 CE 0.259 REMARK 500 LYS A1861 CG LYS A1861 CD 0.227 REMARK 500 LYS A1861 CD LYS A1861 CE 0.220 REMARK 500 LYS A1861 CE LYS A1861 NZ 0.204 REMARK 500 ASP A1866 C ASP A1866 O 0.114 REMARK 500 SER A1867 CB SER A1867 OG 0.081 REMARK 500 ALA A1871 CA ALA A1871 CB 0.215 REMARK 500 MET A1875 CG MET A1875 SD 0.228 REMARK 500 GLU A1879 CB GLU A1879 CG 0.126 REMARK 500 GLU A1879 CD GLU A1879 OE2 0.069 REMARK 500 GLU A1884 CG GLU A1884 CD 0.214 REMARK 500 ASP A1885 CB ASP A1885 CG 0.195 REMARK 500 PRO A1899 CA PRO A1899 CB 0.136 REMARK 500 TYR A1901 CZ TYR A1901 OH 0.114 REMARK 500 TYR A1901 CZ TYR A1901 CE2 -0.080 REMARK 500 TYR A1901 CE2 TYR A1901 CD2 0.148 REMARK 500 VAL A1904 CB VAL A1904 CG2 0.163 REMARK 500 ILE A1905 CB ILE A1905 CG2 0.192 REMARK 500 LYS A1906 CD LYS A1906 CE 0.205 REMARK 500 LYS A1907 CD LYS A1907 CE 0.260 REMARK 500 LYS A1907 CE LYS A1907 NZ 0.289 REMARK 500 GLU A1916 CG GLU A1916 CD 0.105 REMARK 500 GLU A1916 CD GLU A1916 OE2 0.087 REMARK 500 GLY A1921 CA GLY A1921 C -0.141 REMARK 500 TYR A1923 CB TYR A1923 CG 0.142 REMARK 500 TYR A1923 CG TYR A1923 CD2 -0.113 REMARK 500 LEU A1926 CA LEU A1926 CB 0.297 REMARK 500 GLU A1927 CB GLU A1927 CG -0.147 REMARK 500 VAL A1936 CB VAL A1936 CG1 0.215 REMARK 500 VAL A1936 CB VAL A1936 CG2 0.135 REMARK 500 PHE A1937 CE1 PHE A1937 CZ 0.122 REMARK 500 GLU A1941 CB GLU A1941 CG -0.182 REMARK 500 GLU A1941 CD GLU A1941 OE2 0.082 REMARK 500 GLU A1945 CB GLU A1945 CG 0.189 REMARK 500 GLU A1945 CG GLU A1945 CD 0.115 REMARK 500 GLU A1945 CD GLU A1945 OE2 0.144 REMARK 500 GLU A1945 CD GLU A1945 OE2 -0.074 REMARK 500 ASP A1949 CB ASP A1949 CG 0.136 REMARK 500 LYS A1959 CD LYS A1959 CE 0.238 REMARK 500 TYR A1960 CB TYR A1960 CG -0.137 REMARK 500 TYR A1960 CG TYR A1960 CD1 0.162 REMARK 500 TYR A1960 CZ TYR A1960 CE2 0.125 REMARK 500 PHE A1961 CG PHE A1961 CD1 0.123 REMARK 500 PHE A1961 CD1 PHE A1961 CE1 0.186 REMARK 500 PHE A1961 CE2 PHE A1961 CD2 0.133 REMARK 500 LYS A1963 CB LYS A1963 CG 0.209 REMARK 500 LYS A1963 CD LYS A1963 CE 0.390 REMARK 500 LYS A1963 CE LYS A1963 NZ 0.424 REMARK 500 LYS A1964 CD LYS A1964 CE 0.170 REMARK 500 LYS A1964 CE LYS A1964 NZ 0.184 REMARK 500 REMARK 500 THIS ENTRY HAS 55 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A1860 CB - CG - CD ANGL. DEV. = -16.5 DEGREES REMARK 500 LYS A1860 CD - CE - NZ ANGL. DEV. = -23.5 DEGREES REMARK 500 LYS A1861 CD - CE - NZ ANGL. DEV. = -29.8 DEGREES REMARK 500 ARG A1864 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A1865 CB - CG - OD1 ANGL. DEV. = 10.4 DEGREES REMARK 500 LEU A1872 CB - CG - CD2 ANGL. DEV. = -10.6 DEGREES REMARK 500 MET A1880 CG - SD - CE ANGL. DEV. = -23.5 DEGREES REMARK 500 GLU A1881 OE1 - CD - OE2 ANGL. DEV. = -12.6 DEGREES REMARK 500 GLU A1884 OE1 - CD - OE2 ANGL. DEV. = -9.2 DEGREES REMARK 500 LEU A1891 CB - CG - CD2 ANGL. DEV. = -10.9 DEGREES REMARK 500 LEU A1897 CA - CB - CG ANGL. DEV. = -15.6 DEGREES REMARK 500 TYR A1901 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A1910 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A1915 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LEU A1918 CB - CG - CD2 ANGL. DEV. = 13.5 DEGREES REMARK 500 LEU A1926 CA - CB - CG ANGL. DEV. = -27.4 DEGREES REMARK 500 LEU A1926 CB - CG - CD1 ANGL. DEV. = -16.0 DEGREES REMARK 500 GLU A1927 CA - CB - CG ANGL. DEV. = -15.0 DEGREES REMARK 500 PHE A1929 CB - CG - CD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 VAL A1936 CG1 - CB - CG2 ANGL. DEV. = -10.1 DEGREES REMARK 500 GLU A1941 CA - CB - CG ANGL. DEV. = -13.5 DEGREES REMARK 500 GLU A1941 OE1 - CD - OE2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP A1946 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A1947 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ASP A1947 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP A1949 CB - CG - OD1 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG A1952 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 LYS A1963 CB - CG - CD ANGL. DEV. = -16.5 DEGREES REMARK 500 LYS A1963 CD - CE - NZ ANGL. DEV. = -17.9 DEGREES REMARK 500 LYS A1964 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 LYS A1964 CD - CE - NZ ANGL. DEV. = -24.7 DEGREES REMARK 500 ASP A1967 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP A1967 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A1926 -62.37 -20.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A1864 12.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 53G A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 2002 DBREF 5CQ7 A 1858 1970 UNP Q9UIF8 BAZ2B_HUMAN 1954 2066 SEQADV 5CQ7 SER A 1856 UNP Q9UIF8 EXPRESSION TAG SEQADV 5CQ7 MET A 1857 UNP Q9UIF8 EXPRESSION TAG SEQRES 1 A 115 SER MET SER VAL LYS LYS PRO LYS ARG ASP ASP SER LYS SEQRES 2 A 115 ASP LEU ALA LEU CYS SER MET ILE LEU THR GLU MET GLU SEQRES 3 A 115 THR HIS GLU ASP ALA TRP PRO PHE LEU LEU PRO VAL ASN SEQRES 4 A 115 LEU LYS LEU VAL PRO GLY TYR LYS LYS VAL ILE LYS LYS SEQRES 5 A 115 PRO MET ASP PHE SER THR ILE ARG GLU LYS LEU SER SER SEQRES 6 A 115 GLY GLN TYR PRO ASN LEU GLU THR PHE ALA LEU ASP VAL SEQRES 7 A 115 ARG LEU VAL PHE ASP ASN CYS GLU THR PHE ASN GLU ASP SEQRES 8 A 115 ASP SER ASP ILE GLY ARG ALA GLY HIS ASN MET ARG LYS SEQRES 9 A 115 TYR PHE GLU LYS LYS TRP THR ASP THR PHE LYS HET 53G A2001 15 HET EDO A2002 4 HETNAM 53G N,N-DIMETHYLQUINOXALINE-6-CARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 53G C11 H11 N3 O FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *157(H2 O) HELIX 1 AA1 LYS A 1868 HIS A 1883 1 16 HELIX 2 AA2 GLU A 1884 LEU A 1890 5 7 HELIX 3 AA3 GLY A 1900 ILE A 1905 1 6 HELIX 4 AA4 ASP A 1910 SER A 1920 1 11 HELIX 5 AA5 ASN A 1925 ASN A 1944 1 20 HELIX 6 AA6 SER A 1948 LYS A 1970 1 23 SITE 1 AC1 5 PRO A1888 VAL A1898 PRO A1899 ASN A1944 SITE 2 AC1 5 HOH A2117 SITE 1 AC2 4 MET A1875 GLU A1879 LYS A1964 THR A1968 CRYST1 82.850 96.560 57.880 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012070 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010356 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017277 0.00000