HEADER TRANSFERASE 21-JUL-15 5CQB TITLE CRYSTAL STRUCTURE OF E. COLI UNDECAPRENYL PYROPHOSPHATE SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE SYNTHASE ((2E,6E)- COMPND 3 FARNESYL-DIPHOSPHATE SPECIFIC); COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: DITRANS,POLYCIS-UNDECAPRENYLCISTRANSFERASE,UNDECAPRENYL COMPND 6 DIPHOSPHATE SYNTHASE,UDS,UNDECAPRENYL PYROPHOSPHATE SYNTHASE,UPP COMPND 7 SYNTHASE; COMPND 8 EC: 2.5.1.31; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: ISPU, RTH, UPPS, YAES, B0174, JW0169; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, CELL WALL, WALL TEICHOIC ACID, ANTIBACTERIAL EXPDTA X-RAY DIFFRACTION AUTHOR L.J.WORRALL,D.G.CONRADY,N.C.STRYNADKA REVDAT 5 06-MAR-24 5CQB 1 REMARK REVDAT 4 15-NOV-17 5CQB 1 SOURCE JRNL REMARK REVDAT 3 09-SEP-15 5CQB 1 JRNL REVDAT 2 02-SEP-15 5CQB 1 JRNL REVDAT 1 19-AUG-15 5CQB 0 JRNL AUTH M.A.FARHA,T.L.CZARNY,C.L.MYERS,L.J.WORRALL,S.FRENCH, JRNL AUTH 2 D.G.CONRADY,Y.WANG,E.OLDFIELD,N.C.STRYNADKA,E.D.BROWN JRNL TITL ANTAGONISM SCREEN FOR INHIBITORS OF BACTERIAL CELL WALL JRNL TITL 2 BIOGENESIS UNCOVERS AN INHIBITOR OF UNDECAPRENYL DIPHOSPHATE JRNL TITL 3 SYNTHASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 11048 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26283394 JRNL DOI 10.1073/PNAS.1511751112 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2887 - 4.5749 1.00 2765 177 0.1806 0.2162 REMARK 3 2 4.5749 - 3.6317 1.00 2665 163 0.1589 0.2166 REMARK 3 3 3.6317 - 3.1727 1.00 2658 122 0.1786 0.2393 REMARK 3 4 3.1727 - 2.8827 1.00 2660 111 0.2082 0.3430 REMARK 3 5 2.8827 - 2.6761 1.00 2631 115 0.2062 0.2325 REMARK 3 6 2.6761 - 2.5183 1.00 2613 120 0.2143 0.2722 REMARK 3 7 2.5183 - 2.3922 1.00 2634 133 0.2219 0.2729 REMARK 3 8 2.3922 - 2.2881 1.00 2588 135 0.2399 0.2769 REMARK 3 9 2.2881 - 2.2000 1.00 2585 142 0.2561 0.3231 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3380 REMARK 3 ANGLE : 1.031 4563 REMARK 3 CHIRALITY : 0.042 490 REMARK 3 PLANARITY : 0.004 601 REMARK 3 DIHEDRAL : 14.161 1226 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.8632 66.0558 107.6144 REMARK 3 T TENSOR REMARK 3 T11: 0.2869 T22: 0.2495 REMARK 3 T33: 0.2413 T12: -0.0002 REMARK 3 T13: -0.0452 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.3628 L22: 0.1409 REMARK 3 L33: 0.4423 L12: -0.1845 REMARK 3 L13: -0.5535 L23: -0.2145 REMARK 3 S TENSOR REMARK 3 S11: -0.0481 S12: 0.2058 S13: -0.0793 REMARK 3 S21: 0.0762 S22: -0.0983 S23: 0.0221 REMARK 3 S31: 0.1293 S32: -0.0540 S33: -0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.1998 62.3130 116.4337 REMARK 3 T TENSOR REMARK 3 T11: 0.2899 T22: 0.4074 REMARK 3 T33: 0.3701 T12: -0.0483 REMARK 3 T13: 0.0070 T23: -0.0310 REMARK 3 L TENSOR REMARK 3 L11: 0.2497 L22: 0.3779 REMARK 3 L33: 0.3815 L12: 0.1751 REMARK 3 L13: 0.2524 L23: -0.1252 REMARK 3 S TENSOR REMARK 3 S11: 0.0904 S12: -0.1657 S13: 0.1402 REMARK 3 S21: 0.0719 S22: -0.2040 S23: 0.2972 REMARK 3 S31: 0.1742 S32: -0.6208 S33: -0.0008 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.2572 64.6804 125.8751 REMARK 3 T TENSOR REMARK 3 T11: 0.2305 T22: 0.2193 REMARK 3 T33: 0.2644 T12: -0.0274 REMARK 3 T13: 0.0187 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.6860 L22: 1.0312 REMARK 3 L33: 0.7647 L12: 0.0285 REMARK 3 L13: 0.2225 L23: -0.0710 REMARK 3 S TENSOR REMARK 3 S11: 0.0316 S12: -0.0631 S13: -0.0746 REMARK 3 S21: -0.0064 S22: -0.0731 S23: 0.1157 REMARK 3 S31: 0.1830 S32: -0.0499 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.4156 73.7095 132.5228 REMARK 3 T TENSOR REMARK 3 T11: 0.1889 T22: 0.2476 REMARK 3 T33: 0.2327 T12: -0.0012 REMARK 3 T13: 0.0205 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.3577 L22: 0.3973 REMARK 3 L33: 0.8206 L12: 0.0314 REMARK 3 L13: -0.0145 L23: 0.2951 REMARK 3 S TENSOR REMARK 3 S11: 0.0068 S12: -0.1151 S13: -0.0857 REMARK 3 S21: -0.1690 S22: 0.1026 S23: 0.0105 REMARK 3 S31: -0.0849 S32: 0.2180 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 87.9546 78.1560 146.7335 REMARK 3 T TENSOR REMARK 3 T11: 0.4512 T22: 0.5360 REMARK 3 T33: 0.4639 T12: 0.1732 REMARK 3 T13: 0.0376 T23: -0.0539 REMARK 3 L TENSOR REMARK 3 L11: 0.1004 L22: 0.0217 REMARK 3 L33: 0.0280 L12: -0.0419 REMARK 3 L13: 0.0247 L23: -0.0096 REMARK 3 S TENSOR REMARK 3 S11: -0.2432 S12: -0.2364 S13: -0.2756 REMARK 3 S21: -0.3796 S22: 0.0137 S23: -0.5441 REMARK 3 S31: 0.5651 S32: 0.9527 S33: -0.0088 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 103 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.8952 75.6153 137.6673 REMARK 3 T TENSOR REMARK 3 T11: 0.2001 T22: 0.2024 REMARK 3 T33: 0.1845 T12: -0.0159 REMARK 3 T13: 0.0351 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.6912 L22: 1.5977 REMARK 3 L33: 0.6091 L12: 0.4393 REMARK 3 L13: 0.8036 L23: 0.5468 REMARK 3 S TENSOR REMARK 3 S11: 0.0886 S12: -0.1047 S13: 0.0722 REMARK 3 S21: 0.1161 S22: -0.1026 S23: 0.0619 REMARK 3 S31: -0.0280 S32: -0.0468 S33: -0.0014 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212030. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XIA2, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25073 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 46.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 1.14200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M LITHIUM SULFATE, 0.1 M ADA 6.5, REMARK 280 12 % W/V PEG 4K, 20 % GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.49050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.70600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.11450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.70600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.49050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.11450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 THR A 6 REMARK 465 GLN A 7 REMARK 465 PRO A 8 REMARK 465 LEU A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 LYS A 12 REMARK 465 SER A 71 REMARK 465 SER A 72 REMARK 465 GLU A 73 REMARK 465 ASN A 74 REMARK 465 TRP A 75 REMARK 465 ASN A 76 REMARK 465 ARG A 77 REMARK 465 PRO A 78 REMARK 465 ALA A 79 REMARK 465 GLN A 80 REMARK 465 GLU A 81 REMARK 465 VAL A 82 REMARK 465 SER A 83 REMARK 465 ALA A 84 REMARK 465 LEU A 85 REMARK 465 MET A 86 REMARK 465 GLU A 87 REMARK 465 LEU A 88 REMARK 465 GLU A 240 REMARK 465 ARG A 241 REMARK 465 ARG A 242 REMARK 465 PHE A 243 REMARK 465 GLY A 244 REMARK 465 GLY A 245 REMARK 465 THR A 246 REMARK 465 GLU A 247 REMARK 465 PRO A 248 REMARK 465 GLY A 249 REMARK 465 ASP A 250 REMARK 465 GLU A 251 REMARK 465 THR A 252 REMARK 465 ALA A 253 REMARK 465 MET B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 THR B 6 REMARK 465 GLN B 7 REMARK 465 PRO B 8 REMARK 465 LEU B 9 REMARK 465 SER B 10 REMARK 465 GLU B 11 REMARK 465 LYS B 12 REMARK 465 LEU B 13 REMARK 465 PRO B 14 REMARK 465 ALA B 15 REMARK 465 SER B 71 REMARK 465 SER B 72 REMARK 465 GLU B 73 REMARK 465 ASN B 74 REMARK 465 TRP B 75 REMARK 465 ASN B 76 REMARK 465 ARG B 77 REMARK 465 PRO B 78 REMARK 465 ALA B 79 REMARK 465 GLN B 80 REMARK 465 GLU B 81 REMARK 465 VAL B 82 REMARK 465 SER B 83 REMARK 465 ALA B 84 REMARK 465 LEU B 85 REMARK 465 MET B 86 REMARK 465 ARG B 239 REMARK 465 GLU B 240 REMARK 465 ARG B 241 REMARK 465 ARG B 242 REMARK 465 PHE B 243 REMARK 465 GLY B 244 REMARK 465 GLY B 245 REMARK 465 THR B 246 REMARK 465 GLU B 247 REMARK 465 PRO B 248 REMARK 465 GLY B 249 REMARK 465 ASP B 250 REMARK 465 GLU B 251 REMARK 465 THR B 252 REMARK 465 ALA B 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 91 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 91 CZ3 CH2 REMARK 470 ARG A 115 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 119 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 213 O HOH A 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 92 -50.37 -26.85 REMARK 500 ASP A 94 -57.44 -172.63 REMARK 500 HIS A 199 64.03 -116.08 REMARK 500 PHE A 204 -147.02 -77.61 REMARK 500 LEU A 206 -59.81 -125.55 REMARK 500 ASP A 225 -165.00 -125.60 REMARK 500 HIS B 199 66.04 -108.13 REMARK 500 PHE B 204 -155.58 -73.65 REMARK 500 LEU B 206 -60.88 -121.08 REMARK 500 ASP B 225 -164.92 -118.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CQJ RELATED DB: PDB DBREF 5CQB A 2 253 UNP P60472 UPPS_ECOLI 2 253 DBREF 5CQB B 2 253 UNP P60472 UPPS_ECOLI 2 253 SEQRES 1 A 252 MET LEU SER ALA THR GLN PRO LEU SER GLU LYS LEU PRO SEQRES 2 A 252 ALA HIS GLY CYS ARG HIS VAL ALA ILE ILE MET ASP GLY SEQRES 3 A 252 ASN GLY ARG TRP ALA LYS LYS GLN GLY LYS ILE ARG ALA SEQRES 4 A 252 PHE GLY HIS LYS ALA GLY ALA LYS SER VAL ARG ARG ALA SEQRES 5 A 252 VAL SER PHE ALA ALA ASN ASN GLY ILE GLU ALA LEU THR SEQRES 6 A 252 LEU TYR ALA PHE SER SER GLU ASN TRP ASN ARG PRO ALA SEQRES 7 A 252 GLN GLU VAL SER ALA LEU MET GLU LEU PHE VAL TRP ALA SEQRES 8 A 252 LEU ASP SER GLU VAL LYS SER LEU HIS ARG HIS ASN VAL SEQRES 9 A 252 ARG LEU ARG ILE ILE GLY ASP THR SER ARG PHE ASN SER SEQRES 10 A 252 ARG LEU GLN GLU ARG ILE ARG LYS SER GLU ALA LEU THR SEQRES 11 A 252 ALA GLY ASN THR GLY LEU THR LEU ASN ILE ALA ALA ASN SEQRES 12 A 252 TYR GLY GLY ARG TRP ASP ILE VAL GLN GLY VAL ARG GLN SEQRES 13 A 252 LEU ALA GLU LYS VAL GLN GLN GLY ASN LEU GLN PRO ASP SEQRES 14 A 252 GLN ILE ASP GLU GLU MET LEU ASN GLN HIS VAL CYS MET SEQRES 15 A 252 HIS GLU LEU ALA PRO VAL ASP LEU VAL ILE ARG THR GLY SEQRES 16 A 252 GLY GLU HIS ARG ILE SER ASN PHE LEU LEU TRP GLN ILE SEQRES 17 A 252 ALA TYR ALA GLU LEU TYR PHE THR ASP VAL LEU TRP PRO SEQRES 18 A 252 ASP PHE ASP GLU GLN ASP PHE GLU GLY ALA LEU ASN ALA SEQRES 19 A 252 PHE ALA ASN ARG GLU ARG ARG PHE GLY GLY THR GLU PRO SEQRES 20 A 252 GLY ASP GLU THR ALA SEQRES 1 B 252 MET LEU SER ALA THR GLN PRO LEU SER GLU LYS LEU PRO SEQRES 2 B 252 ALA HIS GLY CYS ARG HIS VAL ALA ILE ILE MET ASP GLY SEQRES 3 B 252 ASN GLY ARG TRP ALA LYS LYS GLN GLY LYS ILE ARG ALA SEQRES 4 B 252 PHE GLY HIS LYS ALA GLY ALA LYS SER VAL ARG ARG ALA SEQRES 5 B 252 VAL SER PHE ALA ALA ASN ASN GLY ILE GLU ALA LEU THR SEQRES 6 B 252 LEU TYR ALA PHE SER SER GLU ASN TRP ASN ARG PRO ALA SEQRES 7 B 252 GLN GLU VAL SER ALA LEU MET GLU LEU PHE VAL TRP ALA SEQRES 8 B 252 LEU ASP SER GLU VAL LYS SER LEU HIS ARG HIS ASN VAL SEQRES 9 B 252 ARG LEU ARG ILE ILE GLY ASP THR SER ARG PHE ASN SER SEQRES 10 B 252 ARG LEU GLN GLU ARG ILE ARG LYS SER GLU ALA LEU THR SEQRES 11 B 252 ALA GLY ASN THR GLY LEU THR LEU ASN ILE ALA ALA ASN SEQRES 12 B 252 TYR GLY GLY ARG TRP ASP ILE VAL GLN GLY VAL ARG GLN SEQRES 13 B 252 LEU ALA GLU LYS VAL GLN GLN GLY ASN LEU GLN PRO ASP SEQRES 14 B 252 GLN ILE ASP GLU GLU MET LEU ASN GLN HIS VAL CYS MET SEQRES 15 B 252 HIS GLU LEU ALA PRO VAL ASP LEU VAL ILE ARG THR GLY SEQRES 16 B 252 GLY GLU HIS ARG ILE SER ASN PHE LEU LEU TRP GLN ILE SEQRES 17 B 252 ALA TYR ALA GLU LEU TYR PHE THR ASP VAL LEU TRP PRO SEQRES 18 B 252 ASP PHE ASP GLU GLN ASP PHE GLU GLY ALA LEU ASN ALA SEQRES 19 B 252 PHE ALA ASN ARG GLU ARG ARG PHE GLY GLY THR GLU PRO SEQRES 20 B 252 GLY ASP GLU THR ALA HET PGE A 301 10 HETNAM PGE TRIETHYLENE GLYCOL FORMUL 3 PGE C6 H14 O4 FORMUL 4 HOH *74(H2 O) HELIX 1 AA1 GLY A 27 GLN A 35 1 9 HELIX 2 AA2 ILE A 38 ASN A 60 1 23 HELIX 3 AA3 ASP A 94 HIS A 103 1 10 HELIX 4 AA4 LEU A 120 ALA A 132 1 13 HELIX 5 AA5 GLY A 146 GLN A 164 1 19 HELIX 6 AA6 GLN A 168 ILE A 172 5 5 HELIX 7 AA7 ASP A 173 GLN A 179 1 7 HELIX 8 AA8 LEU A 206 ALA A 210 5 5 HELIX 9 AA9 LEU A 220 PHE A 224 5 5 HELIX 10 AB1 ASP A 225 ARG A 239 1 15 HELIX 11 AB2 GLY B 27 GLN B 35 1 9 HELIX 12 AB3 ILE B 38 ASN B 60 1 23 HELIX 13 AB4 LEU B 88 SER B 95 1 8 HELIX 14 AB5 GLU B 96 HIS B 103 1 8 HELIX 15 AB6 ASP B 112 PHE B 116 5 5 HELIX 16 AB7 ASN B 117 ALA B 132 1 16 HELIX 17 AB8 GLY B 146 GLN B 164 1 19 HELIX 18 AB9 GLN B 168 ILE B 172 5 5 HELIX 19 AC1 ASP B 173 GLN B 179 1 7 HELIX 20 AC2 LEU B 206 ALA B 210 5 5 HELIX 21 AC3 ASP B 225 ASN B 238 1 14 SHEET 1 AA1 6 ARG A 106 ILE A 110 0 SHEET 2 AA1 6 THR A 138 ALA A 142 1 O LEU A 139 N ARG A 106 SHEET 3 AA1 6 ALA A 64 ALA A 69 1 N LEU A 67 O ASN A 140 SHEET 4 AA1 6 HIS A 20 MET A 25 1 N ILE A 23 O THR A 66 SHEET 5 AA1 6 LEU A 191 ARG A 194 1 O ILE A 193 N ALA A 22 SHEET 6 AA1 6 GLU A 213 PHE A 216 1 O GLU A 213 N VAL A 192 SHEET 1 AA2 6 ARG B 106 ILE B 110 0 SHEET 2 AA2 6 THR B 138 ALA B 142 1 O LEU B 139 N ARG B 106 SHEET 3 AA2 6 ALA B 64 ALA B 69 1 N LEU B 67 O ASN B 140 SHEET 4 AA2 6 HIS B 20 MET B 25 1 N ILE B 23 O THR B 66 SHEET 5 AA2 6 LEU B 191 ARG B 194 1 O ILE B 193 N ALA B 22 SHEET 6 AA2 6 GLU B 213 PHE B 216 1 O TYR B 215 N VAL B 192 SITE 1 AC1 6 PHE A 41 ALA A 45 LYS A 48 GLN A 163 SITE 2 AC1 6 VAL B 162 GLN B 163 CRYST1 62.981 68.229 111.412 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015878 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014657 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008976 0.00000