HEADER HYDROLASE 21-JUL-15 5CQD TITLE CRYSTAL STRUCTURE OF THE CANCER GENOMIC DNA MUTATOR APOBEC3B COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DC->DU-EDITING ENZYME APOBEC-3B; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 187-378; COMPND 5 SYNONYM: A3B,PHORBOLIN-1-RELATED PROTEIN,PHORBOLIN-2/3; COMPND 6 EC: 3.5.4.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APOBEC3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APOBEC, DEAMINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SHI,K.KURAHASHI,H.AIHARA REVDAT 6 27-SEP-23 5CQD 1 LINK REVDAT 5 11-DEC-19 5CQD 1 REMARK REVDAT 4 27-SEP-17 5CQD 1 JRNL REMARK REVDAT 3 02-DEC-15 5CQD 1 JRNL REVDAT 2 14-OCT-15 5CQD 1 JRNL REVDAT 1 07-OCT-15 5CQD 0 JRNL AUTH K.SHI,M.A.CARPENTER,K.KURAHASHI,R.S.HARRIS,H.AIHARA JRNL TITL CRYSTAL STRUCTURE OF THE DNA DEAMINASE APOBEC3B CATALYTIC JRNL TITL 2 DOMAIN. JRNL REF J.BIOL.CHEM. V. 290 28120 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26416889 JRNL DOI 10.1074/JBC.M115.679951 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2166: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 18464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1515 - 5.0117 0.97 2884 145 0.1733 0.2197 REMARK 3 2 5.0117 - 3.9786 0.95 2816 146 0.1443 0.1660 REMARK 3 3 3.9786 - 3.4759 0.95 2822 150 0.1659 0.1933 REMARK 3 4 3.4759 - 3.1582 0.97 2857 150 0.1804 0.2458 REMARK 3 5 3.1582 - 2.9318 0.99 2934 154 0.1973 0.2050 REMARK 3 6 2.9318 - 2.7590 0.98 2910 154 0.2063 0.2326 REMARK 3 7 2.7590 - 2.6208 0.98 2891 153 0.2147 0.2631 REMARK 3 8 2.6208 - 2.5068 0.99 2949 153 0.2093 0.2718 REMARK 3 9 2.5068 - 2.4103 0.99 2864 155 0.2450 0.3114 REMARK 3 10 2.4103 - 2.3271 0.95 2814 146 0.2597 0.2923 REMARK 3 11 2.3271 - 2.2543 0.89 2642 142 0.2899 0.3190 REMARK 3 12 2.2543 - 2.1899 0.80 2349 119 0.3141 0.3979 REMARK 3 13 2.1899 - 2.1323 0.75 2221 121 0.3032 0.3723 REMARK 3 14 2.1323 - 2.0802 0.49 1453 80 0.3307 0.3421 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3192 REMARK 3 ANGLE : 0.566 4313 REMARK 3 CHIRALITY : 0.043 444 REMARK 3 PLANARITY : 0.003 561 REMARK 3 DIHEDRAL : 17.655 1881 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.9366 2.6578 -1.3874 REMARK 3 T TENSOR REMARK 3 T11: 0.4964 T22: 0.4083 REMARK 3 T33: 0.5298 T12: 0.0275 REMARK 3 T13: 0.0034 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 0.2335 L22: 0.1600 REMARK 3 L33: 0.0570 L12: 0.1928 REMARK 3 L13: 0.1163 L23: 0.0961 REMARK 3 S TENSOR REMARK 3 S11: 0.1630 S12: -0.1017 S13: -0.2462 REMARK 3 S21: 0.0205 S22: -0.1277 S23: -0.0980 REMARK 3 S31: -0.1282 S32: 0.1971 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 215 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.3502 11.8291 2.8985 REMARK 3 T TENSOR REMARK 3 T11: 0.4231 T22: 0.4556 REMARK 3 T33: 0.4255 T12: -0.0076 REMARK 3 T13: -0.0093 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.5819 L22: 0.8975 REMARK 3 L33: 0.4463 L12: 0.3353 REMARK 3 L13: -0.3297 L23: -0.2272 REMARK 3 S TENSOR REMARK 3 S11: 0.0514 S12: -0.1031 S13: 0.0048 REMARK 3 S21: -0.0547 S22: -0.0270 S23: 0.0075 REMARK 3 S31: -0.0658 S32: -0.0066 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 188 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.9265 20.8272 -32.7342 REMARK 3 T TENSOR REMARK 3 T11: 0.4954 T22: 0.5082 REMARK 3 T33: 0.4851 T12: -0.0301 REMARK 3 T13: 0.0272 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.0395 L22: 0.0206 REMARK 3 L33: 0.0542 L12: -0.0099 REMARK 3 L13: -0.0424 L23: -0.0029 REMARK 3 S TENSOR REMARK 3 S11: 0.0735 S12: 0.2254 S13: 0.1308 REMARK 3 S21: -0.0710 S22: -0.1593 S23: -0.1559 REMARK 3 S31: -0.5019 S32: 0.1942 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 215 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.0803 12.6370 -34.4006 REMARK 3 T TENSOR REMARK 3 T11: 0.4157 T22: 0.4308 REMARK 3 T33: 0.4438 T12: -0.0191 REMARK 3 T13: -0.0190 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.2051 L22: 0.2261 REMARK 3 L33: 0.6188 L12: -0.0572 REMARK 3 L13: 0.1298 L23: -0.3674 REMARK 3 S TENSOR REMARK 3 S11: 0.0717 S12: -0.0486 S13: 0.0329 REMARK 3 S21: -0.1151 S22: 0.0554 S23: 0.0378 REMARK 3 S31: -0.0320 S32: -0.1110 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 310 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.0348 9.7334 -27.5433 REMARK 3 T TENSOR REMARK 3 T11: 0.4240 T22: 0.4018 REMARK 3 T33: 0.4145 T12: -0.0173 REMARK 3 T13: 0.0003 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.1626 L22: 0.8510 REMARK 3 L33: 0.5467 L12: -0.3656 REMARK 3 L13: 0.2890 L23: -0.6784 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: 0.0306 S13: 0.0624 REMARK 3 S21: -0.0719 S22: -0.0109 S23: -0.1012 REMARK 3 S31: 0.2622 S32: 0.0874 S33: 0.0009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CQD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211973. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18464 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 52.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3V4K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, MES-NAOH, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.42000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 379 REMARK 465 MET C 186 REMARK 465 GLU C 187 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 208 HH11 ARG A 210 1.54 REMARK 500 O ASN A 203 NH2 ARG A 210 2.05 REMARK 500 NH1 ARG C 327 O LEU C 377 2.05 REMARK 500 O LEU C 223 O HOH C 601 2.08 REMARK 500 O HOH C 623 O HOH C 626 2.10 REMARK 500 O HOH C 623 O HOH C 630 2.13 REMARK 500 O3 GOL A 502 O HOH A 601 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 210 44.15 -104.72 REMARK 500 HIS A 234 52.49 -93.01 REMARK 500 LEU C 189 4.85 -68.03 REMARK 500 HIS C 234 51.09 -107.54 REMARK 500 ASN C 300 70.13 -111.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 253 ND1 REMARK 620 2 CYS A 284 SG 114.8 REMARK 620 3 CYS A 289 SG 109.3 118.4 REMARK 620 4 HOH A 603 O 102.0 108.6 101.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 253 ND1 REMARK 620 2 CYS C 284 SG 115.7 REMARK 620 3 CYS C 289 SG 111.4 121.8 REMARK 620 4 HOH C 602 O 95.7 102.5 104.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CQH RELATED DB: PDB REMARK 900 RELATED ID: 5CQI RELATED DB: PDB REMARK 900 RELATED ID: 5CQK RELATED DB: PDB DBREF 5CQD A 187 378 UNP Q9UH17 ABC3B_HUMAN 187 378 DBREF 5CQD C 187 378 UNP Q9UH17 ABC3B_HUMAN 187 378 SEQADV 5CQD MET A 186 UNP Q9UH17 INITIATING METHIONINE SEQADV 5CQD SER A 200 UNP Q9UH17 PHE 200 ENGINEERED MUTATION SEQADV 5CQD SER A 228 UNP Q9UH17 TRP 228 ENGINEERED MUTATION SEQADV 5CQD LYS A 230 UNP Q9UH17 LEU 230 ENGINEERED MUTATION SEQADV 5CQD A UNP Q9UH17 ALA 242 DELETION SEQADV 5CQD A UNP Q9UH17 LYS 243 DELETION SEQADV 5CQD A UNP Q9UH17 ASN 244 DELETION SEQADV 5CQD A UNP Q9UH17 LEU 245 DELETION SEQADV 5CQD A UNP Q9UH17 LEU 246 DELETION SEQADV 5CQD A UNP Q9UH17 CYS 247 DELETION SEQADV 5CQD A UNP Q9UH17 GLY 248 DELETION SEQADV 5CQD A UNP Q9UH17 PHE 249 DELETION SEQADV 5CQD SER A 250 UNP Q9UH17 TYR 250 ENGINEERED MUTATION SEQADV 5CQD LYS A 308 UNP Q9UH17 PHE 308 ENGINEERED MUTATION SEQADV 5CQD LEU A 379 UNP Q9UH17 EXPRESSION TAG SEQADV 5CQD MET C 186 UNP Q9UH17 INITIATING METHIONINE SEQADV 5CQD SER C 200 UNP Q9UH17 PHE 200 ENGINEERED MUTATION SEQADV 5CQD SER C 228 UNP Q9UH17 TRP 228 ENGINEERED MUTATION SEQADV 5CQD LYS C 230 UNP Q9UH17 LEU 230 ENGINEERED MUTATION SEQADV 5CQD C UNP Q9UH17 ALA 242 DELETION SEQADV 5CQD C UNP Q9UH17 LYS 243 DELETION SEQADV 5CQD C UNP Q9UH17 ASN 244 DELETION SEQADV 5CQD C UNP Q9UH17 LEU 245 DELETION SEQADV 5CQD C UNP Q9UH17 LEU 246 DELETION SEQADV 5CQD C UNP Q9UH17 CYS 247 DELETION SEQADV 5CQD C UNP Q9UH17 GLY 248 DELETION SEQADV 5CQD C UNP Q9UH17 PHE 249 DELETION SEQADV 5CQD SER C 250 UNP Q9UH17 TYR 250 ENGINEERED MUTATION SEQADV 5CQD LYS C 308 UNP Q9UH17 PHE 308 ENGINEERED MUTATION SEQADV 5CQD LEU C 379 UNP Q9UH17 EXPRESSION TAG SEQRES 1 A 186 MET GLU ILE LEU ARG TYR LEU MET ASP PRO ASP THR PHE SEQRES 2 A 186 THR SER ASN PHE ASN ASN ASP PRO LEU VAL LEU ARG ARG SEQRES 3 A 186 ARG GLN THR TYR LEU CYS TYR GLU VAL GLU ARG LEU ASP SEQRES 4 A 186 ASN GLY THR SER VAL LYS MET ASP GLN HIS MET GLY PHE SEQRES 5 A 186 LEU CYS ASN GLU SER GLY ARG HIS ALA GLU LEU ARG PHE SEQRES 6 A 186 LEU ASP LEU VAL PRO SER LEU GLN LEU ASP PRO ALA GLN SEQRES 7 A 186 ILE TYR ARG VAL THR TRP PHE ILE SER TRP SER PRO CYS SEQRES 8 A 186 PHE SER TRP GLY CYS ALA GLY GLU VAL ARG ALA PHE LEU SEQRES 9 A 186 GLN GLU ASN THR HIS VAL ARG LEU ARG ILE LYS ALA ALA SEQRES 10 A 186 ARG ILE TYR ASP TYR ASP PRO LEU TYR LYS GLU ALA LEU SEQRES 11 A 186 GLN MET LEU ARG ASP ALA GLY ALA GLN VAL SER ILE MET SEQRES 12 A 186 THR TYR ASP GLU PHE GLU TYR CYS TRP ASP THR PHE VAL SEQRES 13 A 186 TYR ARG GLN GLY CYS PRO PHE GLN PRO TRP ASP GLY LEU SEQRES 14 A 186 GLU GLU HIS SER GLN ALA LEU SER GLY ARG LEU ARG ALA SEQRES 15 A 186 ILE LEU GLN LEU SEQRES 1 C 186 MET GLU ILE LEU ARG TYR LEU MET ASP PRO ASP THR PHE SEQRES 2 C 186 THR SER ASN PHE ASN ASN ASP PRO LEU VAL LEU ARG ARG SEQRES 3 C 186 ARG GLN THR TYR LEU CYS TYR GLU VAL GLU ARG LEU ASP SEQRES 4 C 186 ASN GLY THR SER VAL LYS MET ASP GLN HIS MET GLY PHE SEQRES 5 C 186 LEU CYS ASN GLU SER GLY ARG HIS ALA GLU LEU ARG PHE SEQRES 6 C 186 LEU ASP LEU VAL PRO SER LEU GLN LEU ASP PRO ALA GLN SEQRES 7 C 186 ILE TYR ARG VAL THR TRP PHE ILE SER TRP SER PRO CYS SEQRES 8 C 186 PHE SER TRP GLY CYS ALA GLY GLU VAL ARG ALA PHE LEU SEQRES 9 C 186 GLN GLU ASN THR HIS VAL ARG LEU ARG ILE LYS ALA ALA SEQRES 10 C 186 ARG ILE TYR ASP TYR ASP PRO LEU TYR LYS GLU ALA LEU SEQRES 11 C 186 GLN MET LEU ARG ASP ALA GLY ALA GLN VAL SER ILE MET SEQRES 12 C 186 THR TYR ASP GLU PHE GLU TYR CYS TRP ASP THR PHE VAL SEQRES 13 C 186 TYR ARG GLN GLY CYS PRO PHE GLN PRO TRP ASP GLY LEU SEQRES 14 C 186 GLU GLU HIS SER GLN ALA LEU SER GLY ARG LEU ARG ALA SEQRES 15 C 186 ILE LEU GLN LEU HET ZN A 501 1 HET GOL A 502 14 HET GOL A 503 14 HET GOL A 504 14 HET GOL A 505 13 HET ZN C 501 1 HET GOL C 502 14 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 GOL 5(C3 H8 O3) FORMUL 10 HOH *75(H2 O) HELIX 1 AA1 ASP A 194 ASN A 203 1 10 HELIX 2 AA2 HIS A 253 GLN A 266 1 14 HELIX 3 AA3 GLY A 288 ASN A 300 1 13 HELIX 4 AA4 LEU A 318 ALA A 329 1 12 HELIX 5 AA5 THR A 337 VAL A 349 1 13 HELIX 6 AA6 GLY A 361 LEU A 377 1 17 HELIX 7 AA7 ASP C 194 ASN C 203 1 10 HELIX 8 AA8 HIS C 253 VAL C 262 1 10 HELIX 9 AA9 PRO C 263 GLN C 266 5 4 HELIX 10 AB1 GLY C 288 ASN C 300 1 13 HELIX 11 AB2 LEU C 318 ALA C 329 1 12 HELIX 12 AB3 THR C 337 VAL C 349 1 13 HELIX 13 AB4 GLY C 361 GLN C 378 1 18 SHEET 1 AA1 3 THR A 227 LYS A 230 0 SHEET 2 AA1 3 TYR A 215 ASP A 224 -1 N ARG A 222 O VAL A 229 SHEET 3 AA1 3 GLY A 236 CYS A 239 -1 O LEU A 238 N LEU A 216 SHEET 1 AA2 5 THR A 227 LYS A 230 0 SHEET 2 AA2 5 TYR A 215 ASP A 224 -1 N ARG A 222 O VAL A 229 SHEET 3 AA2 5 TYR A 273 TRP A 281 -1 O PHE A 278 N CYS A 217 SHEET 4 AA2 5 VAL A 303 ARG A 311 1 O LYS A 308 N TRP A 277 SHEET 5 AA2 5 GLN A 332 ILE A 335 1 O SER A 334 N ALA A 309 SHEET 1 AA3 5 THR C 227 CYS C 239 0 SHEET 2 AA3 5 TYR C 215 ASP C 224 -1 N LEU C 216 O LEU C 238 SHEET 3 AA3 5 TYR C 273 TRP C 281 -1 O PHE C 278 N CYS C 217 SHEET 4 AA3 5 VAL C 303 ARG C 311 1 O ARG C 306 N VAL C 275 SHEET 5 AA3 5 GLN C 332 ILE C 335 1 O GLN C 332 N ILE C 307 LINK ND1 HIS A 253 ZN ZN A 501 1555 1555 2.04 LINK SG CYS A 284 ZN ZN A 501 1555 1555 2.23 LINK SG CYS A 289 ZN ZN A 501 1555 1555 2.16 LINK ZN ZN A 501 O HOH A 603 1555 1555 2.08 LINK ND1 HIS C 253 ZN ZN C 501 1555 1555 2.02 LINK SG CYS C 284 ZN ZN C 501 1555 1555 2.24 LINK SG CYS C 289 ZN ZN C 501 1555 1555 2.19 LINK ZN ZN C 501 O HOH C 602 1555 1555 2.27 SITE 1 AC1 5 HIS A 253 CYS A 284 CYS A 289 GOL A 502 SITE 2 AC1 5 HOH A 603 SITE 1 AC2 11 ARG A 211 ARG A 212 GLN A 213 THR A 214 SITE 2 AC2 11 ASN A 240 HIS A 253 TRP A 281 TYR A 313 SITE 3 AC2 11 ZN A 501 HOH A 601 HOH A 603 SITE 1 AC3 1 SER A 286 SITE 1 AC4 5 CYS A 239 GLU A 241 ARG A 257 HOH A 612 SITE 2 AC4 5 HOH A 631 SITE 1 AC5 2 GLU A 342 ASP A 346 SITE 1 AC6 4 HIS C 253 CYS C 284 CYS C 289 HOH C 602 SITE 1 AC7 8 ARG C 211 ARG C 212 GLN C 213 THR C 214 SITE 2 AC7 8 ASN C 240 HIS C 253 TYR C 313 HOH C 602 CRYST1 53.440 50.840 70.150 90.00 100.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018713 0.000000 0.003579 0.00000 SCALE2 0.000000 0.019670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014514 0.00000