HEADER OXIDOREDUCTASE 21-JUL-15 5CQF TITLE CRYSTAL STRUCTURE OF L-LYSINE 6-MONOOXYGENASE FROM PSEUDOMONAS TITLE 2 SYRINGAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-LYSINE 6-MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. TOMATO (STRAIN SOURCE 3 DC3000); SOURCE 4 ORGANISM_TAXID: 223283; SOURCE 5 STRAIN: DC3000; SOURCE 6 GENE: PSPTO_2961; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PGROW7-K; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG73 KEYWDS NATURAL PRODUCT SYNTHESIS, STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, MCSG, ENZYME DISCOVERY FOR NATURAL KEYWDS 3 PRODUCT BIOSYNTHESIS, NATPRO, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.MICHALSKA,L.BIGELOW,R.JEDRZEJCZAK,R.S.WEERTH,H.CAO,R.YENNAMALLI, AUTHOR 2 G.N.PHILLIPS JR.,M.G.THOMAS,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (MCSG),ENZYME DISCOVERY FOR NATURAL PRODUCT AUTHOR 4 BIOSYNTHESIS (NATPRO) REVDAT 4 16-OCT-24 5CQF 1 REMARK REVDAT 3 25-DEC-19 5CQF 1 REMARK REVDAT 2 27-SEP-17 5CQF 1 REMARK REVDAT 1 30-SEP-15 5CQF 0 JRNL AUTH K.MICHALSKA,L.BIGELOW,R.JEDRZEJCZAK,R.S.WEERTH,H.CAO, JRNL AUTH 2 R.YENNAMALLI,G.N.PHILLIPS JR.,M.G.THOMAS,A.JOACHIMIAK, JRNL AUTH 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG), JRNL AUTH 4 ENZYME DISCOVERY FOR NATURAL PRODUCT BIOSYNTHESIS (NATPRO) JRNL TITL CRYSTAL STRUCTURE OF L-LYSINE 6-MONOOXYGENASE FROM JRNL TITL 2 PSEUDOMONAS SYRINGAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1095 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1425 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3302 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.60000 REMARK 3 B22 (A**2) : -2.10000 REMARK 3 B33 (A**2) : 1.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.307 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.095 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3383 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3168 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4597 ; 1.401 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7239 ; 0.764 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 418 ; 5.569 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;31.144 ;22.262 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 520 ;14.581 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;19.565 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 500 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3896 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 858 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1675 ; 2.268 ; 3.478 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1674 ; 2.263 ; 3.476 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2092 ; 3.662 ; 5.209 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2093 ; 3.662 ; 5.212 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1707 ; 2.580 ; 3.801 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1705 ; 2.581 ; 3.796 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2505 ; 4.245 ; 5.582 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3772 ; 6.203 ;27.526 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3763 ; 6.206 ;27.498 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4708 29.7210 40.7619 REMARK 3 T TENSOR REMARK 3 T11: 0.2809 T22: 0.1280 REMARK 3 T33: 0.1822 T12: -0.0685 REMARK 3 T13: -0.1388 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.1329 L22: 2.4585 REMARK 3 L33: 0.9861 L12: 0.3724 REMARK 3 L13: 0.1646 L23: 0.7338 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: -0.0789 S13: 0.1107 REMARK 3 S21: -0.5566 S22: 0.0538 S23: 0.3610 REMARK 3 S31: -0.0597 S32: -0.1026 S33: -0.0054 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 166 A 240 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8012 23.1307 67.5961 REMARK 3 T TENSOR REMARK 3 T11: 0.0651 T22: 0.1700 REMARK 3 T33: 0.2252 T12: -0.0521 REMARK 3 T13: 0.0030 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.8123 L22: 0.8774 REMARK 3 L33: 0.7554 L12: 0.5013 REMARK 3 L13: 0.2848 L23: -0.1008 REMARK 3 S TENSOR REMARK 3 S11: -0.1209 S12: 0.1749 S13: 0.0407 REMARK 3 S21: -0.0553 S22: -0.0084 S23: 0.1619 REMARK 3 S31: 0.1670 S32: -0.0360 S33: 0.1293 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 241 A 276 REMARK 3 ORIGIN FOR THE GROUP (A): 40.5147 15.6379 57.0321 REMARK 3 T TENSOR REMARK 3 T11: 0.2080 T22: 0.1586 REMARK 3 T33: 0.1772 T12: -0.0269 REMARK 3 T13: -0.0133 T23: 0.0429 REMARK 3 L TENSOR REMARK 3 L11: 0.8786 L22: 1.1067 REMARK 3 L33: 0.8417 L12: -0.8618 REMARK 3 L13: -0.1004 L23: -0.2167 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: -0.0823 S13: -0.0124 REMARK 3 S21: -0.0923 S22: 0.0858 S23: -0.0965 REMARK 3 S31: 0.0950 S32: -0.1659 S33: -0.0969 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 277 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9990 31.8535 73.3797 REMARK 3 T TENSOR REMARK 3 T11: 0.1213 T22: 0.1946 REMARK 3 T33: 0.1737 T12: -0.0355 REMARK 3 T13: 0.0017 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.7436 L22: 2.1065 REMARK 3 L33: 7.0753 L12: -0.8817 REMARK 3 L13: -2.2740 L23: 2.3756 REMARK 3 S TENSOR REMARK 3 S11: -0.1062 S12: -0.0731 S13: -0.0680 REMARK 3 S21: 0.0444 S22: -0.0480 S23: 0.3602 REMARK 3 S31: 0.3060 S32: 0.2977 S33: 0.1542 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 302 A 349 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9666 15.6753 76.2620 REMARK 3 T TENSOR REMARK 3 T11: 0.1026 T22: 0.1335 REMARK 3 T33: 0.2306 T12: -0.0379 REMARK 3 T13: 0.0683 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 2.9846 L22: 3.0217 REMARK 3 L33: 0.7754 L12: 0.0937 REMARK 3 L13: 0.7198 L23: -1.3184 REMARK 3 S TENSOR REMARK 3 S11: 0.1257 S12: -0.0600 S13: -0.1084 REMARK 3 S21: 0.3177 S22: -0.0311 S23: 0.2510 REMARK 3 S31: -0.0990 S32: 0.0051 S33: -0.0946 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 350 A 428 REMARK 3 ORIGIN FOR THE GROUP (A): 31.4938 14.0990 42.0468 REMARK 3 T TENSOR REMARK 3 T11: 0.4275 T22: 0.0435 REMARK 3 T33: 0.0845 T12: -0.0521 REMARK 3 T13: -0.0397 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 1.5433 L22: 1.2567 REMARK 3 L33: 0.5724 L12: 1.0482 REMARK 3 L13: 0.2347 L23: -0.3622 REMARK 3 S TENSOR REMARK 3 S11: -0.0828 S12: -0.1470 S13: 0.0599 REMARK 3 S21: -0.3420 S22: -0.0264 S23: -0.0513 REMARK 3 S31: 0.1794 S32: -0.0528 S33: 0.1093 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5CQF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21336 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.97700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NAI, 20% PEG3350, 75 UM FAD, REMARK 280 CRYO 15% GLYCROL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.60900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.74750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.50800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.60900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.74750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.50800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.60900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.74750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.50800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.60900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.74750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.50800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 65500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 77.21800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 85.49500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 77.21800 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 139.01600 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 85.49500 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 139.01600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 I IOD A 508 LIES ON A SPECIAL POSITION. REMARK 375 I IOD A 509 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 GLY A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 PRO A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 LEU A 9 REMARK 465 PRO A 429 REMARK 465 ALA A 430 REMARK 465 THR A 431 REMARK 465 ASP A 432 REMARK 465 ALA A 433 REMARK 465 PRO A 434 REMARK 465 LEU A 435 REMARK 465 LEU A 436 REMARK 465 ALA A 437 REMARK 465 GLN A 438 REMARK 465 TRP A 439 REMARK 465 THR A 440 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 73 -162.97 -105.22 REMARK 500 VAL A 75 -34.17 -138.01 REMARK 500 ARG A 140 -52.89 -132.96 REMARK 500 CYS A 235 -138.21 -121.60 REMARK 500 TYR A 279 107.90 -58.23 REMARK 500 GLN A 407 38.86 -91.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 511 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC109042 RELATED DB: TARGETTRACK DBREF 5CQF A 1 440 UNP Q881D3 Q881D3_PSESM 1 440 SEQADV 5CQF SER A -2 UNP Q881D3 EXPRESSION TAG SEQADV 5CQF ASN A -1 UNP Q881D3 EXPRESSION TAG SEQADV 5CQF ALA A 0 UNP Q881D3 EXPRESSION TAG SEQRES 1 A 443 SER ASN ALA MSE GLY ASN SER THR PRO HIS SER LEU HIS SEQRES 2 A 443 SER ASP ALA ILE CYS ILE GLY PHE GLY PRO ALA GLY ILE SEQRES 3 A 443 ALA LEU ALA CYS ALA PHE GLU ASP ALA ARG GLU ALA SER SEQRES 4 A 443 GLN PRO LEU GLY ASP LEU SER ILE GLY TYR LEU GLU ALA SEQRES 5 A 443 ALA PRO ASP THR GLN TRP HIS ARG GLU LEU LEU LEU ALA SEQRES 6 A 443 GLY THR ASP ILE ASN HIS HIS VAL PHE ARG ASP LEU VAL SEQRES 7 A 443 THR PRO ARG ASN PRO ARG SER ARG PHE SER PHE ALA MSE SEQRES 8 A 443 TYR LEU LYS ASP GLN GLY ARG MSE PHE ASP PHE GLY LEU SEQRES 9 A 443 LEU GLY ARG PRO ALA SER ARG HIS GLU TRP SER ASP TYR SEQRES 10 A 443 LEU GLY TRP VAL SER ARG GLN VAL ASP GLY HIS THR ARG SEQRES 11 A 443 PHE ASP THR PRO VAL THR GLU ILE ASP PRO VAL ILE ARG SEQRES 12 A 443 ASN GLY ARG LEU GLN GLU VAL ARG VAL ARG THR PRO GLN SEQRES 13 A 443 GLY SER PHE ALA THR ARG ASN LEU VAL LEU SER SER GLY SEQRES 14 A 443 SER ALA PRO ARG ILE PRO GLN ALA PHE GLU ALA LEU LEU SEQRES 15 A 443 GLY PRO THR LEU PHE HIS THR SER ARG PHE LEU THR ARG SEQRES 16 A 443 LEU GLN ALA PHE GLY LYS GLN LEU PRO LYS ARG TRP LEU SEQRES 17 A 443 VAL LEU GLY SER GLY GLN SER ALA SER GLU SER VAL LEU SEQRES 18 A 443 GLU LEU VAL SER ARG ASP PRO ALA ILE GLU VAL HIS SER SEQRES 19 A 443 VAL HIS ARG CYS ALA GLY PHE LYS LEU THR GLN LEU GLY SEQRES 20 A 443 GLN PHE PRO ASN ARG VAL PHE ALA PRO ASP HIS VAL ASP SEQRES 21 A 443 TYR PHE HIS SER LEU ASN PRO ALA ALA ARG GLN ARG PHE SEQRES 22 A 443 LEU ASP TRP SER ARG SER THR ASN TYR ALA GLY ILE ASP SEQRES 23 A 443 PRO ASP GLU ARG GLN LYS LEU PHE SER LEU ILE TYR GLU SEQRES 24 A 443 ASP SER ILE ALA GLY ARG THR ARG LEU HIS THR TYR ALA SEQRES 25 A 443 TYR SER VAL ILE SER ALA ILE GLU HIS THR ALA ASP GLY SEQRES 26 A 443 TYR ARG VAL GLU LEU THR ASP THR PHE SER GLN ARG THR SEQRES 27 A 443 ARG VAL LEU GLU VAL ASP ALA VAL VAL LEU GLY THR GLY SEQRES 28 A 443 TYR GLN GLN TYR LEU ILE PRO PRO LEU LEU SER GLY LEU SEQRES 29 A 443 GLN PRO TRP LEU ALA ALA ASP VAL ASP GLY GLY LEU LEU SEQRES 30 A 443 ILE ASP ARG ASP TYR ARG VAL ALA THR GLN GLY ALA CYS SEQRES 31 A 443 ASP VAL ASN ILE TRP VAL ASN GLY LEU SER GLU ARG SER SEQRES 32 A 443 HIS GLY ILE SER ASP SER GLN SER PHE SER LEU MSE ALA SEQRES 33 A 443 LEU ARG ALA GLY ARG ILE ALA SER ALA LEU GLU ARG ALA SEQRES 34 A 443 VAL GLU PRO ALA THR ASP ALA PRO LEU LEU ALA GLN TRP SEQRES 35 A 443 THR MODRES 5CQF MSE A 88 MET MODIFIED RESIDUE MODRES 5CQF MSE A 96 MET MODIFIED RESIDUE MODRES 5CQF MSE A 412 MET MODIFIED RESIDUE HET MSE A 88 8 HET MSE A 96 8 HET MSE A 412 8 HET IOD A 501 1 HET IOD A 502 1 HET IOD A 503 1 HET IOD A 504 1 HET IOD A 505 1 HET IOD A 506 1 HET IOD A 507 1 HET IOD A 508 1 HET IOD A 509 1 HET IOD A 510 2 HET IOD A 511 1 HETNAM MSE SELENOMETHIONINE HETNAM IOD IODIDE ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 IOD 11(I 1-) FORMUL 13 HOH *82(H2 O) HELIX 1 AA1 GLY A 19 ALA A 35 1 17 HELIX 2 AA2 GLN A 37 LEU A 42 5 6 HELIX 3 AA3 THR A 53 ALA A 62 1 10 HELIX 4 AA4 SER A 85 GLY A 94 1 10 HELIX 5 AA5 ARG A 95 GLY A 103 1 9 HELIX 6 AA6 SER A 107 ASP A 123 1 17 HELIX 7 AA7 PRO A 172 LEU A 179 5 8 HELIX 8 AA8 ARG A 188 PHE A 196 1 9 HELIX 9 AA9 GLY A 210 ASP A 224 1 15 HELIX 10 AB1 GLY A 237 THR A 241 5 5 HELIX 11 AB2 GLN A 245 ARG A 249 5 5 HELIX 12 AB3 PHE A 251 LEU A 262 1 12 HELIX 13 AB4 ASN A 263 ASN A 278 1 16 HELIX 14 AB5 ASP A 283 ALA A 300 1 18 HELIX 15 AB6 PRO A 355 LEU A 365 5 11 HELIX 16 AB7 SER A 397 GLY A 402 1 6 HELIX 17 AB8 SER A 408 ALA A 426 1 19 SHEET 1 AA1 5 THR A 126 ARG A 127 0 SHEET 2 AA1 5 ILE A 44 LEU A 47 1 N TYR A 46 O ARG A 127 SHEET 3 AA1 5 ALA A 13 ILE A 16 1 N CYS A 15 O GLY A 45 SHEET 4 AA1 5 ASN A 160 LEU A 163 1 O VAL A 162 N ILE A 16 SHEET 5 AA1 5 ASN A 390 VAL A 393 1 O ASN A 390 N LEU A 161 SHEET 1 AA2 3 GLU A 134 ILE A 139 0 SHEET 2 AA2 3 LEU A 144 THR A 151 -1 O ARG A 150 N GLU A 134 SHEET 3 AA2 3 GLY A 154 THR A 158 -1 O PHE A 156 N VAL A 149 SHEET 1 AA3 5 LEU A 183 HIS A 185 0 SHEET 2 AA3 5 ALA A 342 LEU A 345 1 O LEU A 345 N PHE A 184 SHEET 3 AA3 5 ARG A 203 LEU A 207 1 N LEU A 207 O VAL A 344 SHEET 4 AA3 5 GLU A 228 VAL A 232 1 O HIS A 230 N VAL A 206 SHEET 5 AA3 5 LEU A 305 TYR A 308 1 O HIS A 306 N SER A 231 SHEET 1 AA4 2 GLN A 242 LEU A 243 0 SHEET 2 AA4 2 GLY A 281 ILE A 282 1 O ILE A 282 N GLN A 242 SHEET 1 AA5 3 SER A 311 THR A 319 0 SHEET 2 AA5 3 GLY A 322 ASP A 329 -1 O GLU A 326 N ALA A 315 SHEET 3 AA5 3 THR A 335 VAL A 340 -1 O VAL A 340 N TYR A 323 LINK C ALA A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N TYR A 89 1555 1555 1.33 LINK C ARG A 95 N MSE A 96 1555 1555 1.32 LINK C MSE A 96 N PHE A 97 1555 1555 1.33 LINK C LEU A 411 N MSE A 412 1555 1555 1.34 LINK C MSE A 412 N ALA A 413 1555 1555 1.32 SITE 1 AC1 2 PHE A 246 GLY A 281 SITE 1 AC2 1 ARG A 287 SITE 1 AC3 2 ARG A 377 TYR A 379 SITE 1 AC4 1 HIS A 185 SITE 1 AC5 1 GLY A 237 SITE 1 AC6 3 GLY A 210 ALA A 213 GLY A 346 SITE 1 AC7 2 GLN A 242 LEU A 243 SITE 1 AC8 1 ILE A 313 SITE 1 AC9 2 HIS A 69 VAL A 70 CRYST1 77.218 85.495 139.016 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012950 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011697 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007193 0.00000