HEADER HYDROLASE 21-JUL-15 5CQK TITLE CRYSTAL STRUCTURE OF THE CANCER GENOMIC DNA MUTATOR APOBEC3B COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DC->DU-EDITING ENZYME APOBEC-3B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 187-378; COMPND 5 SYNONYM: A3B,PHORBOLIN-1-RELATED PROTEIN,PHORBOLIN-2/3; COMPND 6 EC: 3.5.4.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APOBEC3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APOBEC, DEAMINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SHI,K.KURAHASHI,H.AIHARA REVDAT 4 27-SEP-23 5CQK 1 JRNL REMARK LINK REVDAT 3 02-DEC-15 5CQK 1 JRNL REVDAT 2 14-OCT-15 5CQK 1 JRNL REVDAT 1 07-OCT-15 5CQK 0 JRNL AUTH K.SHI,M.A.CARPENTER,K.KURAHASHI,R.S.HARRIS,H.AIHARA JRNL TITL CRYSTAL STRUCTURE OF THE DNA DEAMINASE APOBEC3B CATALYTIC JRNL TITL 2 DOMAIN. JRNL REF J.BIOL.CHEM. V. 290 28120 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26416889 JRNL DOI 10.1074/JBC.M115.679951 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2166: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 13173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9288 - 4.0494 0.98 2671 146 0.1442 0.1490 REMARK 3 2 4.0494 - 3.2145 0.99 2681 139 0.1222 0.1484 REMARK 3 3 3.2145 - 2.8082 0.99 2699 149 0.1493 0.1905 REMARK 3 4 2.8082 - 2.5515 0.99 2689 130 0.1609 0.2377 REMARK 3 5 2.5515 - 2.3687 0.99 2692 149 0.1796 0.2437 REMARK 3 6 2.3687 - 2.2290 0.99 2731 151 0.1996 0.2367 REMARK 3 7 2.2290 - 2.1174 0.99 2650 142 0.2168 0.2345 REMARK 3 8 2.1174 - 2.0252 0.99 2683 126 0.2370 0.2701 REMARK 3 9 2.0252 - 1.9473 0.98 2640 145 0.2820 0.2982 REMARK 3 10 1.9473 - 1.8801 0.96 2664 135 0.3149 0.3502 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1576 REMARK 3 ANGLE : 0.972 2127 REMARK 3 CHIRALITY : 0.055 216 REMARK 3 PLANARITY : 0.007 275 REMARK 3 DIHEDRAL : 15.361 929 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 190:214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1677 -17.1047 2.1580 REMARK 3 T TENSOR REMARK 3 T11: 0.1436 T22: 0.1679 REMARK 3 T33: 0.1654 T12: 0.0254 REMARK 3 T13: -0.0040 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 0.2273 L22: 0.3123 REMARK 3 L33: 0.5071 L12: 0.2248 REMARK 3 L13: 0.1666 L23: 0.1299 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: 0.1344 S13: -0.0772 REMARK 3 S21: -0.0532 S22: 0.1347 S23: -0.0181 REMARK 3 S31: 0.2054 S32: 0.3059 S33: 0.0877 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 215:224 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9378 -0.5941 0.6916 REMARK 3 T TENSOR REMARK 3 T11: 0.1534 T22: 0.1420 REMARK 3 T33: 0.1907 T12: 0.0474 REMARK 3 T13: -0.0077 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.0618 L22: 0.0292 REMARK 3 L33: 0.1515 L12: -0.0049 REMARK 3 L13: 0.0064 L23: -0.0305 REMARK 3 S TENSOR REMARK 3 S11: -0.0618 S12: 0.0953 S13: -0.0917 REMARK 3 S21: -0.0401 S22: 0.0201 S23: 0.2115 REMARK 3 S31: -0.1449 S32: 0.0207 S33: -0.0524 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 225:239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6655 1.1085 -3.0646 REMARK 3 T TENSOR REMARK 3 T11: 0.1237 T22: 0.1217 REMARK 3 T33: 0.1247 T12: 0.0012 REMARK 3 T13: -0.0269 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.0143 L22: 0.1542 REMARK 3 L33: 0.1140 L12: 0.0277 REMARK 3 L13: -0.0320 L23: -0.0221 REMARK 3 S TENSOR REMARK 3 S11: -0.0733 S12: -0.0539 S13: -0.0240 REMARK 3 S21: -0.1513 S22: 0.0156 S23: 0.0666 REMARK 3 S31: -0.0568 S32: 0.0346 S33: -0.0214 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 240:265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8800 -0.3383 8.2611 REMARK 3 T TENSOR REMARK 3 T11: 0.1633 T22: 0.1536 REMARK 3 T33: 0.1384 T12: -0.0232 REMARK 3 T13: 0.0096 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.1485 L22: 0.0647 REMARK 3 L33: 0.1132 L12: -0.0503 REMARK 3 L13: -0.1169 L23: 0.0074 REMARK 3 S TENSOR REMARK 3 S11: -0.1301 S12: -0.0248 S13: 0.1100 REMARK 3 S21: 0.1277 S22: 0.0362 S23: -0.1459 REMARK 3 S31: -0.1265 S32: 0.2645 S33: -0.0022 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 266:279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3890 3.8877 4.2761 REMARK 3 T TENSOR REMARK 3 T11: 0.1428 T22: 0.1006 REMARK 3 T33: 0.1895 T12: 0.0065 REMARK 3 T13: -0.0295 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.1000 L22: 0.1553 REMARK 3 L33: 0.1466 L12: 0.0211 REMARK 3 L13: -0.0926 L23: -0.0609 REMARK 3 S TENSOR REMARK 3 S11: -0.0452 S12: -0.1444 S13: -0.0274 REMARK 3 S21: 0.1016 S22: -0.0045 S23: 0.1854 REMARK 3 S31: -0.1714 S32: 0.0447 S33: -0.0172 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 280:309 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3393 -2.4161 14.1873 REMARK 3 T TENSOR REMARK 3 T11: 0.2033 T22: 0.1145 REMARK 3 T33: 0.1316 T12: 0.0394 REMARK 3 T13: 0.0227 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 0.3973 L22: 0.0618 REMARK 3 L33: 0.1114 L12: 0.0440 REMARK 3 L13: 0.0899 L23: -0.0482 REMARK 3 S TENSOR REMARK 3 S11: 0.0466 S12: -0.1349 S13: -0.0254 REMARK 3 S21: -0.0604 S22: -0.0051 S23: 0.0145 REMARK 3 S31: -0.2489 S32: -0.1388 S33: 0.0367 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 310:328 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2532 -12.8262 18.9403 REMARK 3 T TENSOR REMARK 3 T11: 0.1759 T22: 0.1554 REMARK 3 T33: 0.1613 T12: 0.0125 REMARK 3 T13: 0.0206 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.0614 L22: 0.1632 REMARK 3 L33: 0.0851 L12: 0.1034 REMARK 3 L13: 0.0352 L23: 0.0756 REMARK 3 S TENSOR REMARK 3 S11: 0.0999 S12: -0.0377 S13: -0.0975 REMARK 3 S21: 0.2391 S22: -0.0356 S23: -0.0222 REMARK 3 S31: 0.0693 S32: -0.0311 S33: 0.0115 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 329:348 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5955 -12.5721 0.7106 REMARK 3 T TENSOR REMARK 3 T11: 0.1207 T22: 0.1821 REMARK 3 T33: 0.1425 T12: -0.0140 REMARK 3 T13: 0.0178 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.1050 L22: 0.3366 REMARK 3 L33: 0.0559 L12: -0.0535 REMARK 3 L13: 0.0321 L23: -0.0510 REMARK 3 S TENSOR REMARK 3 S11: -0.0665 S12: 0.1292 S13: 0.0650 REMARK 3 S21: -0.0092 S22: 0.0687 S23: 0.1800 REMARK 3 S31: 0.0278 S32: -0.0750 S33: 0.0113 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN A AND RESID 349:361 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2777 -19.6654 -8.2855 REMARK 3 T TENSOR REMARK 3 T11: 0.1995 T22: 0.2546 REMARK 3 T33: 0.1688 T12: -0.0488 REMARK 3 T13: 0.0108 T23: -0.0379 REMARK 3 L TENSOR REMARK 3 L11: 0.0617 L22: 0.1726 REMARK 3 L33: 0.0460 L12: -0.0615 REMARK 3 L13: -0.0418 L23: -0.0063 REMARK 3 S TENSOR REMARK 3 S11: -0.1246 S12: 0.2083 S13: -0.0951 REMARK 3 S21: 0.0252 S22: 0.1949 S23: 0.0504 REMARK 3 S31: 0.0932 S32: 0.1961 S33: 0.0055 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN A AND RESID 362:378 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1145 -20.5058 11.9129 REMARK 3 T TENSOR REMARK 3 T11: 0.1814 T22: 0.1844 REMARK 3 T33: 0.1517 T12: -0.0118 REMARK 3 T13: -0.0068 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.0655 L22: 0.0280 REMARK 3 L33: 0.0217 L12: 0.0373 REMARK 3 L13: -0.0241 L23: -0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0600 S12: -0.0463 S13: -0.2494 REMARK 3 S21: 0.0782 S22: -0.1144 S23: 0.0528 REMARK 3 S31: 0.1611 S32: -0.2220 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13173 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.20700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.16800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CQD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, MES-NAOH, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.31500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.21000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.02000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.21000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.31500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.02000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 186 REMARK 465 GLU A 187 REMARK 465 ILE A 188 REMARK 465 LEU A 189 REMARK 465 LEU A 379 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 190 CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 225 CG OD1 ND2 REMARK 480 ARG A 306 NE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 337 OE1 GLU A 340 1.57 REMARK 500 HE21 GLN A 298 O HOH A 507 1.60 REMARK 500 O HOH A 571 O HOH A 590 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 210 36.66 -164.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 253 ND1 REMARK 620 2 CYS A 284 SG 112.9 REMARK 620 3 CYS A 289 SG 109.3 117.2 REMARK 620 4 HOH A 510 O 103.8 103.6 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 260 OD1 REMARK 620 2 ASP A 314 O 43.2 REMARK 620 3 PGE A 404 O1 103.4 116.5 REMARK 620 4 PGE A 404 O2 110.2 152.6 70.3 REMARK 620 5 PGE A 405 O4 81.0 67.6 52.5 122.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CQD RELATED DB: PDB REMARK 900 RELATED ID: 5CQH RELATED DB: PDB REMARK 900 RELATED ID: 5CQK RELATED DB: PDB DBREF 5CQK A 187 378 UNP Q9UH17 ABC3B_HUMAN 187 378 SEQADV 5CQK MET A 186 UNP Q9UH17 INITIATING METHIONINE SEQADV 5CQK SER A 200 UNP Q9UH17 PHE 200 ENGINEERED MUTATION SEQADV 5CQK SER A 228 UNP Q9UH17 TRP 228 ENGINEERED MUTATION SEQADV 5CQK LYS A 230 UNP Q9UH17 LEU 230 ENGINEERED MUTATION SEQADV 5CQK A UNP Q9UH17 ALA 242 DELETION SEQADV 5CQK A UNP Q9UH17 LYS 243 DELETION SEQADV 5CQK A UNP Q9UH17 ASN 244 DELETION SEQADV 5CQK A UNP Q9UH17 LEU 245 DELETION SEQADV 5CQK A UNP Q9UH17 LEU 246 DELETION SEQADV 5CQK A UNP Q9UH17 CYS 247 DELETION SEQADV 5CQK A UNP Q9UH17 GLY 248 DELETION SEQADV 5CQK A UNP Q9UH17 PHE 249 DELETION SEQADV 5CQK SER A 250 UNP Q9UH17 TYR 250 ENGINEERED MUTATION SEQADV 5CQK LYS A 308 UNP Q9UH17 PHE 308 ENGINEERED MUTATION SEQADV 5CQK LEU A 379 UNP Q9UH17 EXPRESSION TAG SEQRES 1 A 186 MET GLU ILE LEU ARG TYR LEU MET ASP PRO ASP THR PHE SEQRES 2 A 186 THR SER ASN PHE ASN ASN ASP PRO LEU VAL LEU ARG ARG SEQRES 3 A 186 ARG GLN THR TYR LEU CYS TYR GLU VAL GLU ARG LEU ASP SEQRES 4 A 186 ASN GLY THR SER VAL LYS MET ASP GLN HIS MET GLY PHE SEQRES 5 A 186 LEU CYS ASN GLU SER GLY ARG HIS ALA GLU LEU ARG PHE SEQRES 6 A 186 LEU ASP LEU VAL PRO SER LEU GLN LEU ASP PRO ALA GLN SEQRES 7 A 186 ILE TYR ARG VAL THR TRP PHE ILE SER TRP SER PRO CYS SEQRES 8 A 186 PHE SER TRP GLY CYS ALA GLY GLU VAL ARG ALA PHE LEU SEQRES 9 A 186 GLN GLU ASN THR HIS VAL ARG LEU ARG ILE LYS ALA ALA SEQRES 10 A 186 ARG ILE TYR ASP TYR ASP PRO LEU TYR LYS GLU ALA LEU SEQRES 11 A 186 GLN MET LEU ARG ASP ALA GLY ALA GLN VAL SER ILE MET SEQRES 12 A 186 THR TYR ASP GLU PHE GLU TYR CYS TRP ASP THR PHE VAL SEQRES 13 A 186 TYR ARG GLN GLY CYS PRO PHE GLN PRO TRP ASP GLY LEU SEQRES 14 A 186 GLU GLU HIS SER GLN ALA LEU SER GLY ARG LEU ARG ALA SEQRES 15 A 186 ILE LEU GLN LEU HET ZN A 401 1 HET GOL A 402 14 HET GOL A 403 14 HET PGE A 404 24 HET PGE A 405 24 HET NA A 406 1 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 PGE 2(C6 H14 O4) FORMUL 7 NA NA 1+ FORMUL 8 HOH *93(H2 O) HELIX 1 AA1 ASP A 194 ASN A 203 1 10 HELIX 2 AA2 ASP A 232 MET A 235 5 4 HELIX 3 AA3 HIS A 253 VAL A 262 1 10 HELIX 4 AA4 PRO A 263 GLN A 266 5 4 HELIX 5 AA5 GLY A 288 ASN A 300 1 13 HELIX 6 AA6 LEU A 318 ALA A 329 1 12 HELIX 7 AA7 THR A 337 VAL A 349 1 13 HELIX 8 AA8 GLY A 361 GLN A 378 1 18 SHEET 1 AA1 3 THR A 227 LYS A 230 0 SHEET 2 AA1 3 TYR A 215 ASP A 224 -1 N ARG A 222 O VAL A 229 SHEET 3 AA1 3 GLY A 236 CYS A 239 -1 O GLY A 236 N TYR A 218 SHEET 1 AA2 5 THR A 227 LYS A 230 0 SHEET 2 AA2 5 TYR A 215 ASP A 224 -1 N ARG A 222 O VAL A 229 SHEET 3 AA2 5 TYR A 273 TRP A 281 -1 O PHE A 278 N CYS A 217 SHEET 4 AA2 5 VAL A 303 ARG A 311 1 O ARG A 304 N VAL A 275 SHEET 5 AA2 5 GLN A 332 ILE A 335 1 O GLN A 332 N ILE A 307 LINK ND1 HIS A 253 ZN ZN A 401 1555 1555 2.07 LINK OD1 ASP A 260 NA NA A 406 1555 1555 2.55 LINK SG CYS A 284 ZN ZN A 401 1555 1555 2.36 LINK SG CYS A 289 ZN ZN A 401 1555 1555 2.30 LINK O ASP A 314 NA NA A 406 1555 3545 2.67 LINK ZN ZN A 401 O HOH A 510 1555 1555 2.13 LINK O1 PGE A 404 NA NA A 406 1555 1555 2.85 LINK O2 PGE A 404 NA NA A 406 1555 1555 2.77 LINK O4 PGE A 405 NA NA A 406 1555 1555 3.02 SITE 1 AC1 4 HIS A 253 CYS A 284 CYS A 289 HOH A 510 SITE 1 AC2 10 ARG A 211 ARG A 212 GLN A 213 THR A 214 SITE 2 AC2 10 ASN A 240 HIS A 253 TYR A 313 HOH A 504 SITE 3 AC2 10 HOH A 505 HOH A 510 SITE 1 AC3 11 TYR A 215 PHE A 237 CYS A 239 THR A 337 SITE 2 AC3 11 TYR A 338 ASP A 339 HOH A 503 HOH A 556 SITE 3 AC3 11 HOH A 558 HOH A 562 HOH A 570 SITE 1 AC4 7 ARG A 252 LEU A 259 ASP A 260 ASP A 314 SITE 2 AC4 7 TYR A 315 PGE A 405 NA A 406 SITE 1 AC5 9 PRO A 206 ARG A 252 LEU A 259 ASP A 260 SITE 2 AC5 9 GLU A 292 ASP A 314 TYR A 315 PGE A 404 SITE 3 AC5 9 NA A 406 SITE 1 AC6 4 ASP A 260 ASP A 314 PGE A 404 PGE A 405 CRYST1 50.630 54.040 66.420 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019751 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015056 0.00000