HEADER TRANSPORT PROTEIN 22-JUL-15 5CR9 TITLE CRYSTAL STRUCTURE OF ABC-TYPE FE3+-HYDROXAMATE TRANSPORT SYSTEM FROM TITLE 2 SACCHAROMONOSPORA VIRIDIS DSM 43017 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC-TYPE FE3+-HYDROXAMATE TRANSPORT SYSTEM, PERIPLASMIC COMPND 3 COMPONENT; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMONOSPORA VIRIDIS (STRAIN ATCC 15386 / SOURCE 3 DSM 43017 / JCM 3036 / NBRC 12207 / P101); SOURCE 4 ORGANISM_TAXID: 471857; SOURCE 5 STRAIN: ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101; SOURCE 6 GENE: SVIR_21280; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INORGANIC ION TRANSPORT, TROA-LIKE, ABC TRANSPORT OF FERRIC KEYWDS 2 SIDEROPHORES AND METAL IONS SUCH AS MN2+, FE3+, CU2+ AND/OR ZN2+, KEYWDS 3 STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS, MCSG, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,M.CUFF,J.MACK,M.ENDRES,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 25-DEC-19 5CR9 1 REMARK REVDAT 2 20-SEP-17 5CR9 1 REMARK REVDAT 1 12-AUG-15 5CR9 0 JRNL AUTH B.NOCEK,M.CUFF,J.MACK,M.ENDRES,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF ABC-TYPE FE3+-HYDROXAMATE TRANSPORT JRNL TITL 2 SYSTEM FROM SACCHAROMONOSPORA VIRIDIS DSM 43017 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1888 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.090 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 31765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3203 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5786 - 4.8254 0.97 2604 81 0.1848 0.1935 REMARK 3 2 4.8254 - 3.8313 1.00 2633 118 0.1259 0.1330 REMARK 3 3 3.8313 - 3.3473 1.00 2617 149 0.1285 0.1588 REMARK 3 4 3.3473 - 3.0414 1.00 2609 161 0.1536 0.1629 REMARK 3 5 3.0414 - 2.8235 1.00 2576 150 0.1524 0.2126 REMARK 3 6 2.8235 - 2.6571 1.00 2659 136 0.1423 0.1933 REMARK 3 7 2.6571 - 2.5240 1.00 2603 135 0.1373 0.1520 REMARK 3 8 2.5240 - 2.4142 1.00 2639 135 0.1374 0.1843 REMARK 3 9 2.4142 - 2.3213 1.00 2615 162 0.1368 0.1563 REMARK 3 10 2.3213 - 2.2412 1.00 2596 150 0.1287 0.1752 REMARK 3 11 2.2412 - 2.1711 1.00 2641 130 0.1279 0.1791 REMARK 3 12 2.1711 - 2.1090 1.00 2601 150 0.1287 0.1414 REMARK 3 13 2.1090 - 2.0535 1.00 2650 137 0.1294 0.1280 REMARK 3 14 2.0535 - 2.0034 1.00 2634 131 0.1309 0.1572 REMARK 3 15 2.0034 - 1.9579 1.00 2577 166 0.1345 0.1897 REMARK 3 16 1.9579 - 1.9162 1.00 2661 123 0.1406 0.1655 REMARK 3 17 1.9162 - 1.8779 1.00 2642 128 0.1534 0.1763 REMARK 3 18 1.8779 - 1.8425 1.00 2604 154 0.1560 0.1721 REMARK 3 19 1.8425 - 1.8096 1.00 2631 146 0.1628 0.1879 REMARK 3 20 1.8096 - 1.7789 1.00 2587 145 0.1762 0.2307 REMARK 3 21 1.7789 - 1.7502 1.00 2634 135 0.1883 0.2356 REMARK 3 22 1.7502 - 1.7233 1.00 2614 138 0.2072 0.2361 REMARK 3 23 1.7233 - 1.6979 0.93 2472 143 0.2210 0.2568 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2294 REMARK 3 ANGLE : 1.268 3147 REMARK 3 CHIRALITY : 0.051 372 REMARK 3 PLANARITY : 0.007 425 REMARK 3 DIHEDRAL : 13.222 849 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7597 10.5053 33.8919 REMARK 3 T TENSOR REMARK 3 T11: 0.0934 T22: 0.1024 REMARK 3 T33: 0.1232 T12: 0.0014 REMARK 3 T13: 0.0030 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.8390 L22: 1.2370 REMARK 3 L33: 0.6991 L12: -0.2721 REMARK 3 L13: 0.0291 L23: -0.3889 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: 0.0235 S13: 0.0462 REMARK 3 S21: 0.0394 S22: -0.0493 S23: -0.1317 REMARK 3 S31: 0.0119 S32: 0.0745 S33: -0.0007 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5874 9.6292 34.5348 REMARK 3 T TENSOR REMARK 3 T11: 0.1008 T22: 0.1230 REMARK 3 T33: 0.1607 T12: -0.0014 REMARK 3 T13: -0.0001 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.5476 L22: 0.4407 REMARK 3 L33: 0.5178 L12: -0.0714 REMARK 3 L13: 0.4044 L23: -0.2516 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: -0.0420 S13: -0.0601 REMARK 3 S21: -0.0449 S22: 0.0055 S23: 0.0951 REMARK 3 S31: -0.1270 S32: -0.1228 S33: 0.0072 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9669 14.2822 58.5803 REMARK 3 T TENSOR REMARK 3 T11: 0.1759 T22: 0.2439 REMARK 3 T33: 0.1341 T12: 0.0279 REMARK 3 T13: 0.0283 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.0592 L22: 0.5563 REMARK 3 L33: 0.4041 L12: 0.0246 REMARK 3 L13: -0.1481 L23: -0.0267 REMARK 3 S TENSOR REMARK 3 S11: -0.2638 S12: -0.4894 S13: -0.0757 REMARK 3 S21: 0.3477 S22: 0.1347 S23: -0.0213 REMARK 3 S31: -0.0655 S32: 0.1027 S33: -0.0850 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3206 13.6890 56.4974 REMARK 3 T TENSOR REMARK 3 T11: 0.1802 T22: 0.1770 REMARK 3 T33: 0.1109 T12: 0.0121 REMARK 3 T13: 0.0141 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.6309 L22: 0.5482 REMARK 3 L33: 1.9020 L12: -0.2837 REMARK 3 L13: 0.2003 L23: 0.1692 REMARK 3 S TENSOR REMARK 3 S11: -0.0478 S12: -0.1991 S13: -0.0235 REMARK 3 S21: 0.1147 S22: 0.0455 S23: 0.0282 REMARK 3 S31: -0.1289 S32: -0.1281 S33: 0.0011 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE IDENTITY OF METAL ATOM (MN 2+) WAS REMARK 3 DETERMINED BASED ON THE DISTANCES TO DONOR ATOMS, COORDINATION REMARK 3 NUMBER. THE LIGAND IDENTITY WAS GUESSED BASED ON THE SHAPE OF REMARK 3 THE DENSITY REMARK 4 REMARK 4 5CR9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33513 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 37.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.66900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 % MPD, 0.1 M TRIS PH 8.00, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.84500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.42750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.84500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.42750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 26 REMARK 465 PRO A 27 REMARK 465 VAL A 28 REMARK 465 ALA A 29 REMARK 465 THR A 30 REMARK 465 GLY A 31 REMARK 465 GLU A 32 REMARK 465 ARG A 33 REMARK 465 PRO A 34 REMARK 465 THR A 35 REMARK 465 ALA A 36 REMARK 465 SER A 37 REMARK 465 ALA A 38 REMARK 465 GLY A 39 REMARK 465 ALA A 208 REMARK 465 VAL A 209 REMARK 465 GLY A 210 REMARK 465 ARG A 211 REMARK 465 PRO A 212 REMARK 465 ASP A 335 REMARK 465 SER A 336 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 40 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 206 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 189 O HOH A 601 1.98 REMARK 500 O HOH A 849 O HOH A 860 2.08 REMARK 500 O HOH A 838 O HOH A 878 2.11 REMARK 500 O HOH A 774 O HOH A 862 2.11 REMARK 500 N HIS A 40 O HOH A 602 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 852 O HOH A 853 3556 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 279 -161.93 -161.75 REMARK 500 THR A 314 -59.83 -122.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HOH A 704 O 108.2 REMARK 620 3 GLU A 504 O 169.0 77.9 REMARK 620 4 GLU A 504 N 97.1 90.3 73.4 REMARK 620 5 GLU A 504 OE1 82.6 151.1 96.3 115.4 REMARK 620 6 HOH A 759 O 87.6 71.1 103.2 161.4 83.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLU A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC110995 RELATED DB: TARGETTRACK DBREF 5CR9 A 26 336 UNP C7MWN7 C7MWN7_SACVD 26 336 SEQRES 1 A 311 GLY PRO VAL ALA THR GLY GLU ARG PRO THR ALA SER ALA SEQRES 2 A 311 GLY HIS PHE PRO LEU THR ILE THR ASN CYS GLY VAL ASP SEQRES 3 A 311 VAL THR PHE ASP GLY PRO PRO GLU ARG ILE ILE LEU LEU SEQRES 4 A 311 GLU SER ALA PRO VAL ALA THR MSE ARG ALA LEU GLY VAL SEQRES 5 A 311 LEU ASP SER VAL VAL LEU ARG ALA GLY ALA PHE PRO PRO SEQRES 6 A 311 GLU TYR TYR ASP ALA GLU THR ASN ALA ALA LEU ARG ALA SEQRES 7 A 311 ILE PRO SER LEU GLY GLU GLU LEU ASP SER SER GLY HIS SEQRES 8 A 311 LEU GLN ILE SER GLU GLU VAL ILE ILE ALA GLN GLN PRO SEQRES 9 A 311 ASP LEU VAL LEU GLY LEU PRO ASP GLY VAL THR ARG GLU SEQRES 10 A 311 GLY LEU GLU ALA VAL GLY ILE ASN VAL LEU VAL GLN PRO SEQRES 11 A 311 THR MSE CYS PRO GLY GLY VAL GLY ALA THR THR PHE ASP SEQRES 12 A 311 ASP VAL TYR GLU GLN ILE ASN THR TYR GLY ARG LEU PHE SEQRES 13 A 311 ASP ARG GLN ASP ARG ALA ALA GLU LEU VAL ALA SER LEU SEQRES 14 A 311 ARG GLN ARG VAL ALA ALA VAL GLU LYS ALA VAL GLU LYS SEQRES 15 A 311 ALA VAL GLY ARG PRO ARG ARG SER ALA ALA VAL LEU TYR SEQRES 16 A 311 PRO THR ILE GLY GLY GLY VAL GLY TYR ALA TYR GLY ASN SEQRES 17 A 311 GLU SER MSE ALA HIS PRO GLN LEU GLU SER ALA GLY PHE SEQRES 18 A 311 THR ASN VAL TYR ALA ASP VAL ASP GLU ARG VAL PHE GLU SEQRES 19 A 311 VAL THR LEU GLU ASP VAL LEU GLU GLN ASP PRO ASP VAL SEQRES 20 A 311 LEU VAL LEU LEU HIS VAL ASP GLY ASP PRO ASP ALA VAL SEQRES 21 A 311 LYS ASP ALA VAL VAL ASN LEU PRO GLY ALA ASP ALA LEU SEQRES 22 A 311 THR ALA VAL ARG ASN ASP ASP ILE LEU VAL GLN LEU PHE SEQRES 23 A 311 ASN PHE THR GLU PRO PRO THR PRO LEU SER VAL ASP GLY SEQRES 24 A 311 LEU GLU ARG ILE HIS GLU THR PHE GLY ALA ASP SER MODRES 5CR9 MSE A 72 MET MODIFIED RESIDUE MODRES 5CR9 MSE A 157 MET MODIFIED RESIDUE MODRES 5CR9 MSE A 236 MET MODIFIED RESIDUE HET MSE A 72 17 HET MSE A 157 17 HET MSE A 236 17 HET MN A 501 1 HET GOL A 502 14 HET GOL A 503 14 HET GLU A 504 18 HETNAM MSE SELENOMETHIONINE HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETNAM GLU GLUTAMIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 MN MN 2+ FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 GLU C5 H9 N O4 FORMUL 6 HOH *278(H2 O) HELIX 1 AA1 PRO A 68 GLY A 76 1 9 HELIX 2 AA2 VAL A 77 ASP A 79 5 3 HELIX 3 AA3 PRO A 89 TYR A 93 5 5 HELIX 4 AA4 ASP A 94 ALA A 103 1 10 HELIX 5 AA5 SER A 120 ALA A 126 1 7 HELIX 6 AA6 THR A 140 ALA A 146 1 7 HELIX 7 AA7 GLN A 154 CYS A 158 5 5 HELIX 8 AA8 THR A 166 ASP A 182 1 17 HELIX 9 AA9 ARG A 183 LYS A 207 1 25 HELIX 10 AB1 MSE A 236 ALA A 244 1 9 HELIX 11 AB2 THR A 261 ASP A 269 1 9 HELIX 12 AB3 ASP A 281 ASN A 291 1 11 HELIX 13 AB4 GLY A 294 ALA A 297 5 4 HELIX 14 AB5 LEU A 298 ASN A 303 1 6 HELIX 15 AB6 ASN A 312 THR A 314 5 3 HELIX 16 AB7 THR A 318 GLY A 333 1 16 SHEET 1 AA1 2 LEU A 43 ASN A 47 0 SHEET 2 AA1 2 VAL A 50 PHE A 54 -1 O VAL A 52 N ILE A 45 SHEET 1 AA2 4 VAL A 81 ARG A 84 0 SHEET 2 AA2 4 ILE A 61 LEU A 63 1 N ILE A 61 O VAL A 82 SHEET 3 AA2 4 LEU A 131 LEU A 133 1 O LEU A 133 N ILE A 62 SHEET 4 AA2 4 ASN A 150 LEU A 152 1 O LEU A 152 N VAL A 132 SHEET 1 AA3 4 THR A 247 ASN A 248 0 SHEET 2 AA3 4 SER A 215 TYR A 220 1 N ALA A 216 O THR A 247 SHEET 3 AA3 4 TYR A 229 TYR A 231 -1 O TYR A 229 N TYR A 220 SHEET 4 AA3 4 VAL A 257 GLU A 259 -1 O PHE A 258 N ALA A 230 SHEET 1 AA4 4 THR A 247 ASN A 248 0 SHEET 2 AA4 4 SER A 215 TYR A 220 1 N ALA A 216 O THR A 247 SHEET 3 AA4 4 VAL A 272 HIS A 277 1 O LEU A 276 N LEU A 219 SHEET 4 AA4 4 ILE A 306 LEU A 310 1 O LEU A 307 N LEU A 275 SSBOND 1 CYS A 48 CYS A 158 1555 1555 2.05 LINK C THR A 71 N MSE A 72 1555 1555 1.34 LINK C MSE A 72 N ARG A 73 1555 1555 1.34 LINK NE2 HIS A 116 MN MN A 501 1555 1555 2.30 LINK C THR A 156 N MSE A 157 1555 1555 1.34 LINK C MSE A 157 N CYS A 158 1555 1555 1.33 LINK C SER A 235 N MSE A 236 1555 1555 1.33 LINK C MSE A 236 N ALA A 237 1555 1555 1.33 LINK MN MN A 501 O HOH A 704 1555 1555 2.33 LINK MN MN A 501 O GLU A 504 1555 1555 2.08 LINK MN MN A 501 N GLU A 504 1555 1555 2.56 LINK MN MN A 501 OE1 GLU A 504 1555 1555 2.12 LINK MN MN A 501 O HOH A 759 1555 1555 2.31 CISPEP 1 PHE A 41 PRO A 42 0 -6.46 CISPEP 2 GLU A 315 PRO A 316 0 -9.43 SITE 1 AC1 4 HIS A 116 GLU A 504 HOH A 704 HOH A 759 SITE 1 AC2 5 ARG A 73 GLU A 91 TYR A 92 ASP A 323 SITE 2 AC2 5 HOH A 788 SITE 1 AC3 10 THR A 46 ASN A 47 CYS A 48 GLY A 49 SITE 2 AC3 10 ARG A 73 ALA A 74 CYS A 158 ARG A 186 SITE 3 AC3 10 HOH A 669 HOH A 785 SITE 1 AC4 10 SER A 114 HIS A 116 TYR A 229 TYR A 231 SITE 2 AC4 10 ARG A 256 VAL A 257 PHE A 311 MN A 501 SITE 3 AC4 10 HOH A 704 HOH A 759 CRYST1 83.690 56.855 62.457 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011949 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017589 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016011 0.00000