data_5CUZ # _entry.id 5CUZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5CUZ WWPDB D_1000212217 # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 5CV0 _pdbx_database_related.db_name PDB _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5CUZ _pdbx_database_status.recvd_initial_deposition_date 2015-07-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yamada, K.' 1 'Gherasim, C.' 2 'Banerjee, R.' 3 'Koutmos, M.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 290 _citation.language ? _citation.page_first 29155 _citation.page_last 29166 _citation.title 'Structure of Human B12 Trafficking Protein CblD Reveals Molecular Mimicry and Identifies a New Subfamily of Nitro-FMN Reductases.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1074/jbc.M115.682435 _citation.pdbx_database_id_PubMed 26364851 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Yamada, K.' 1 primary 'Gherasim, C.' 2 primary 'Banerjee, R.' 3 primary 'Koutmos, M.' 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5CUZ _cell.details ? _cell.formula_units_Z ? _cell.length_a 65.341 _cell.length_a_esd ? _cell.length_b 66.226 _cell.length_b_esd ? _cell.length_c 71.885 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CUZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Methylmalonic aciduria and homocystinuria type D protein, mitochondrial' 22074.982 1 ? ? 'UNP residues 108-296' ? 2 water nat water 18.015 21 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GH(MSE)SSERHEFV(MSE)AQYVNEFQGNDAPVEQEINSAETYFESARVECAIQTCPELLRKDFESLFPEVANGKL (MSE)ILTVTQKTKND(MSE)TVWSEEVEIEREVLLEKFINGAKEICYALRAEGYWADFIDPSSGLAFFGPYTNNTLFET DERYRHLGFSVDDLGCCKVIRHSLWGTHVVVGSIFTNATPDSHI(MSE)KKLSGN ; _entity_poly.pdbx_seq_one_letter_code_can ;GHMSSERHEFVMAQYVNEFQGNDAPVEQEINSAETYFESARVECAIQTCPELLRKDFESLFPEVANGKLMILTVTQKTKN DMTVWSEEVEIEREVLLEKFINGAKEICYALRAEGYWADFIDPSSGLAFFGPYTNNTLFETDERYRHLGFSVDDLGCCKV IRHSLWGTHVVVGSIFTNATPDSHIMKKLSGN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MSE n 1 4 SER n 1 5 SER n 1 6 GLU n 1 7 ARG n 1 8 HIS n 1 9 GLU n 1 10 PHE n 1 11 VAL n 1 12 MSE n 1 13 ALA n 1 14 GLN n 1 15 TYR n 1 16 VAL n 1 17 ASN n 1 18 GLU n 1 19 PHE n 1 20 GLN n 1 21 GLY n 1 22 ASN n 1 23 ASP n 1 24 ALA n 1 25 PRO n 1 26 VAL n 1 27 GLU n 1 28 GLN n 1 29 GLU n 1 30 ILE n 1 31 ASN n 1 32 SER n 1 33 ALA n 1 34 GLU n 1 35 THR n 1 36 TYR n 1 37 PHE n 1 38 GLU n 1 39 SER n 1 40 ALA n 1 41 ARG n 1 42 VAL n 1 43 GLU n 1 44 CYS n 1 45 ALA n 1 46 ILE n 1 47 GLN n 1 48 THR n 1 49 CYS n 1 50 PRO n 1 51 GLU n 1 52 LEU n 1 53 LEU n 1 54 ARG n 1 55 LYS n 1 56 ASP n 1 57 PHE n 1 58 GLU n 1 59 SER n 1 60 LEU n 1 61 PHE n 1 62 PRO n 1 63 GLU n 1 64 VAL n 1 65 ALA n 1 66 ASN n 1 67 GLY n 1 68 LYS n 1 69 LEU n 1 70 MSE n 1 71 ILE n 1 72 LEU n 1 73 THR n 1 74 VAL n 1 75 THR n 1 76 GLN n 1 77 LYS n 1 78 THR n 1 79 LYS n 1 80 ASN n 1 81 ASP n 1 82 MSE n 1 83 THR n 1 84 VAL n 1 85 TRP n 1 86 SER n 1 87 GLU n 1 88 GLU n 1 89 VAL n 1 90 GLU n 1 91 ILE n 1 92 GLU n 1 93 ARG n 1 94 GLU n 1 95 VAL n 1 96 LEU n 1 97 LEU n 1 98 GLU n 1 99 LYS n 1 100 PHE n 1 101 ILE n 1 102 ASN n 1 103 GLY n 1 104 ALA n 1 105 LYS n 1 106 GLU n 1 107 ILE n 1 108 CYS n 1 109 TYR n 1 110 ALA n 1 111 LEU n 1 112 ARG n 1 113 ALA n 1 114 GLU n 1 115 GLY n 1 116 TYR n 1 117 TRP n 1 118 ALA n 1 119 ASP n 1 120 PHE n 1 121 ILE n 1 122 ASP n 1 123 PRO n 1 124 SER n 1 125 SER n 1 126 GLY n 1 127 LEU n 1 128 ALA n 1 129 PHE n 1 130 PHE n 1 131 GLY n 1 132 PRO n 1 133 TYR n 1 134 THR n 1 135 ASN n 1 136 ASN n 1 137 THR n 1 138 LEU n 1 139 PHE n 1 140 GLU n 1 141 THR n 1 142 ASP n 1 143 GLU n 1 144 ARG n 1 145 TYR n 1 146 ARG n 1 147 HIS n 1 148 LEU n 1 149 GLY n 1 150 PHE n 1 151 SER n 1 152 VAL n 1 153 ASP n 1 154 ASP n 1 155 LEU n 1 156 GLY n 1 157 CYS n 1 158 CYS n 1 159 LYS n 1 160 VAL n 1 161 ILE n 1 162 ARG n 1 163 HIS n 1 164 SER n 1 165 LEU n 1 166 TRP n 1 167 GLY n 1 168 THR n 1 169 HIS n 1 170 VAL n 1 171 VAL n 1 172 VAL n 1 173 GLY n 1 174 SER n 1 175 ILE n 1 176 PHE n 1 177 THR n 1 178 ASN n 1 179 ALA n 1 180 THR n 1 181 PRO n 1 182 ASP n 1 183 SER n 1 184 HIS n 1 185 ILE n 1 186 MSE n 1 187 LYS n 1 188 LYS n 1 189 LEU n 1 190 SER n 1 191 GLY n 1 192 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 192 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MMADHC, C2orf25, CL25022, HSPC161, My011' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Bl21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET28b(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MMAD_HUMAN _struct_ref.pdbx_db_accession Q9H3L0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SSERHEFVMAQYVNEFQGNDAPVEQEINSAETYFESARVECAIQTCPELLRKDFESLFPEVANGKLMILTVTQKTKNDMT VWSEEVEIEREVLLEKFINGAKEICYALRAEGYWADFIDPSSGLAFFGPYTNNTLFETDERYRHLGFSVDDLGCCKVIRH SLWGTHVVVGSIFTNATPDSHIMKKLSGN ; _struct_ref.pdbx_align_begin 108 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5CUZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 192 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9H3L0 _struct_ref_seq.db_align_beg 108 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 296 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 108 _struct_ref_seq.pdbx_auth_seq_align_end 296 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5CUZ GLY A 1 ? UNP Q9H3L0 ? ? 'expression tag' 105 1 1 5CUZ HIS A 2 ? UNP Q9H3L0 ? ? 'expression tag' 106 2 1 5CUZ MSE A 3 ? UNP Q9H3L0 ? ? 'expression tag' 107 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5CUZ _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.8 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 32.2 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20 % PEG3350, 0.1M Tris-HCl, pH 7.5, 0.185 M MgCl2, 0.12 M NaF' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details 'K-B pair of biomorph mirrors for vertical and horizontal focusing' _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-03-23 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979475 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979475 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5CUZ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.31 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6667 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.0 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.31 _reflns_shell.d_res_low 2.39 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 70.4 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.359 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -2.87 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 2.45 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.42 _refine.B_iso_max ? _refine.B_iso_mean 45.151 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.942 _refine.correlation_coeff_Fo_to_Fc_free 0.901 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5CUZ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.31 _refine.ls_d_res_low 48.71 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6338 _refine.ls_number_reflns_R_free 320 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 93.83 _refine.ls_percent_reflns_R_free 4.8 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.21101 _refine.ls_R_factor_R_free 0.26266 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.20831 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.521 _refine.pdbx_overall_ESU_R_Free 0.284 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 8.472 _refine.overall_SU_ML 0.200 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 1266 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 21 _refine_hist.number_atoms_total 1287 _refine_hist.d_res_high 2.31 _refine_hist.d_res_low 48.71 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 0.019 1294 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 1239 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.374 1.956 1750 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.761 3.004 2816 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 7.306 5.000 156 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 36.875 24.098 61 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 17.898 15.000 215 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 21.406 15.000 7 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.080 0.200 195 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 0.020 1440 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 299 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.31 _refine_ls_shell.d_res_low 2.374 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 14 _refine_ls_shell.number_reflns_R_work 324 _refine_ls_shell.percent_reflns_obs 65.13 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.398 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.242 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5CUZ _struct.title 'Crystal structure of SeMet-substituted N-terminal truncated human B12-chaperone CblD (108-296)' _struct.pdbx_descriptor 'Methylmalonic aciduria and homocystinuria type D protein, mitochondrial' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5CUZ _struct_keywords.text 'Vitamin B12, Nitro-FMN-reductase, CHAPERONE' _struct_keywords.pdbx_keywords CHAPERONE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 32 ? PHE A 37 ? SER A 136 PHE A 141 5 ? 6 HELX_P HELX_P2 AA2 LEU A 53 ? SER A 59 ? LEU A 157 SER A 163 1 ? 7 HELX_P HELX_P3 AA3 GLU A 87 ? GLU A 114 ? GLU A 191 GLU A 218 1 ? 28 HELX_P HELX_P4 AA4 ASP A 142 ? LEU A 148 ? ASP A 246 LEU A 252 5 ? 7 HELX_P HELX_P5 AA5 SER A 183 ? SER A 190 ? SER A 287 SER A 294 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A LEU 69 C ? ? ? 1_555 A MSE 70 N ? ? A LEU 173 A MSE 174 1_555 ? ? ? ? ? ? ? 1.334 ? covale2 covale both ? A MSE 70 C ? ? ? 1_555 A ILE 71 N ? ? A MSE 174 A ILE 175 1_555 ? ? ? ? ? ? ? 1.317 ? covale3 covale both ? A ASP 81 C ? ? ? 1_555 A MSE 82 N ? ? A ASP 185 A MSE 186 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale both ? A MSE 82 C ? ? ? 1_555 A THR 83 N ? ? A MSE 186 A THR 187 1_555 ? ? ? ? ? ? ? 1.335 ? covale5 covale both ? A ILE 185 C ? ? ? 1_555 A MSE 186 N ? ? A ILE 289 A MSE 290 1_555 ? ? ? ? ? ? ? 1.334 ? covale6 covale both ? A MSE 186 C ? ? ? 1_555 A LYS 187 N ? ? A MSE 290 A LYS 291 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 42 ? THR A 48 ? VAL A 146 THR A 152 AA1 2 MSE A 70 ? LYS A 77 ? MSE A 174 LYS A 181 AA1 3 VAL A 170 ? THR A 177 ? VAL A 274 THR A 281 AA1 4 ALA A 118 ? PHE A 120 ? ALA A 222 PHE A 224 AA2 1 SER A 151 ? ASP A 154 ? SER A 255 ASP A 258 AA2 2 LYS A 159 ? ARG A 162 ? LYS A 263 ARG A 266 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLN A 47 ? N GLN A 151 O ILE A 71 ? O ILE A 175 AA1 2 3 N LEU A 72 ? N LEU A 176 O ILE A 175 ? O ILE A 279 AA1 3 4 O PHE A 176 ? O PHE A 280 N ASP A 119 ? N ASP A 223 AA2 1 2 N ASP A 153 ? N ASP A 257 O VAL A 160 ? O VAL A 264 # _atom_sites.entry_id 5CUZ _atom_sites.fract_transf_matrix[1][1] 0.015304 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015100 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013911 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 105 ? ? ? A . n A 1 2 HIS 2 106 ? ? ? A . n A 1 3 MSE 3 107 ? ? ? A . n A 1 4 SER 4 108 ? ? ? A . n A 1 5 SER 5 109 ? ? ? A . n A 1 6 GLU 6 110 ? ? ? A . n A 1 7 ARG 7 111 ? ? ? A . n A 1 8 HIS 8 112 ? ? ? A . n A 1 9 GLU 9 113 ? ? ? A . n A 1 10 PHE 10 114 ? ? ? A . n A 1 11 VAL 11 115 ? ? ? A . n A 1 12 MSE 12 116 ? ? ? A . n A 1 13 ALA 13 117 ? ? ? A . n A 1 14 GLN 14 118 ? ? ? A . n A 1 15 TYR 15 119 ? ? ? A . n A 1 16 VAL 16 120 ? ? ? A . n A 1 17 ASN 17 121 ? ? ? A . n A 1 18 GLU 18 122 ? ? ? A . n A 1 19 PHE 19 123 ? ? ? A . n A 1 20 GLN 20 124 ? ? ? A . n A 1 21 GLY 21 125 ? ? ? A . n A 1 22 ASN 22 126 ? ? ? A . n A 1 23 ASP 23 127 ? ? ? A . n A 1 24 ALA 24 128 ? ? ? A . n A 1 25 PRO 25 129 ? ? ? A . n A 1 26 VAL 26 130 ? ? ? A . n A 1 27 GLU 27 131 ? ? ? A . n A 1 28 GLN 28 132 ? ? ? A . n A 1 29 GLU 29 133 ? ? ? A . n A 1 30 ILE 30 134 134 ILE ILE A . n A 1 31 ASN 31 135 135 ASN ASN A . n A 1 32 SER 32 136 136 SER SER A . n A 1 33 ALA 33 137 137 ALA ALA A . n A 1 34 GLU 34 138 138 GLU GLU A . n A 1 35 THR 35 139 139 THR THR A . n A 1 36 TYR 36 140 140 TYR TYR A . n A 1 37 PHE 37 141 141 PHE PHE A . n A 1 38 GLU 38 142 142 GLU GLU A . n A 1 39 SER 39 143 143 SER SER A . n A 1 40 ALA 40 144 144 ALA ALA A . n A 1 41 ARG 41 145 145 ARG ARG A . n A 1 42 VAL 42 146 146 VAL VAL A . n A 1 43 GLU 43 147 147 GLU GLU A . n A 1 44 CYS 44 148 148 CYS CYS A . n A 1 45 ALA 45 149 149 ALA ALA A . n A 1 46 ILE 46 150 150 ILE ILE A . n A 1 47 GLN 47 151 151 GLN GLN A . n A 1 48 THR 48 152 152 THR THR A . n A 1 49 CYS 49 153 153 CYS CYS A . n A 1 50 PRO 50 154 154 PRO PRO A . n A 1 51 GLU 51 155 155 GLU GLU A . n A 1 52 LEU 52 156 156 LEU LEU A . n A 1 53 LEU 53 157 157 LEU LEU A . n A 1 54 ARG 54 158 158 ARG ARG A . n A 1 55 LYS 55 159 159 LYS LYS A . n A 1 56 ASP 56 160 160 ASP ASP A . n A 1 57 PHE 57 161 161 PHE PHE A . n A 1 58 GLU 58 162 162 GLU GLU A . n A 1 59 SER 59 163 163 SER SER A . n A 1 60 LEU 60 164 164 LEU LEU A . n A 1 61 PHE 61 165 165 PHE PHE A . n A 1 62 PRO 62 166 166 PRO PRO A . n A 1 63 GLU 63 167 167 GLU GLU A . n A 1 64 VAL 64 168 ? ? ? A . n A 1 65 ALA 65 169 ? ? ? A . n A 1 66 ASN 66 170 ? ? ? A . n A 1 67 GLY 67 171 ? ? ? A . n A 1 68 LYS 68 172 172 LYS LYS A . n A 1 69 LEU 69 173 173 LEU LEU A . n A 1 70 MSE 70 174 174 MSE MSE A . n A 1 71 ILE 71 175 175 ILE ILE A . n A 1 72 LEU 72 176 176 LEU LEU A . n A 1 73 THR 73 177 177 THR THR A . n A 1 74 VAL 74 178 178 VAL VAL A . n A 1 75 THR 75 179 179 THR THR A . n A 1 76 GLN 76 180 180 GLN GLN A . n A 1 77 LYS 77 181 181 LYS LYS A . n A 1 78 THR 78 182 182 THR THR A . n A 1 79 LYS 79 183 183 LYS LYS A . n A 1 80 ASN 80 184 184 ASN ASN A . n A 1 81 ASP 81 185 185 ASP ASP A . n A 1 82 MSE 82 186 186 MSE MSE A . n A 1 83 THR 83 187 187 THR THR A . n A 1 84 VAL 84 188 188 VAL VAL A . n A 1 85 TRP 85 189 189 TRP TRP A . n A 1 86 SER 86 190 190 SER SER A . n A 1 87 GLU 87 191 191 GLU GLU A . n A 1 88 GLU 88 192 192 GLU GLU A . n A 1 89 VAL 89 193 193 VAL VAL A . n A 1 90 GLU 90 194 194 GLU GLU A . n A 1 91 ILE 91 195 195 ILE ILE A . n A 1 92 GLU 92 196 196 GLU GLU A . n A 1 93 ARG 93 197 197 ARG ARG A . n A 1 94 GLU 94 198 198 GLU GLU A . n A 1 95 VAL 95 199 199 VAL VAL A . n A 1 96 LEU 96 200 200 LEU LEU A . n A 1 97 LEU 97 201 201 LEU LEU A . n A 1 98 GLU 98 202 202 GLU GLU A . n A 1 99 LYS 99 203 203 LYS LYS A . n A 1 100 PHE 100 204 204 PHE PHE A . n A 1 101 ILE 101 205 205 ILE ILE A . n A 1 102 ASN 102 206 206 ASN ASN A . n A 1 103 GLY 103 207 207 GLY GLY A . n A 1 104 ALA 104 208 208 ALA ALA A . n A 1 105 LYS 105 209 209 LYS LYS A . n A 1 106 GLU 106 210 210 GLU GLU A . n A 1 107 ILE 107 211 211 ILE ILE A . n A 1 108 CYS 108 212 212 CYS CYS A . n A 1 109 TYR 109 213 213 TYR TYR A . n A 1 110 ALA 110 214 214 ALA ALA A . n A 1 111 LEU 111 215 215 LEU LEU A . n A 1 112 ARG 112 216 216 ARG ARG A . n A 1 113 ALA 113 217 217 ALA ALA A . n A 1 114 GLU 114 218 218 GLU GLU A . n A 1 115 GLY 115 219 219 GLY GLY A . n A 1 116 TYR 116 220 220 TYR TYR A . n A 1 117 TRP 117 221 221 TRP TRP A . n A 1 118 ALA 118 222 222 ALA ALA A . n A 1 119 ASP 119 223 223 ASP ASP A . n A 1 120 PHE 120 224 224 PHE PHE A . n A 1 121 ILE 121 225 225 ILE ILE A . n A 1 122 ASP 122 226 226 ASP ASP A . n A 1 123 PRO 123 227 227 PRO PRO A . n A 1 124 SER 124 228 228 SER SER A . n A 1 125 SER 125 229 229 SER SER A . n A 1 126 GLY 126 230 230 GLY GLY A . n A 1 127 LEU 127 231 231 LEU LEU A . n A 1 128 ALA 128 232 232 ALA ALA A . n A 1 129 PHE 129 233 233 PHE PHE A . n A 1 130 PHE 130 234 234 PHE PHE A . n A 1 131 GLY 131 235 235 GLY GLY A . n A 1 132 PRO 132 236 236 PRO PRO A . n A 1 133 TYR 133 237 237 TYR TYR A . n A 1 134 THR 134 238 238 THR THR A . n A 1 135 ASN 135 239 239 ASN ASN A . n A 1 136 ASN 136 240 240 ASN ASN A . n A 1 137 THR 137 241 241 THR THR A . n A 1 138 LEU 138 242 242 LEU LEU A . n A 1 139 PHE 139 243 243 PHE PHE A . n A 1 140 GLU 140 244 244 GLU GLU A . n A 1 141 THR 141 245 245 THR THR A . n A 1 142 ASP 142 246 246 ASP ASP A . n A 1 143 GLU 143 247 247 GLU GLU A . n A 1 144 ARG 144 248 248 ARG ARG A . n A 1 145 TYR 145 249 249 TYR TYR A . n A 1 146 ARG 146 250 250 ARG ARG A . n A 1 147 HIS 147 251 251 HIS HIS A . n A 1 148 LEU 148 252 252 LEU LEU A . n A 1 149 GLY 149 253 253 GLY GLY A . n A 1 150 PHE 150 254 254 PHE PHE A . n A 1 151 SER 151 255 255 SER SER A . n A 1 152 VAL 152 256 256 VAL VAL A . n A 1 153 ASP 153 257 257 ASP ASP A . n A 1 154 ASP 154 258 258 ASP ASP A . n A 1 155 LEU 155 259 259 LEU LEU A . n A 1 156 GLY 156 260 260 GLY GLY A . n A 1 157 CYS 157 261 261 CYS CYS A . n A 1 158 CYS 158 262 262 CYS CYS A . n A 1 159 LYS 159 263 263 LYS LYS A . n A 1 160 VAL 160 264 264 VAL VAL A . n A 1 161 ILE 161 265 265 ILE ILE A . n A 1 162 ARG 162 266 266 ARG ARG A . n A 1 163 HIS 163 267 267 HIS HIS A . n A 1 164 SER 164 268 268 SER SER A . n A 1 165 LEU 165 269 269 LEU LEU A . n A 1 166 TRP 166 270 270 TRP TRP A . n A 1 167 GLY 167 271 271 GLY GLY A . n A 1 168 THR 168 272 272 THR THR A . n A 1 169 HIS 169 273 273 HIS HIS A . n A 1 170 VAL 170 274 274 VAL VAL A . n A 1 171 VAL 171 275 275 VAL VAL A . n A 1 172 VAL 172 276 276 VAL VAL A . n A 1 173 GLY 173 277 277 GLY GLY A . n A 1 174 SER 174 278 278 SER SER A . n A 1 175 ILE 175 279 279 ILE ILE A . n A 1 176 PHE 176 280 280 PHE PHE A . n A 1 177 THR 177 281 281 THR THR A . n A 1 178 ASN 178 282 282 ASN ASN A . n A 1 179 ALA 179 283 283 ALA ALA A . n A 1 180 THR 180 284 284 THR THR A . n A 1 181 PRO 181 285 285 PRO PRO A . n A 1 182 ASP 182 286 286 ASP ASP A . n A 1 183 SER 183 287 287 SER SER A . n A 1 184 HIS 184 288 288 HIS HIS A . n A 1 185 ILE 185 289 289 ILE ILE A . n A 1 186 MSE 186 290 290 MSE MSE A . n A 1 187 LYS 187 291 291 LYS LYS A . n A 1 188 LYS 188 292 292 LYS LYS A . n A 1 189 LEU 189 293 293 LEU LEU A . n A 1 190 SER 190 294 294 SER SER A . n A 1 191 GLY 191 295 295 GLY GLY A . n A 1 192 ASN 192 296 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 301 50 HOH HOH A . B 2 HOH 2 302 45 HOH HOH A . B 2 HOH 3 303 22 HOH HOH A . B 2 HOH 4 304 41 HOH HOH A . B 2 HOH 5 305 51 HOH HOH A . B 2 HOH 6 306 39 HOH HOH A . B 2 HOH 7 307 5 HOH HOH A . B 2 HOH 8 308 42 HOH HOH A . B 2 HOH 9 309 52 HOH HOH A . B 2 HOH 10 310 20 HOH HOH A . B 2 HOH 11 311 35 HOH HOH A . B 2 HOH 12 312 16 HOH HOH A . B 2 HOH 13 313 49 HOH HOH A . B 2 HOH 14 314 48 HOH HOH A . B 2 HOH 15 315 44 HOH HOH A . B 2 HOH 16 316 19 HOH HOH A . B 2 HOH 17 317 47 HOH HOH A . B 2 HOH 18 318 37 HOH HOH A . B 2 HOH 19 319 17 HOH HOH A . B 2 HOH 20 320 46 HOH HOH A . B 2 HOH 21 321 40 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 70 A MSE 174 ? MET 'modified residue' 2 A MSE 82 A MSE 186 ? MET 'modified residue' 3 A MSE 186 A MSE 290 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2560 ? 1 MORE -20 ? 1 'SSA (A^2)' 16240 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 65.3410000000 0.0000000000 -1.0000000000 0.0000000000 66.2260000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-09-23 2 'Structure model' 1 1 2015-09-30 3 'Structure model' 1 2 2015-12-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0029 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OE2 A GLU 155 ? ? 1_555 OE2 A GLU 155 ? ? 2_655 1.90 2 1 OE2 A GLU 192 ? ? 1_555 OE2 A GLU 192 ? ? 2_665 2.08 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 259 ? ? -91.57 37.21 2 1 CYS A 261 ? ? -69.60 -72.81 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 SER _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 190 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLU _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 191 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -148.34 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 105 ? A GLY 1 2 1 Y 1 A HIS 106 ? A HIS 2 3 1 Y 1 A MSE 107 ? A MSE 3 4 1 Y 1 A SER 108 ? A SER 4 5 1 Y 1 A SER 109 ? A SER 5 6 1 Y 1 A GLU 110 ? A GLU 6 7 1 Y 1 A ARG 111 ? A ARG 7 8 1 Y 1 A HIS 112 ? A HIS 8 9 1 Y 1 A GLU 113 ? A GLU 9 10 1 Y 1 A PHE 114 ? A PHE 10 11 1 Y 1 A VAL 115 ? A VAL 11 12 1 Y 1 A MSE 116 ? A MSE 12 13 1 Y 1 A ALA 117 ? A ALA 13 14 1 Y 1 A GLN 118 ? A GLN 14 15 1 Y 1 A TYR 119 ? A TYR 15 16 1 Y 1 A VAL 120 ? A VAL 16 17 1 Y 1 A ASN 121 ? A ASN 17 18 1 Y 1 A GLU 122 ? A GLU 18 19 1 Y 1 A PHE 123 ? A PHE 19 20 1 Y 1 A GLN 124 ? A GLN 20 21 1 Y 1 A GLY 125 ? A GLY 21 22 1 Y 1 A ASN 126 ? A ASN 22 23 1 Y 1 A ASP 127 ? A ASP 23 24 1 Y 1 A ALA 128 ? A ALA 24 25 1 Y 1 A PRO 129 ? A PRO 25 26 1 Y 1 A VAL 130 ? A VAL 26 27 1 Y 1 A GLU 131 ? A GLU 27 28 1 Y 1 A GLN 132 ? A GLN 28 29 1 Y 1 A GLU 133 ? A GLU 29 30 1 Y 1 A VAL 168 ? A VAL 64 31 1 Y 1 A ALA 169 ? A ALA 65 32 1 Y 1 A ASN 170 ? A ASN 66 33 1 Y 1 A GLY 171 ? A GLY 67 34 1 Y 1 A ASN 296 ? A ASN 192 # _pdbx_audit_support.funding_organization 'American Heart Association' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 13SDG14560056 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #