HEADER HYDROLASE 25-JUL-15 5CV5 TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT DELTA+PHS TITLE 2 K64G/V66K/E67G AT CRYOGENIC TEMPERATURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMONUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TNASE, MICROCOCCAL NUCLEASE, STAPHYLOCOCCAL NUCLEASE; COMPND 5 EC: 3.1.31.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: NUC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24A+ KEYWDS NUCLEASE, HYPERSTABLE, PDTP, IONIZABLE GROUP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.ORTEGA QUINTANILLA,A.C.ROBINSON,J.L.SCHLESSMAN,B.GARCIA-MORENO E. REVDAT 4 27-SEP-23 5CV5 1 LINK REVDAT 3 25-DEC-19 5CV5 1 REMARK REVDAT 2 13-SEP-17 5CV5 1 REMARK REVDAT 1 12-AUG-15 5CV5 0 JRNL AUTH G.ORTEGA QUINTANILLA,A.C.ROBINSON,J.L.SCHLESSMAN, JRNL AUTH 2 B.GARCIA-MORENO E. JRNL TITL CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT JRNL TITL 2 DELTA+PHS K64G/V66K/E67G AT CRYOGENIC TEMPERATURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1319 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1838 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2024 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.920 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2130 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2100 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2871 ; 1.792 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4855 ; 0.838 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 259 ; 5.984 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;33.017 ;24.725 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 409 ;16.301 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;11.707 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 308 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2329 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 457 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1021 ; 1.398 ; 1.144 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1020 ; 1.383 ; 1.143 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1273 ; 1.992 ; 1.703 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5009 3.7058 5.6388 REMARK 3 T TENSOR REMARK 3 T11: 0.0477 T22: 0.0200 REMARK 3 T33: 0.0480 T12: -0.0061 REMARK 3 T13: 0.0088 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 1.7226 L22: 1.3271 REMARK 3 L33: 1.0377 L12: -0.4539 REMARK 3 L13: -0.0394 L23: 0.3208 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: 0.0069 S13: -0.0054 REMARK 3 S21: 0.0219 S22: 0.0151 S23: 0.0312 REMARK 3 S31: 0.0398 S32: -0.0483 S33: -0.0082 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): 52.8081 2.1242 33.7171 REMARK 3 T TENSOR REMARK 3 T11: 0.0036 T22: 0.0999 REMARK 3 T33: 0.0257 T12: 0.0015 REMARK 3 T13: 0.0029 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 1.9965 L22: 1.8881 REMARK 3 L33: 1.1612 L12: 0.0252 REMARK 3 L13: 0.2290 L23: 0.5113 REMARK 3 S TENSOR REMARK 3 S11: -0.0302 S12: -0.3843 S13: -0.0922 REMARK 3 S21: 0.0049 S22: 0.0673 S23: 0.1252 REMARK 3 S31: -0.0541 S32: 0.0022 S33: -0.0370 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5CV5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211873. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GE(111) REMARK 200 OPTICS : MULTI-LAYER OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APEX II CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : APEX REMARK 200 DATA SCALING SOFTWARE : APEX 2008/2 FOR WINDOWS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26668 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.84 REMARK 200 R MERGE (I) : 0.02610 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.33 REMARK 200 R MERGE FOR SHELL (I) : 0.23360 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: PDB ENTRY 3BDC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% MPD, 25 MM POTASSIUM PHOSPHATE, REMARK 280 CALCIUM CHLORIDE, PDTP, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.27450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 ASN A 144 REMARK 465 ALA A 145 REMARK 465 ASP A 146 REMARK 465 SER A 147 REMARK 465 GLY A 148 REMARK 465 GLN A 149 REMARK 465 ALA B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 465 LYS B 5 REMARK 465 LYS B 6 REMARK 465 GLY B 67 REMARK 465 ASN B 68 REMARK 465 ALA B 69 REMARK 465 LYS B 70 REMARK 465 GLU B 142 REMARK 465 ASP B 143 REMARK 465 ASN B 144 REMARK 465 ALA B 145 REMARK 465 ASP B 146 REMARK 465 SER B 147 REMARK 465 GLY B 148 REMARK 465 GLN B 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 105 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 54 -1.82 70.23 REMARK 500 ASN A 138 -109.23 57.57 REMARK 500 ASP B 19 -159.38 -146.33 REMARK 500 ASP B 77 -158.49 -90.28 REMARK 500 ASN B 138 -110.91 53.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD2 REMARK 620 2 ASP A 40 OD1 85.5 REMARK 620 3 THR A 41 O 91.4 76.0 REMARK 620 4 GLU A 43 OE2 152.1 122.2 97.6 REMARK 620 5 THP A 202 O5P 93.9 71.9 146.9 92.8 REMARK 620 6 HOH A 306 O 73.7 140.5 136.1 81.6 76.4 REMARK 620 7 HOH A 312 O 81.3 139.0 65.8 78.5 147.4 71.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 21 OD2 REMARK 620 2 ASP B 40 OD1 83.1 REMARK 620 3 THR B 41 O 90.0 82.2 REMARK 620 4 GLU B 43 OE2 148.3 125.5 105.9 REMARK 620 5 THP B 202 O4P 90.9 69.1 150.9 88.0 REMARK 620 6 HOH B 302 O 74.6 134.7 135.6 74.9 72.2 REMARK 620 7 HOH B 317 O 79.8 142.6 64.9 82.5 143.6 71.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THP A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THP B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BDC RELATED DB: PDB DBREF 5CV5 A 1 149 UNP P00644 NUC_STAAU 83 231 DBREF 5CV5 B 1 149 UNP P00644 NUC_STAAU 83 231 SEQADV 5CV5 A UNP P00644 THR 126 DELETION SEQADV 5CV5 A UNP P00644 LYS 127 DELETION SEQADV 5CV5 A UNP P00644 HIS 128 DELETION SEQADV 5CV5 A UNP P00644 PRO 129 DELETION SEQADV 5CV5 A UNP P00644 LYS 130 DELETION SEQADV 5CV5 A UNP P00644 LYS 131 DELETION SEQADV 5CV5 PHE A 50 UNP P00644 GLY 132 ENGINEERED MUTATION SEQADV 5CV5 ASN A 51 UNP P00644 VAL 133 ENGINEERED MUTATION SEQADV 5CV5 GLY A 64 UNP P00644 LYS 146 ENGINEERED MUTATION SEQADV 5CV5 LYS A 66 UNP P00644 VAL 148 ENGINEERED MUTATION SEQADV 5CV5 GLY A 67 UNP P00644 GLU 149 ENGINEERED MUTATION SEQADV 5CV5 GLY A 117 UNP P00644 PRO 199 ENGINEERED MUTATION SEQADV 5CV5 LEU A 124 UNP P00644 HIS 206 ENGINEERED MUTATION SEQADV 5CV5 ALA A 128 UNP P00644 SER 210 ENGINEERED MUTATION SEQADV 5CV5 B UNP P00644 THR 126 DELETION SEQADV 5CV5 B UNP P00644 LYS 127 DELETION SEQADV 5CV5 B UNP P00644 HIS 128 DELETION SEQADV 5CV5 B UNP P00644 PRO 129 DELETION SEQADV 5CV5 B UNP P00644 LYS 130 DELETION SEQADV 5CV5 B UNP P00644 LYS 131 DELETION SEQADV 5CV5 PHE B 50 UNP P00644 GLY 132 ENGINEERED MUTATION SEQADV 5CV5 ASN B 51 UNP P00644 VAL 133 ENGINEERED MUTATION SEQADV 5CV5 GLY B 64 UNP P00644 LYS 146 ENGINEERED MUTATION SEQADV 5CV5 LYS B 66 UNP P00644 VAL 148 ENGINEERED MUTATION SEQADV 5CV5 GLY B 67 UNP P00644 GLU 149 ENGINEERED MUTATION SEQADV 5CV5 GLY B 117 UNP P00644 PRO 199 ENGINEERED MUTATION SEQADV 5CV5 LEU B 124 UNP P00644 HIS 206 ENGINEERED MUTATION SEQADV 5CV5 ALA B 128 UNP P00644 SER 210 ENGINEERED MUTATION SEQRES 1 A 143 ALA THR SER THR LYS LYS LEU HIS LYS GLU PRO ALA THR SEQRES 2 A 143 LEU ILE LYS ALA ILE ASP GLY ASP THR VAL LYS LEU MET SEQRES 3 A 143 TYR LYS GLY GLN PRO MET THR PHE ARG LEU LEU LEU VAL SEQRES 4 A 143 ASP THR PRO GLU PHE ASN GLU LYS TYR GLY PRO GLU ALA SEQRES 5 A 143 SER ALA PHE THR LYS GLY MET LYS GLY ASN ALA LYS LYS SEQRES 6 A 143 ILE GLU VAL GLU PHE ASP LYS GLY GLN ARG THR ASP LYS SEQRES 7 A 143 TYR GLY ARG GLY LEU ALA TYR ILE TYR ALA ASP GLY LYS SEQRES 8 A 143 MET VAL ASN GLU ALA LEU VAL ARG GLN GLY LEU ALA LYS SEQRES 9 A 143 VAL ALA TYR VAL TYR LYS GLY ASN ASN THR HIS GLU GLN SEQRES 10 A 143 LEU LEU ARG LYS ALA GLU ALA GLN ALA LYS LYS GLU LYS SEQRES 11 A 143 LEU ASN ILE TRP SER GLU ASP ASN ALA ASP SER GLY GLN SEQRES 1 B 143 ALA THR SER THR LYS LYS LEU HIS LYS GLU PRO ALA THR SEQRES 2 B 143 LEU ILE LYS ALA ILE ASP GLY ASP THR VAL LYS LEU MET SEQRES 3 B 143 TYR LYS GLY GLN PRO MET THR PHE ARG LEU LEU LEU VAL SEQRES 4 B 143 ASP THR PRO GLU PHE ASN GLU LYS TYR GLY PRO GLU ALA SEQRES 5 B 143 SER ALA PHE THR LYS GLY MET LYS GLY ASN ALA LYS LYS SEQRES 6 B 143 ILE GLU VAL GLU PHE ASP LYS GLY GLN ARG THR ASP LYS SEQRES 7 B 143 TYR GLY ARG GLY LEU ALA TYR ILE TYR ALA ASP GLY LYS SEQRES 8 B 143 MET VAL ASN GLU ALA LEU VAL ARG GLN GLY LEU ALA LYS SEQRES 9 B 143 VAL ALA TYR VAL TYR LYS GLY ASN ASN THR HIS GLU GLN SEQRES 10 B 143 LEU LEU ARG LYS ALA GLU ALA GLN ALA LYS LYS GLU LYS SEQRES 11 B 143 LEU ASN ILE TRP SER GLU ASP ASN ALA ASP SER GLY GLN HET CA A 201 1 HET THP A 202 25 HET CA B 201 1 HET THP B 202 25 HETNAM CA CALCIUM ION HETNAM THP THYMIDINE-3',5'-DIPHOSPHATE FORMUL 3 CA 2(CA 2+) FORMUL 4 THP 2(C10 H16 N2 O11 P2) FORMUL 7 HOH *140(H2 O) HELIX 1 AA1 TYR A 54 GLY A 64 1 11 HELIX 2 AA2 GLY A 64 ALA A 69 1 6 HELIX 3 AA3 VAL A 99 GLN A 106 1 8 HELIX 4 AA4 HIS A 121 GLU A 135 1 15 HELIX 5 AA5 LEU A 137 SER A 141 5 5 HELIX 6 AA6 TYR B 54 GLY B 64 1 11 HELIX 7 AA7 VAL B 99 GLN B 106 1 8 HELIX 8 AA8 HIS B 121 LYS B 136 1 16 HELIX 9 AA9 LEU B 137 SER B 141 5 5 SHEET 1 AA1 7 LYS A 97 MET A 98 0 SHEET 2 AA1 7 GLY A 88 ALA A 94 -1 N ALA A 94 O LYS A 97 SHEET 3 AA1 7 ILE A 72 GLU A 75 -1 N GLU A 75 O TYR A 91 SHEET 4 AA1 7 GLU A 10 ASP A 19 -1 N GLU A 10 O VAL A 74 SHEET 5 AA1 7 THR A 22 TYR A 27 -1 O LYS A 24 N LYS A 16 SHEET 6 AA1 7 GLN A 30 LEU A 36 -1 O PHE A 34 N VAL A 23 SHEET 7 AA1 7 GLY A 88 ALA A 94 1 O GLY A 88 N ARG A 35 SHEET 1 AA2 2 VAL A 39 ASP A 40 0 SHEET 2 AA2 2 LYS A 110 VAL A 111 -1 O LYS A 110 N ASP A 40 SHEET 1 AA3 7 LYS B 97 MET B 98 0 SHEET 2 AA3 7 GLY B 88 ALA B 94 -1 N ALA B 94 O LYS B 97 SHEET 3 AA3 7 ILE B 72 GLU B 75 -1 N GLU B 75 O TYR B 91 SHEET 4 AA3 7 GLU B 10 ALA B 17 -1 N GLU B 10 O VAL B 74 SHEET 5 AA3 7 THR B 22 TYR B 27 -1 O LYS B 24 N LYS B 16 SHEET 6 AA3 7 GLN B 30 LEU B 36 -1 O PHE B 34 N VAL B 23 SHEET 7 AA3 7 GLY B 88 ALA B 94 1 O GLY B 88 N ARG B 35 SHEET 1 AA4 2 VAL B 39 ASP B 40 0 SHEET 2 AA4 2 LYS B 110 VAL B 111 -1 O LYS B 110 N ASP B 40 LINK OD2 ASP A 21 CA CA A 201 1555 1555 2.88 LINK OD1 ASP A 40 CA CA A 201 1555 1555 2.64 LINK O THR A 41 CA CA A 201 1555 1555 2.85 LINK OE2 GLU A 43 CA CA A 201 1555 1555 3.14 LINK CA CA A 201 O5P THP A 202 1555 1555 3.06 LINK CA CA A 201 O HOH A 306 1555 1555 2.89 LINK CA CA A 201 O HOH A 312 1555 1555 2.89 LINK OD2 ASP B 21 CA CA B 201 1555 1555 2.95 LINK OD1 ASP B 40 CA CA B 201 1555 1555 2.68 LINK O THR B 41 CA CA B 201 1555 1555 2.72 LINK OE2 GLU B 43 CA CA B 201 1555 1555 2.93 LINK CA CA B 201 O4P THP B 202 1555 1555 3.08 LINK CA CA B 201 O HOH B 302 1555 1555 2.89 LINK CA CA B 201 O HOH B 317 1555 1555 2.95 SITE 1 AC1 7 ASP A 21 ASP A 40 THR A 41 GLU A 43 SITE 2 AC1 7 THP A 202 HOH A 306 HOH A 312 SITE 1 AC2 19 ARG A 35 ASP A 40 LYS A 84 TYR A 85 SITE 2 AC2 19 ARG A 87 LEU A 89 TYR A 113 LYS A 127 SITE 3 AC2 19 CA A 201 HOH A 305 HOH A 306 HOH A 316 SITE 4 AC2 19 HOH A 319 HOH A 321 HOH A 331 HOH A 334 SITE 5 AC2 19 HOH A 349 HOH A 353 HOH A 365 SITE 1 AC3 7 ASP B 21 ASP B 40 THR B 41 GLU B 43 SITE 2 AC3 7 THP B 202 HOH B 302 HOH B 317 SITE 1 AC4 16 ARG B 35 LEU B 37 ASP B 40 ASP B 83 SITE 2 AC4 16 LYS B 84 TYR B 85 ARG B 87 LEU B 89 SITE 3 AC4 16 TYR B 113 LYS B 127 CA B 201 HOH B 301 SITE 4 AC4 16 HOH B 302 HOH B 305 HOH B 306 HOH B 319 CRYST1 30.831 60.549 77.901 90.00 93.15 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032435 0.000000 0.001787 0.00000 SCALE2 0.000000 0.016516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012856 0.00000