HEADER HYDROLASE/SIGNALING PROTEIN 27-JUL-15 5CVM TITLE USP46~UBIQUITIN BEA COVALENT COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 46; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-366; COMPND 5 SYNONYM: DEUBIQUITINATING ENZYME 46,UBIQUITIN THIOESTERASE 46, COMPND 6 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 46; COMPND 7 EC: 3.4.19.12; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: POLYUBIQUITIN-B; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 1-76; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP46; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: UBB; SOURCE 15 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 16 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS USP46 UBIQUITIN COVALENT COMPLEX, DUB, DEUBIQUITINASE, HYDROLASE- KEYWDS 2 SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.F.HARRIS,J.YIN REVDAT 2 11-NOV-15 5CVM 1 JRNL REVDAT 1 07-OCT-15 5CVM 0 JRNL AUTH J.YIN,A.J.SCHOEFFLER,K.WICKLIFFE,K.NEWTON,M.A.STAROVASNIK, JRNL AUTH 2 E.C.DUEBER,S.F.HARRIS JRNL TITL STRUCTURAL INSIGHTS INTO WD-REPEAT 48 ACTIVATION OF JRNL TITL 2 UBIQUITIN-SPECIFIC PROTEASE 46. JRNL REF STRUCTURE V. 23 2043 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26388029 JRNL DOI 10.1016/J.STR.2015.08.010 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 50336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2503 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.95 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.89 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3639 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2199 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3457 REMARK 3 BIN R VALUE (WORKING SET) : 0.2189 REMARK 3 BIN FREE R VALUE : 0.2395 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 182 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3161 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 381 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.96970 REMARK 3 B22 (A**2) : 4.77980 REMARK 3 B33 (A**2) : 4.18990 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.199 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.111 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.103 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.105 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.100 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3267 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4405 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1194 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 93 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 464 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3267 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 421 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4051 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.39 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.68 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CVM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50336 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 27.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.80500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.6 M SODIUM FORMATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.32800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.32800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.30650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.56000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.30650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.56000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.32800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.30650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.56000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.32800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.30650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.56000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1314 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 GLY A 16 REMARK 465 GLU A 17 REMARK 465 ASN A 18 REMARK 465 LEU A 19 REMARK 465 TYR A 20 REMARK 465 PHE A 21 REMARK 465 GLN A 22 REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 PRO A 25 REMARK 465 GLU A 26 REMARK 465 GLN A 27 REMARK 465 PHE A 28 REMARK 465 PRO A 29 REMARK 465 ILE A 30 REMARK 465 ASN A 31 REMARK 465 GLU A 32 REMARK 465 GLU A 143 REMARK 465 LYS A 144 REMARK 465 GLN A 145 REMARK 465 ASN A 146 REMARK 465 GLY A 147 REMARK 465 LYS A 148 REMARK 465 LEU A 149 REMARK 465 LYS A 150 REMARK 465 ASN A 151 REMARK 465 GLY A 152 REMARK 465 ASN A 153 REMARK 465 MET A 154 REMARK 465 ASN A 155 REMARK 465 GLU A 156 REMARK 465 PRO A 157 REMARK 465 ALA A 158 REMARK 465 GLU A 159 REMARK 465 ASN A 160 REMARK 465 ASN A 161 REMARK 465 LYS A 162 REMARK 465 PRO A 163 REMARK 465 SER A 287 REMARK 465 ASP A 288 REMARK 465 ALA A 289 REMARK 465 VAL A 290 REMARK 465 GLU A 366 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 40 40.61 -105.11 REMARK 500 PRO A 99 48.38 -81.68 REMARK 500 SER A 223 -117.85 51.13 REMARK 500 ASP A 329 -115.67 47.63 REMARK 500 ILE A 350 2.58 -63.61 REMARK 500 LEU B 71 -144.93 -109.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1397 DISTANCE = 6.95 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 182 SG REMARK 620 2 CYS A 185 SG 108.9 REMARK 620 3 CYS A 229 SG 108.1 102.1 REMARK 620 4 CYS A 232 SG 112.1 109.5 115.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CVL RELATED DB: PDB REMARK 900 RELATED ID: 5CVN RELATED DB: PDB REMARK 900 RELATED ID: 5CVO RELATED DB: PDB DBREF 5CVM A 25 366 UNP P62068 UBP46_HUMAN 25 366 DBREF 5CVM B 1 59 UNP P0CG47 UBB_HUMAN 1 59 SEQADV 5CVM MET A 9 UNP P62068 EXPRESSION TAG SEQADV 5CVM HIS A 10 UNP P62068 EXPRESSION TAG SEQADV 5CVM HIS A 11 UNP P62068 EXPRESSION TAG SEQADV 5CVM HIS A 12 UNP P62068 EXPRESSION TAG SEQADV 5CVM HIS A 13 UNP P62068 EXPRESSION TAG SEQADV 5CVM HIS A 14 UNP P62068 EXPRESSION TAG SEQADV 5CVM HIS A 15 UNP P62068 EXPRESSION TAG SEQADV 5CVM GLY A 16 UNP P62068 EXPRESSION TAG SEQADV 5CVM GLU A 17 UNP P62068 EXPRESSION TAG SEQADV 5CVM ASN A 18 UNP P62068 EXPRESSION TAG SEQADV 5CVM LEU A 19 UNP P62068 EXPRESSION TAG SEQADV 5CVM TYR A 20 UNP P62068 EXPRESSION TAG SEQADV 5CVM PHE A 21 UNP P62068 EXPRESSION TAG SEQADV 5CVM GLN A 22 UNP P62068 EXPRESSION TAG SEQADV 5CVM GLY A 23 UNP P62068 EXPRESSION TAG SEQADV 5CVM SER A 24 UNP P62068 EXPRESSION TAG SEQADV 5CVM MET B -19 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM GLY B -18 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM SER B -17 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM SER B -16 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM HIS B -15 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM HIS B -14 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM HIS B -13 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM HIS B -12 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM HIS B -11 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM HIS B -10 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM SER B -9 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM SER B -8 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM GLY B -7 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM LEU B -6 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM VAL B -5 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM PRO B -4 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM ARG B -3 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM GLY B -2 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM SER B -1 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM HIS B 0 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM ASN B 60 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM ILE B 61 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM GLN B 62 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM LYS B 63 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM GLU B 64 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM SER B 65 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM THR B 66 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM LEU B 67 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM HIS B 68 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM LEU B 69 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM VAL B 70 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM LEU B 71 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM ARG B 72 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM LEU B 73 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM ARG B 74 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM GLY B 75 UNP P0CG47 EXPRESSION TAG SEQADV 5CVM GLY B 76 UNP P0CG47 EXPRESSION TAG SEQRES 1 A 358 MET HIS HIS HIS HIS HIS HIS GLY GLU ASN LEU TYR PHE SEQRES 2 A 358 GLN GLY SER PRO GLU GLN PHE PRO ILE ASN GLU HIS TYR SEQRES 3 A 358 PHE GLY LEU VAL ASN PHE GLY ASN THR CYS TYR CYS ASN SEQRES 4 A 358 SER VAL LEU GLN ALA LEU TYR PHE CYS ARG PRO PHE ARG SEQRES 5 A 358 GLU ASN VAL LEU ALA TYR LYS ALA GLN GLN LYS LYS LYS SEQRES 6 A 358 GLU ASN LEU LEU THR CYS LEU ALA ASP LEU PHE HIS SER SEQRES 7 A 358 ILE ALA THR GLN LYS LYS LYS VAL GLY VAL ILE PRO PRO SEQRES 8 A 358 LYS LYS PHE ILE SER ARG LEU ARG LYS GLU ASN ASP LEU SEQRES 9 A 358 PHE ASP ASN TYR MET GLN GLN ASP ALA HIS GLU PHE LEU SEQRES 10 A 358 ASN TYR LEU LEU ASN THR ILE ALA ASP ILE LEU GLN GLU SEQRES 11 A 358 GLU LYS LYS GLN GLU LYS GLN ASN GLY LYS LEU LYS ASN SEQRES 12 A 358 GLY ASN MET ASN GLU PRO ALA GLU ASN ASN LYS PRO GLU SEQRES 13 A 358 LEU THR TRP VAL HIS GLU ILE PHE GLN GLY THR LEU THR SEQRES 14 A 358 ASN GLU THR ARG CYS LEU ASN CYS GLU THR VAL SER SER SEQRES 15 A 358 LYS ASP GLU ASP PHE LEU ASP LEU SER VAL ASP VAL GLU SEQRES 16 A 358 GLN ASN THR SER ILE THR HIS CYS LEU ARG ASP PHE SER SEQRES 17 A 358 ASN THR GLU THR LEU CYS SER GLU GLN LYS TYR TYR CYS SEQRES 18 A 358 GLU THR CYS CYS SER LYS GLN GLU ALA GLN LYS ARG MET SEQRES 19 A 358 ARG VAL LYS LYS LEU PRO MET ILE LEU ALA LEU HIS LEU SEQRES 20 A 358 LYS ARG PHE LYS TYR MET GLU GLN LEU HIS ARG TYR THR SEQRES 21 A 358 LYS LEU SER TYR ARG VAL VAL PHE PRO LEU GLU LEU ARG SEQRES 22 A 358 LEU PHE ASN THR SER SER ASP ALA VAL ASN LEU ASP ARG SEQRES 23 A 358 MET TYR ASP LEU VAL ALA VAL VAL VAL HIS CYS GLY SER SEQRES 24 A 358 GLY PRO ASN ARG GLY HIS TYR ILE THR ILE VAL LYS SER SEQRES 25 A 358 HIS GLY PHE TRP LEU LEU PHE ASP ASP ASP ILE VAL GLU SEQRES 26 A 358 LYS ILE ASP ALA GLN ALA ILE GLU GLU PHE TYR GLY LEU SEQRES 27 A 358 THR SER ASP ILE SER LYS ASN SER GLU SER GLY TYR ILE SEQRES 28 A 358 LEU PHE TYR GLN SER ARG GLU SEQRES 1 B 96 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 96 LEU VAL PRO ARG GLY SER HIS MET GLN ILE PHE VAL LYS SEQRES 3 B 96 THR LEU THR GLY LYS THR ILE THR LEU GLU VAL GLU PRO SEQRES 4 B 96 SER ASP THR ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP SEQRES 5 B 96 LYS GLU GLY ILE PRO PRO ASP GLN GLN ARG LEU ILE PHE SEQRES 6 B 96 ALA GLY LYS GLN LEU GLU ASP GLY ARG THR LEU SER ASP SEQRES 7 B 96 TYR ASN ILE GLN LYS GLU SER THR LEU HIS LEU VAL LEU SEQRES 8 B 96 ARG LEU ARG GLY GLY HET ZN A1000 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *381(H2 O) HELIX 1 AA1 THR A 43 PHE A 55 1 13 HELIX 2 AA2 CYS A 56 GLN A 69 1 14 HELIX 3 AA3 ASN A 75 GLN A 90 1 16 HELIX 4 AA4 PRO A 99 ASN A 110 1 12 HELIX 5 AA5 ASP A 111 ASP A 114 5 4 HELIX 6 AA6 ALA A 121 GLN A 142 1 22 HELIX 7 AA7 THR A 166 GLN A 173 1 8 HELIX 8 AA8 ILE A 208 SER A 216 1 9 HELIX 9 AA9 CYS A 222 LYS A 226 5 5 HELIX 10 AB1 ASP A 336 GLY A 345 5 10 HELIX 11 AB2 THR B 22 GLY B 35 1 14 HELIX 12 AB3 PRO B 37 GLN B 41 5 5 SHEET 1 AA1 2 TYR A 34 LEU A 37 0 SHEET 2 AA1 2 VAL A 94 ILE A 97 1 O ILE A 97 N GLY A 36 SHEET 1 AA2 2 GLN A 119 ASP A 120 0 SHEET 2 AA2 2 ARG B 74 GLY B 75 -1 O GLY B 75 N GLN A 119 SHEET 1 AA3 4 VAL A 188 PHE A 195 0 SHEET 2 AA3 4 GLY A 174 CYS A 182 -1 N ASN A 178 O LYS A 191 SHEET 3 AA3 4 ALA A 238 LYS A 246 -1 O ARG A 243 N THR A 177 SHEET 4 AA3 4 GLU A 219 LEU A 221 -1 N LEU A 221 O ALA A 238 SHEET 1 AA4 5 LEU A 198 VAL A 200 0 SHEET 2 AA4 5 ILE A 250 LEU A 255 1 O HIS A 254 N LEU A 198 SHEET 3 AA4 5 SER A 354 SER A 364 -1 O TYR A 358 N LEU A 255 SHEET 4 AA4 5 ASP A 293 GLY A 306 -1 N ASP A 297 O GLN A 363 SHEET 5 AA4 5 GLU A 279 PHE A 283 -1 N LEU A 280 O TYR A 296 SHEET 1 AA5 7 LEU A 198 VAL A 200 0 SHEET 2 AA5 7 ILE A 250 LEU A 255 1 O HIS A 254 N LEU A 198 SHEET 3 AA5 7 SER A 354 SER A 364 -1 O TYR A 358 N LEU A 255 SHEET 4 AA5 7 ASP A 293 GLY A 306 -1 N ASP A 297 O GLN A 363 SHEET 5 AA5 7 HIS A 313 SER A 320 -1 O ILE A 315 N VAL A 303 SHEET 6 AA5 7 PHE A 323 ASP A 328 -1 O PHE A 327 N THR A 316 SHEET 7 AA5 7 ILE A 331 ILE A 335 -1 O GLU A 333 N LEU A 326 SHEET 1 AA6 2 THR A 206 SER A 207 0 SHEET 2 AA6 2 VAL A 274 VAL A 275 1 O VAL A 275 N THR A 206 SHEET 1 AA7 2 TYR A 227 CYS A 229 0 SHEET 2 AA7 2 SER A 234 GLN A 236 -1 O GLN A 236 N TYR A 227 SHEET 1 AA8 2 PHE A 258 MET A 261 0 SHEET 2 AA8 2 ARG A 266 LYS A 269 -1 O ARG A 266 N MET A 261 SHEET 1 AA9 5 THR B 12 VAL B 17 0 SHEET 2 AA9 5 MET B 1 LYS B 6 -1 N MET B 1 O VAL B 17 SHEET 3 AA9 5 THR B 66 VAL B 70 1 O LEU B 67 N LYS B 6 SHEET 4 AA9 5 ARG B 42 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA9 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK SG CYS A 44 C GLY B 76 1555 1555 1.89 LINK SG CYS A 182 ZN ZN A1000 1555 1555 2.34 LINK SG CYS A 185 ZN ZN A1000 1555 1555 2.28 LINK SG CYS A 229 ZN ZN A1000 1555 1555 2.36 LINK SG CYS A 232 ZN ZN A1000 1555 1555 2.37 SITE 1 AC1 4 CYS A 182 CYS A 185 CYS A 229 CYS A 232 CRYST1 90.613 105.120 134.656 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011036 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007426 0.00000