data_5CVX # _entry.id 5CVX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5CVX WWPDB D_1000212266 # loop_ _pdbx_database_PDB_obs_spr.id _pdbx_database_PDB_obs_spr.date _pdbx_database_PDB_obs_spr.pdb_id _pdbx_database_PDB_obs_spr.replace_pdb_id _pdbx_database_PDB_obs_spr.details SPRSDE 2015-08-19 5CVX 4N1V ? OBSLTE 2016-06-22 5L8Z 5CVX ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details '4N1V contain the same protein. This entry is re-refined version.' _pdbx_database_related.db_id 4N1V _pdbx_database_related.content_type re-refinement # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5CVX _pdbx_database_status.recvd_initial_deposition_date 2015-07-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Boyko, K.M.' 1 'Gorbacheva, M.A.' 2 'Rakitina, T.V.' 3 'Korgenevsky, D.A.' 4 'Kamashev, D.E.' 5 'Vanyushkina, A.A.' 6 'Lipkin, A.V.' 7 'Popov, V.O.' 8 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Crystallogr F Struct Biol Commun' _citation.journal_id_ASTM ACSFEN _citation.journal_id_CSD ? _citation.journal_id_ISSN 2053-230X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 71 _citation.language ? _citation.page_first 24 _citation.page_last 27 _citation.title ;Expression, purification, crystallization and preliminary X-ray crystallographic analysis of the histone-like HU protein from Spiroplasma melliferum KC3. ; _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1107/S2053230X14025333 _citation.pdbx_database_id_PubMed 25615963 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Boyko, K.' 1 ? primary 'Gorbacheva, M.' 2 ? primary 'Rakitina, T.' 3 ? primary 'Korzhenevskiy, D.' 4 ? primary 'Vanyushkina, A.' 5 ? primary 'Kamashev, D.' 6 ? primary 'Lipkin, A.' 7 ? primary 'Popov, V.' 8 ? # _cell.length_a 57.760 _cell.length_b 39.530 _cell.length_c 39.280 _cell.angle_alpha 90.000 _cell.angle_beta 108.330 _cell.angle_gamma 90.000 _cell.entry_id 5CVX _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 5CVX _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA-binding protein' 10405.896 1 ? ? ? ? 2 water nat water 18.015 55 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GHMSKKELAAQIAEKFTDVLSKTHAEEITNFVFDHIKKALVAGKEVSIAGFGKFAVTERAARDGRNPSTGETIKIPASKS AKFKAGKQLKTDLNNN ; _entity_poly.pdbx_seq_one_letter_code_can ;GHMSKKELAAQIAEKFTDVLSKTHAEEITNFVFDHIKKALVAGKEVSIAGFGKFAVTERAARDGRNPSTGETIKIPASKS AKFKAGKQLKTDLNNN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MET n 1 4 SER n 1 5 LYS n 1 6 LYS n 1 7 GLU n 1 8 LEU n 1 9 ALA n 1 10 ALA n 1 11 GLN n 1 12 ILE n 1 13 ALA n 1 14 GLU n 1 15 LYS n 1 16 PHE n 1 17 THR n 1 18 ASP n 1 19 VAL n 1 20 LEU n 1 21 SER n 1 22 LYS n 1 23 THR n 1 24 HIS n 1 25 ALA n 1 26 GLU n 1 27 GLU n 1 28 ILE n 1 29 THR n 1 30 ASN n 1 31 PHE n 1 32 VAL n 1 33 PHE n 1 34 ASP n 1 35 HIS n 1 36 ILE n 1 37 LYS n 1 38 LYS n 1 39 ALA n 1 40 LEU n 1 41 VAL n 1 42 ALA n 1 43 GLY n 1 44 LYS n 1 45 GLU n 1 46 VAL n 1 47 SER n 1 48 ILE n 1 49 ALA n 1 50 GLY n 1 51 PHE n 1 52 GLY n 1 53 LYS n 1 54 PHE n 1 55 ALA n 1 56 VAL n 1 57 THR n 1 58 GLU n 1 59 ARG n 1 60 ALA n 1 61 ALA n 1 62 ARG n 1 63 ASP n 1 64 GLY n 1 65 ARG n 1 66 ASN n 1 67 PRO n 1 68 SER n 1 69 THR n 1 70 GLY n 1 71 GLU n 1 72 THR n 1 73 ILE n 1 74 LYS n 1 75 ILE n 1 76 PRO n 1 77 ALA n 1 78 SER n 1 79 LYS n 1 80 SER n 1 81 ALA n 1 82 LYS n 1 83 PHE n 1 84 LYS n 1 85 ALA n 1 86 GLY n 1 87 LYS n 1 88 GLN n 1 89 LEU n 1 90 LYS n 1 91 THR n 1 92 ASP n 1 93 LEU n 1 94 ASN n 1 95 ASN n 1 96 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 96 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SPM_000560 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Spiroplasma melliferum KC3' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 570509 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant 'Codonplus Ripl' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PET24 modified' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A037USE5_SPIME _struct_ref.pdbx_db_accession A0A037USE5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSKKELAAQIAEKFTDVLSKTHAEEITNFVFDHIKKALVAGKEVSIAGFGKFAVTERAARDGRNPSTGETIKIPASKSAK FKAGKQLKTDLNNN ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5CVX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 96 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A037USE5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 94 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 94 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5CVX GLY A 1 ? UNP A0A037USE5 ? ? 'expression tag' -1 1 1 5CVX HIS A 2 ? UNP A0A037USE5 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5CVX _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 39.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M TRIS, 35% PEG400, 5% glycerol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-11-22 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.984 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'KURCHATOV SNC BEAMLINE K4.4' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.984 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline K4.4 _diffrn_source.pdbx_synchrotron_site 'KURCHATOV SNC' # _reflns.d_resolution_high 1.360 _reflns.pdbx_number_measured_all 96243 _reflns.number_obs 17603 _reflns.pdbx_Rmerge_I_obs 0.117 _reflns.pdbx_netI_over_sigmaI 20.360 _reflns.pdbx_chi_squared 0.921 _reflns.percent_possible_obs 96.700 _reflns.Rmerge_F_obs 0.082 _reflns.observed_criterion_sigma_I -3.000 _reflns.pdbx_Rrim_I_all 0.127 _reflns.B_iso_Wilson_estimate 23.002 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5CVX _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 1.5 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.360 1.500 15176 ? 4105 0 0.431 3.630 ? ? ? ? ? 4587 ? ? 0.496 ? ? 89.500 0.499 ? ? 1 2 1.500 1.890 27261 ? 6689 0 0.144 10.840 ? ? ? ? ? 6759 ? ? 0.163 ? ? 99.000 0.165 ? ? 1 3 1.890 2.300 24108 ? 2992 0 0.236 31.250 ? ? ? ? ? 3008 ? ? 0.047 ? ? 99.500 0.252 ? ? 1 4 2.300 2.700 12309 ? 1452 0 0.165 43.690 ? ? ? ? ? 1458 ? ? 0.027 ? ? 99.600 0.175 ? ? 1 5 2.700 3.100 6533 ? 795 0 0.100 49.970 ? ? ? ? ? 790 ? ? 0.022 ? ? 100 0.107 ? ? 1 6 3.100 3.500 3615 ? 476 0 0.073 52.280 ? ? ? ? ? 484 ? ? 0.024 ? ? 98.300 0.080 ? ? 1 7 3.500 3.710 1208 ? 169 0 0.067 49.380 ? ? ? ? ? 170 ? ? 0.022 ? ? 99.400 0.073 ? ? 1 8 3.710 4.270 2128 ? 314 0 0.061 49.060 ? ? ? ? ? 317 ? ? 0.027 ? ? 99.100 0.069 ? ? 1 9 4.270 5.200 1734 ? 270 0 0.060 42.980 ? ? ? ? ? 274 ? ? 0.029 ? ? 98.500 0.067 ? ? 1 10 5.200 7.240 1502 ? 215 0 0.058 45.760 ? ? ? ? ? 216 ? ? 0.025 ? ? 99.500 0.064 ? ? 1 11 7.240 30.000 669 ? 126 0 0.040 33.540 ? ? ? ? ? 132 ? ? 0.024 ? ? 95.500 0.046 ? ? 1 12 30.000 40 ? ? ? 0 ? ? ? ? ? ? ? 2 ? ? ? ? ? ? ? ? ? # _refine.entry_id 5CVX _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.3600 _refine.ls_d_res_low 37.2900 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.0600 _refine.ls_number_reflns_obs 16700 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1757 _refine.ls_R_factor_R_work 0.1736 _refine.ls_wR_factor_R_work 0.1736 _refine.ls_R_factor_R_free 0.2147 _refine.ls_wR_factor_R_free 0.2147 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 899 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 19.3840 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.9200 _refine.aniso_B[2][2] -0.0100 _refine.aniso_B[3][3] -0.5500 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.3700 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9690 _refine.correlation_coeff_Fo_to_Fc_free 0.9530 _refine.overall_SU_R_Cruickshank_DPI 0.0623 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free 0.0685 _refine.pdbx_overall_ESU_R 0.0620 _refine.pdbx_overall_ESU_R_Free 0.0690 _refine.overall_SU_ML 0.0450 _refine.overall_SU_B 1.1060 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 1HUU _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8596 _refine.B_iso_max 58.280 _refine.B_iso_min 10.500 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.3600 _refine_hist.d_res_low 37.2900 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 149 _refine_hist.number_atoms_total 837 _refine_hist.pdbx_number_residues_total 93 _refine_hist.pdbx_B_iso_mean_solvent 31.20 _refine_hist.pdbx_number_atoms_protein 688 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 732 0.021 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 484 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 980 2.156 1.948 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 1105 0.955 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 95 7.096 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 34 37.940 25.588 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 143 13.681 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 3 17.235 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 109 0.130 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 736 0.011 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 117 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 374 1.940 1.797 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 369 1.814 1.773 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 465 2.668 2.668 ? ? # _refine_ls_shell.d_res_high 1.3610 _refine_ls_shell.d_res_low 1.3970 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 70.5700 _refine_ls_shell.number_reflns_R_work 889 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2860 _refine_ls_shell.R_factor_R_free 0.3670 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 46 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 935 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_obs ? # _struct.entry_id 5CVX _struct.title 'Structure of DNA-binding protein HU from micoplasma Spiroplasma melliferum' _struct.pdbx_descriptor 'DNA-binding protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5CVX _struct_keywords.text 'HU protein, Micoplasma, DNA binding protein, Histone-like' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 4 ? PHE A 16 ? SER A 2 PHE A 14 1 ? 13 HELX_P HELX_P2 AA2 SER A 21 ? ALA A 42 ? SER A 19 ALA A 40 1 ? 22 HELX_P HELX_P3 AA3 GLY A 86 ? ASN A 94 ? GLY A 84 ASN A 92 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 46 ? ILE A 48 ? VAL A 44 ILE A 46 AA1 2 GLY A 52 ? ARG A 59 ? GLY A 50 ARG A 57 AA1 3 SER A 78 ? ALA A 85 ? SER A 76 ALA A 83 AA2 1 ARG A 62 ? ARG A 65 ? ARG A 60 ARG A 63 AA2 2 THR A 72 ? ILE A 75 ? THR A 70 ILE A 73 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 48 ? N ILE A 46 O GLY A 52 ? O GLY A 50 AA1 2 3 N ALA A 55 ? N ALA A 53 O LYS A 82 ? O LYS A 80 AA2 1 2 N ARG A 62 ? N ARG A 60 O ILE A 75 ? O ILE A 73 # _atom_sites.entry_id 5CVX _atom_sites.fract_transf_matrix[1][1] 0.017313 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005734 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025297 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026818 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 -1 GLY GLY A . n A 1 2 HIS 2 0 0 HIS HIS A . n A 1 3 MET 3 1 1 MET MET A . n A 1 4 SER 4 2 2 SER SER A . n A 1 5 LYS 5 3 3 LYS LYS A . n A 1 6 LYS 6 4 4 LYS LYS A . n A 1 7 GLU 7 5 5 GLU GLU A . n A 1 8 LEU 8 6 6 LEU LEU A . n A 1 9 ALA 9 7 7 ALA ALA A . n A 1 10 ALA 10 8 8 ALA ALA A . n A 1 11 GLN 11 9 9 GLN GLN A . n A 1 12 ILE 12 10 10 ILE ILE A . n A 1 13 ALA 13 11 11 ALA ALA A . n A 1 14 GLU 14 12 12 GLU GLU A . n A 1 15 LYS 15 13 13 LYS LYS A . n A 1 16 PHE 16 14 14 PHE PHE A . n A 1 17 THR 17 15 15 THR THR A . n A 1 18 ASP 18 16 16 ASP ASP A . n A 1 19 VAL 19 17 17 VAL VAL A . n A 1 20 LEU 20 18 18 LEU LEU A . n A 1 21 SER 21 19 19 SER SER A . n A 1 22 LYS 22 20 20 LYS LYS A . n A 1 23 THR 23 21 21 THR THR A . n A 1 24 HIS 24 22 22 HIS HIS A . n A 1 25 ALA 25 23 23 ALA ALA A . n A 1 26 GLU 26 24 24 GLU GLU A . n A 1 27 GLU 27 25 25 GLU GLU A . n A 1 28 ILE 28 26 26 ILE ILE A . n A 1 29 THR 29 27 27 THR THR A . n A 1 30 ASN 30 28 28 ASN ASN A . n A 1 31 PHE 31 29 29 PHE PHE A . n A 1 32 VAL 32 30 30 VAL VAL A . n A 1 33 PHE 33 31 31 PHE PHE A . n A 1 34 ASP 34 32 32 ASP ASP A . n A 1 35 HIS 35 33 33 HIS HIS A . n A 1 36 ILE 36 34 34 ILE ILE A . n A 1 37 LYS 37 35 35 LYS LYS A . n A 1 38 LYS 38 36 36 LYS LYS A . n A 1 39 ALA 39 37 37 ALA ALA A . n A 1 40 LEU 40 38 38 LEU LEU A . n A 1 41 VAL 41 39 39 VAL VAL A . n A 1 42 ALA 42 40 40 ALA ALA A . n A 1 43 GLY 43 41 41 GLY GLY A . n A 1 44 LYS 44 42 42 LYS LYS A . n A 1 45 GLU 45 43 43 GLU GLU A . n A 1 46 VAL 46 44 44 VAL VAL A . n A 1 47 SER 47 45 45 SER SER A . n A 1 48 ILE 48 46 46 ILE ILE A . n A 1 49 ALA 49 47 47 ALA ALA A . n A 1 50 GLY 50 48 48 GLY GLY A . n A 1 51 PHE 51 49 49 PHE PHE A . n A 1 52 GLY 52 50 50 GLY GLY A . n A 1 53 LYS 53 51 51 LYS LYS A . n A 1 54 PHE 54 52 52 PHE PHE A . n A 1 55 ALA 55 53 53 ALA ALA A . n A 1 56 VAL 56 54 54 VAL VAL A . n A 1 57 THR 57 55 55 THR THR A . n A 1 58 GLU 58 56 56 GLU GLU A . n A 1 59 ARG 59 57 57 ARG ARG A . n A 1 60 ALA 60 58 58 ALA ALA A . n A 1 61 ALA 61 59 59 ALA ALA A . n A 1 62 ARG 62 60 60 ARG ARG A . n A 1 63 ASP 63 61 61 ASP ASP A . n A 1 64 GLY 64 62 62 GLY GLY A . n A 1 65 ARG 65 63 63 ARG ARG A . n A 1 66 ASN 66 64 64 ASN ASN A . n A 1 67 PRO 67 65 ? ? ? A . n A 1 68 SER 68 66 ? ? ? A . n A 1 69 THR 69 67 67 THR THR A . n A 1 70 GLY 70 68 68 GLY GLY A . n A 1 71 GLU 71 69 69 GLU GLU A . n A 1 72 THR 72 70 70 THR THR A . n A 1 73 ILE 73 71 71 ILE ILE A . n A 1 74 LYS 74 72 72 LYS LYS A . n A 1 75 ILE 75 73 73 ILE ILE A . n A 1 76 PRO 76 74 74 PRO PRO A . n A 1 77 ALA 77 75 75 ALA ALA A . n A 1 78 SER 78 76 76 SER SER A . n A 1 79 LYS 79 77 77 LYS LYS A . n A 1 80 SER 80 78 78 SER SER A . n A 1 81 ALA 81 79 79 ALA ALA A . n A 1 82 LYS 82 80 80 LYS LYS A . n A 1 83 PHE 83 81 81 PHE PHE A . n A 1 84 LYS 84 82 82 LYS LYS A . n A 1 85 ALA 85 83 83 ALA ALA A . n A 1 86 GLY 86 84 84 GLY GLY A . n A 1 87 LYS 87 85 85 LYS LYS A . n A 1 88 GLN 88 86 86 GLN GLN A . n A 1 89 LEU 89 87 87 LEU LEU A . n A 1 90 LYS 90 88 88 LYS LYS A . n A 1 91 THR 91 89 89 THR THR A . n A 1 92 ASP 92 90 90 ASP ASP A . n A 1 93 LEU 93 91 91 LEU LEU A . n A 1 94 ASN 94 92 92 ASN ASN A . n A 1 95 ASN 95 93 93 ASN ASN A . n A 1 96 ASN 96 94 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 112 HOH HOH A . B 2 HOH 2 102 139 HOH HOH A . B 2 HOH 3 103 158 HOH HOH A . B 2 HOH 4 104 73 HOH HOH A . B 2 HOH 5 105 74 HOH HOH A . B 2 HOH 6 106 170 HOH HOH A . B 2 HOH 7 107 14 HOH HOH A . B 2 HOH 8 108 70 HOH HOH A . B 2 HOH 9 109 38 HOH HOH A . B 2 HOH 10 110 109 HOH HOH A . B 2 HOH 11 111 79 HOH HOH A . B 2 HOH 12 112 82 HOH HOH A . B 2 HOH 13 113 103 HOH HOH A . B 2 HOH 14 114 95 HOH HOH A . B 2 HOH 15 115 68 HOH HOH A . B 2 HOH 16 116 8 HOH HOH A . B 2 HOH 17 117 67 HOH HOH A . B 2 HOH 18 118 69 HOH HOH A . B 2 HOH 19 119 37 HOH HOH A . B 2 HOH 20 120 20 HOH HOH A . B 2 HOH 21 121 34 HOH HOH A . B 2 HOH 22 122 130 HOH HOH A . B 2 HOH 23 123 116 HOH HOH A . B 2 HOH 24 124 59 HOH HOH A . B 2 HOH 25 125 41 HOH HOH A . B 2 HOH 26 126 163 HOH HOH A . B 2 HOH 27 127 142 HOH HOH A . B 2 HOH 28 128 11 HOH HOH A . B 2 HOH 29 129 3 HOH HOH A . B 2 HOH 30 130 149 HOH HOH A . B 2 HOH 31 131 72 HOH HOH A . B 2 HOH 32 132 27 HOH HOH A . B 2 HOH 33 133 99 HOH HOH A . B 2 HOH 34 134 115 HOH HOH A . B 2 HOH 35 135 44 HOH HOH A . B 2 HOH 36 136 113 HOH HOH A . B 2 HOH 37 137 49 HOH HOH A . B 2 HOH 38 138 17 HOH HOH A . B 2 HOH 39 139 58 HOH HOH A . B 2 HOH 40 140 171 HOH HOH A . B 2 HOH 41 141 6 HOH HOH A . B 2 HOH 42 142 9 HOH HOH A . B 2 HOH 43 143 24 HOH HOH A . B 2 HOH 44 144 46 HOH HOH A . B 2 HOH 45 145 157 HOH HOH A . B 2 HOH 46 146 22 HOH HOH A . B 2 HOH 47 147 57 HOH HOH A . B 2 HOH 48 148 13 HOH HOH A . B 2 HOH 49 149 19 HOH HOH A . B 2 HOH 50 150 62 HOH HOH A . B 2 HOH 51 151 35 HOH HOH A . B 2 HOH 52 152 29 HOH HOH A . B 2 HOH 53 153 52 HOH HOH A . B 2 HOH 54 154 10 HOH HOH A . B 2 HOH 55 155 2 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4520 ? 1 MORE -43 ? 1 'SSA (A^2)' 10670 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1.0000000000 0.0000000000 0.0000000000 12.3531487746 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -37.2869697797 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-08-19 2 'Structure model' 1 1 2016-06-22 3 'Structure model' 1 2 2019-12-25 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Obsolete ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 3 'Structure model' Advisory 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' entity 2 3 'Structure model' pdbx_nonpoly_scheme 3 3 'Structure model' pdbx_validate_symm_contact 4 3 'Structure model' reflns_shell # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_entity.pdbx_number_of_molecules' 2 3 'Structure model' '_reflns_shell.percent_possible_all' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0124 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? BALBES ? ? ? . 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 60 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 H _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ILE _pdbx_validate_close_contact.auth_seq_id_2 73 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.59 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PHE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 49 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -122.78 _pdbx_validate_torsion.psi -66.42 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ARG _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 63 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASN _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 64 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 141.84 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 249 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.45 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 36 ? CE ? A LYS 38 CE 2 1 Y 1 A LYS 36 ? NZ ? A LYS 38 NZ 3 1 Y 1 A ARG 63 ? CG ? A ARG 65 CG 4 1 Y 1 A ARG 63 ? CD ? A ARG 65 CD 5 1 Y 1 A ARG 63 ? NE ? A ARG 65 NE 6 1 Y 1 A ARG 63 ? CZ ? A ARG 65 CZ 7 1 Y 1 A ARG 63 ? NH1 ? A ARG 65 NH1 8 1 Y 1 A ARG 63 ? NH2 ? A ARG 65 NH2 9 1 Y 1 A THR 67 ? OG1 ? A THR 69 OG1 10 1 Y 1 A THR 67 ? CG2 ? A THR 69 CG2 11 1 Y 1 A THR 70 ? OG1 ? A THR 72 OG1 12 1 Y 1 A THR 70 ? CG2 ? A THR 72 CG2 13 1 Y 1 A ILE 71 ? CG1 ? A ILE 73 CG1 14 1 Y 1 A ILE 71 ? CG2 ? A ILE 73 CG2 15 1 Y 1 A ILE 71 ? CD1 ? A ILE 73 CD1 16 1 Y 1 A LYS 77 ? NZ ? A LYS 79 NZ 17 1 Y 1 A LYS 82 ? CE ? A LYS 84 CE 18 1 Y 1 A LYS 82 ? NZ ? A LYS 84 NZ 19 1 Y 1 A LYS 85 ? CG ? A LYS 87 CG 20 1 Y 1 A LYS 85 ? CD ? A LYS 87 CD 21 1 Y 1 A LYS 85 ? CE ? A LYS 87 CE 22 1 Y 1 A LYS 85 ? NZ ? A LYS 87 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 65 ? A PRO 67 2 1 Y 1 A SER 66 ? A SER 68 3 1 Y 1 A ASN 94 ? A ASN 96 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #