HEADER OXIDOREDUCTASE 28-JUL-15 5CWE TITLE STRUCTURE OF CYP107L2 FROM STREPTOMYCES AVERMITILIS WITH LAURIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 HYDROXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVERMITILIS MA-4680; SOURCE 3 ORGANISM_TAXID: 227882; SOURCE 4 STRAIN: MA-4680; SOURCE 5 GENE: CYP8, SAV_1987; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS STREPTOMYCES AVERMITILIS, P450, CYP107L2, LAURIC ACID, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.-V.PHAM,S.-H.HAN,J.-H.KIM,D.-H.KIM,L.-W.KANG REVDAT 2 08-NOV-23 5CWE 1 REMARK REVDAT 1 03-AUG-16 5CWE 0 JRNL AUTH T.-V.PHAM,S.-H.HAN,J.-H.KIM,D.-H.KIM,L.-W.KANG JRNL TITL STRUCTURE OF CYP107L2 FROM STREPTOMYCES AVERMITILIS WITH JRNL TITL 2 LAURIC ACID JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 35267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1862 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2347 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6072 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 130 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.445 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.312 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.283 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.525 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.865 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6345 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6102 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8661 ; 1.727 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14004 ; 1.071 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 784 ; 7.553 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 284 ;30.199 ;22.254 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 986 ;18.080 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 76 ;17.934 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 961 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7136 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1396 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3142 ; 3.037 ; 4.384 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3141 ; 3.036 ; 4.384 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3924 ; 4.703 ; 6.571 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3925 ; 4.703 ; 6.571 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3203 ; 2.967 ; 4.593 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3203 ; 2.964 ; 4.593 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4738 ; 4.619 ; 6.764 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7308 ; 7.256 ;34.578 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7309 ; 7.255 ;34.579 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5CWE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212293. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97952 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37158 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.44700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2CD8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE MONOHYDRATE, TRIS-HCL, REMARK 280 PEG 3350, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 59.18550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 275 O PRO B 322 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 388 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 54 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 54 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 95 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 275 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 275 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 137 -68.73 -134.77 REMARK 500 ASP A 156 94.79 -69.22 REMARK 500 ASP A 262 85.79 -157.82 REMARK 500 ALA A 330 -78.37 -95.58 REMARK 500 HIS A 339 146.75 178.48 REMARK 500 ASP A 371 85.49 -164.01 REMARK 500 ALA B 41 87.22 -55.73 REMARK 500 THR B 72 81.74 -159.57 REMARK 500 ASP B 75 -39.07 -39.03 REMARK 500 PHE B 137 -59.18 -148.71 REMARK 500 VAL B 152 79.27 -156.72 REMARK 500 ILE B 155 137.30 -31.61 REMARK 500 ALA B 198 -64.84 -104.06 REMARK 500 HIS B 235 -80.44 -91.29 REMARK 500 MET B 292 -168.09 -162.12 REMARK 500 ILE B 294 -51.70 -126.51 REMARK 500 ARG B 329 129.30 -37.17 REMARK 500 PRO B 331 127.35 -31.38 REMARK 500 GLN B 332 47.02 -145.59 REMARK 500 HIS B 339 140.84 -175.46 REMARK 500 ASP B 371 70.78 -159.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 331 GLN A 332 -136.12 REMARK 500 PRO B 331 GLN B 332 -141.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 580 DISTANCE = 5.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 403 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 344 SG REMARK 620 2 HEM A 403 NA 98.5 REMARK 620 3 HEM A 403 NB 84.9 92.0 REMARK 620 4 HEM A 403 NC 82.6 178.6 87.4 REMARK 620 5 HEM A 403 ND 95.8 88.2 179.2 92.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 403 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 344 SG REMARK 620 2 HEM B 403 NA 93.6 REMARK 620 3 HEM B 403 NB 85.1 89.7 REMARK 620 4 HEM B 403 NC 87.8 178.3 89.5 REMARK 620 5 HEM B 403 ND 95.4 90.5 179.5 90.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DAO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DAO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 DBREF 5CWE A 1 393 UNP Q82LM3 Q82LM3_STRAW 1 393 DBREF 5CWE B 1 393 UNP Q82LM3 Q82LM3_STRAW 1 393 SEQRES 1 A 393 MET GLY ASN VAL ILE ASP LEU GLY GLU TYR GLY ALA ARG SEQRES 2 A 393 PHE THR GLU ASP PRO TYR PRO VAL TYR ALA GLU LEU ARG SEQRES 3 A 393 GLU ARG GLY PRO VAL HIS TRP VAL ARG THR PRO PRO PRO SEQRES 4 A 393 GLU ALA PHE GLU GLY TRP LEU VAL VAL GLY HIS GLU GLU SEQRES 5 A 393 ALA ARG ALA ALA LEU ALA ASP PRO ARG LEU SER LYS ASP SEQRES 6 A 393 GLY THR LYS LYS GLY LEU THR SER LEU ASP VAL GLU LEU SEQRES 7 A 393 MET GLY PRO TYR LEU LEU VAL VAL ASP PRO PRO GLU HIS SEQRES 8 A 393 THR ARG LEU ARG SER LEU VAL ALA ARG ALA PHE THR MET SEQRES 9 A 393 ARG ARG VAL GLU ALA LEU ARG PRO ARG ILE GLN GLU ILE SEQRES 10 A 393 THR ASP GLY LEU LEU ASP GLU MET LEU PRO ARG GLY ARG SEQRES 11 A 393 ALA ASP LEU VAL ASP SER PHE ALA TYR PRO LEU PRO ILE SEQRES 12 A 393 THR VAL ILE CYS GLU LEU LEU GLY VAL PRO ASP ILE ASP SEQRES 13 A 393 ARG VAL THR PHE ARG ALA LEU SER ASN GLU ILE VAL ALA SEQRES 14 A 393 PRO THR GLY GLY ASP ALA GLU LEU ALA ALA TYR GLU ARG SEQRES 15 A 393 LEU ALA ALA TYR LEU ASP GLU LEU ILE ASP ASP LYS ARG SEQRES 16 A 393 SER THR ALA PRO ALA ASP ASP LEU LEU GLY ASP LEU ILE SEQRES 17 A 393 ARG THR ARG ALA GLU ASP ASP ASP ARG LEU SER GLY GLU SEQRES 18 A 393 GLU LEU ARG ALA MET ALA PHE ILE LEU LEU VAL ALA GLY SEQRES 19 A 393 HIS GLU THR THR VAL ASN LEU ILE THR ASN GLY VAL HIS SEQRES 20 A 393 THR LEU LEU THR HIS PRO ASP GLN LEU ALA ALA LEU ARG SEQRES 21 A 393 ALA ASP MET THR LEU LEU ASP GLY ALA VAL GLU GLU VAL SEQRES 22 A 393 LEU ARG PHE GLU GLY PRO VAL GLU THR ALA THR TYR ARG SEQRES 23 A 393 TYR ALA ALA GLU SER MET GLU ILE GLY GLY THR ALA ILE SEQRES 24 A 393 ALA GLU GLY ASP PRO VAL MET ILE GLY LEU ASP ALA ALA SEQRES 25 A 393 GLY ARG ASP PRO ALA ARG HIS PRO ASP PRO HIS VAL PHE SEQRES 26 A 393 ASP ILE HIS ARG ALA PRO GLN GLY HIS LEU ALA PHE GLY SEQRES 27 A 393 HIS GLY ILE HIS TYR CYS LEU GLY ALA PRO LEU ALA ARG SEQRES 28 A 393 LEU GLU ALA ARG VAL ALA LEU ARG SER LEU LEU GLU ARG SEQRES 29 A 393 CYS PRO ASP LEU ALA LEU ASP GLY PRO PRO GLY ALA ARG SEQRES 30 A 393 PRO PRO GLY MET LEU ILE ARG GLY VAL ARG ARG LEU PRO SEQRES 31 A 393 VAL ARG TRP SEQRES 1 B 393 MET GLY ASN VAL ILE ASP LEU GLY GLU TYR GLY ALA ARG SEQRES 2 B 393 PHE THR GLU ASP PRO TYR PRO VAL TYR ALA GLU LEU ARG SEQRES 3 B 393 GLU ARG GLY PRO VAL HIS TRP VAL ARG THR PRO PRO PRO SEQRES 4 B 393 GLU ALA PHE GLU GLY TRP LEU VAL VAL GLY HIS GLU GLU SEQRES 5 B 393 ALA ARG ALA ALA LEU ALA ASP PRO ARG LEU SER LYS ASP SEQRES 6 B 393 GLY THR LYS LYS GLY LEU THR SER LEU ASP VAL GLU LEU SEQRES 7 B 393 MET GLY PRO TYR LEU LEU VAL VAL ASP PRO PRO GLU HIS SEQRES 8 B 393 THR ARG LEU ARG SER LEU VAL ALA ARG ALA PHE THR MET SEQRES 9 B 393 ARG ARG VAL GLU ALA LEU ARG PRO ARG ILE GLN GLU ILE SEQRES 10 B 393 THR ASP GLY LEU LEU ASP GLU MET LEU PRO ARG GLY ARG SEQRES 11 B 393 ALA ASP LEU VAL ASP SER PHE ALA TYR PRO LEU PRO ILE SEQRES 12 B 393 THR VAL ILE CYS GLU LEU LEU GLY VAL PRO ASP ILE ASP SEQRES 13 B 393 ARG VAL THR PHE ARG ALA LEU SER ASN GLU ILE VAL ALA SEQRES 14 B 393 PRO THR GLY GLY ASP ALA GLU LEU ALA ALA TYR GLU ARG SEQRES 15 B 393 LEU ALA ALA TYR LEU ASP GLU LEU ILE ASP ASP LYS ARG SEQRES 16 B 393 SER THR ALA PRO ALA ASP ASP LEU LEU GLY ASP LEU ILE SEQRES 17 B 393 ARG THR ARG ALA GLU ASP ASP ASP ARG LEU SER GLY GLU SEQRES 18 B 393 GLU LEU ARG ALA MET ALA PHE ILE LEU LEU VAL ALA GLY SEQRES 19 B 393 HIS GLU THR THR VAL ASN LEU ILE THR ASN GLY VAL HIS SEQRES 20 B 393 THR LEU LEU THR HIS PRO ASP GLN LEU ALA ALA LEU ARG SEQRES 21 B 393 ALA ASP MET THR LEU LEU ASP GLY ALA VAL GLU GLU VAL SEQRES 22 B 393 LEU ARG PHE GLU GLY PRO VAL GLU THR ALA THR TYR ARG SEQRES 23 B 393 TYR ALA ALA GLU SER MET GLU ILE GLY GLY THR ALA ILE SEQRES 24 B 393 ALA GLU GLY ASP PRO VAL MET ILE GLY LEU ASP ALA ALA SEQRES 25 B 393 GLY ARG ASP PRO ALA ARG HIS PRO ASP PRO HIS VAL PHE SEQRES 26 B 393 ASP ILE HIS ARG ALA PRO GLN GLY HIS LEU ALA PHE GLY SEQRES 27 B 393 HIS GLY ILE HIS TYR CYS LEU GLY ALA PRO LEU ALA ARG SEQRES 28 B 393 LEU GLU ALA ARG VAL ALA LEU ARG SER LEU LEU GLU ARG SEQRES 29 B 393 CYS PRO ASP LEU ALA LEU ASP GLY PRO PRO GLY ALA ARG SEQRES 30 B 393 PRO PRO GLY MET LEU ILE ARG GLY VAL ARG ARG LEU PRO SEQRES 31 B 393 VAL ARG TRP HET SO4 A 401 5 HET DAO A 402 14 HET HEM A 403 43 HET SO4 B 401 5 HET DAO B 402 14 HET HEM B 403 43 HET GOL B 404 6 HETNAM SO4 SULFATE ION HETNAM DAO LAURIC ACID HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 DAO 2(C12 H24 O2) FORMUL 5 HEM 2(C34 H32 FE N4 O4) FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *168(H2 O) HELIX 1 AA1 GLY A 8 TYR A 10 5 3 HELIX 2 AA2 GLY A 11 ASP A 17 1 7 HELIX 3 AA3 PRO A 18 GLY A 29 1 12 HELIX 4 AA4 GLY A 49 ASP A 59 1 11 HELIX 5 AA5 GLY A 66 GLY A 70 5 5 HELIX 6 AA6 SER A 73 GLY A 80 1 8 HELIX 7 AA7 TYR A 82 VAL A 86 5 5 HELIX 8 AA8 PRO A 89 ALA A 99 1 11 HELIX 9 AA9 ARG A 100 PHE A 102 5 3 HELIX 10 AB1 THR A 103 LEU A 110 1 8 HELIX 11 AB2 LEU A 110 LEU A 126 1 17 HELIX 12 AB3 LEU A 133 PHE A 137 1 5 HELIX 13 AB4 TYR A 139 GLY A 151 1 13 HELIX 14 AB5 ASP A 156 ALA A 169 1 14 HELIX 15 AB6 GLY A 172 SER A 196 1 25 HELIX 16 AB7 ASP A 202 GLU A 213 1 12 HELIX 17 AB8 SER A 219 HIS A 252 1 34 HELIX 18 AB9 HIS A 252 ALA A 261 1 10 HELIX 19 AC1 ASP A 262 THR A 264 5 3 HELIX 20 AC2 LEU A 265 GLU A 277 1 13 HELIX 21 AC3 GLY A 308 ARG A 314 1 7 HELIX 22 AC4 HIS A 339 TYR A 343 5 5 HELIX 23 AC5 GLY A 346 CYS A 365 1 20 HELIX 24 AC6 GLY B 8 GLY B 11 5 4 HELIX 25 AC7 ALA B 12 ASP B 17 1 6 HELIX 26 AC8 PRO B 18 GLY B 29 1 12 HELIX 27 AC9 GLY B 49 LEU B 57 1 9 HELIX 28 AD1 ASP B 65 GLY B 70 5 6 HELIX 29 AD2 SER B 73 MET B 79 1 7 HELIX 30 AD3 TYR B 82 VAL B 86 5 5 HELIX 31 AD4 PRO B 89 ALA B 99 1 11 HELIX 32 AD5 ARG B 100 PHE B 102 5 3 HELIX 33 AD6 THR B 103 ALA B 109 1 7 HELIX 34 AD7 LEU B 110 LEU B 126 1 17 HELIX 35 AD8 LEU B 133 PHE B 137 1 5 HELIX 36 AD9 TYR B 139 GLY B 151 1 13 HELIX 37 AE1 ASP B 156 ALA B 169 1 14 HELIX 38 AE2 GLY B 172 THR B 197 1 26 HELIX 39 AE3 ASP B 202 GLU B 213 1 12 HELIX 40 AE4 SER B 219 THR B 251 1 33 HELIX 41 AE5 HIS B 252 ASP B 262 1 11 HELIX 42 AE6 LEU B 265 GLU B 277 1 13 HELIX 43 AE7 GLY B 308 GLY B 313 1 6 HELIX 44 AE8 HIS B 339 TYR B 343 5 5 HELIX 45 AE9 GLY B 346 ARG B 364 1 19 SHEET 1 AA1 4 ILE A 5 ASP A 6 0 SHEET 2 AA1 4 VAL A 31 ARG A 35 1 O TRP A 33 N ILE A 5 SHEET 3 AA1 4 GLU A 43 VAL A 47 -1 O GLY A 44 N VAL A 34 SHEET 4 AA1 4 VAL A 305 ILE A 307 1 O MET A 306 N TRP A 45 SHEET 1 AA2 2 LEU A 62 SER A 63 0 SHEET 2 AA2 2 TYR A 287 ALA A 288 -1 O TYR A 287 N SER A 63 SHEET 1 AA3 3 ARG A 130 ASP A 132 0 SHEET 2 AA3 3 PRO A 390 ARG A 392 -1 O VAL A 391 N ALA A 131 SHEET 3 AA3 3 ALA A 369 LEU A 370 -1 N ALA A 369 O ARG A 392 SHEET 1 AA4 2 MET A 292 GLU A 293 0 SHEET 2 AA4 2 ALA A 298 ILE A 299 -1 O ILE A 299 N MET A 292 SHEET 1 AA5 6 ILE B 5 ASP B 6 0 SHEET 2 AA5 6 VAL B 31 ARG B 35 1 O TRP B 33 N ILE B 5 SHEET 3 AA5 6 GLU B 43 VAL B 47 -1 O LEU B 46 N HIS B 32 SHEET 4 AA5 6 PRO B 304 ILE B 307 1 O MET B 306 N TRP B 45 SHEET 5 AA5 6 ARG B 286 ALA B 288 -1 N ARG B 286 O VAL B 305 SHEET 6 AA5 6 LEU B 62 SER B 63 -1 N SER B 63 O TYR B 287 SHEET 1 AA6 3 ARG B 130 ASP B 132 0 SHEET 2 AA6 3 PRO B 390 ARG B 392 -1 O VAL B 391 N ALA B 131 SHEET 3 AA6 3 ALA B 369 LEU B 370 -1 N ALA B 369 O ARG B 392 SHEET 1 AA7 2 MET B 292 GLU B 293 0 SHEET 2 AA7 2 ALA B 298 ILE B 299 -1 O ILE B 299 N MET B 292 LINK SG CYS A 344 FE HEM A 403 1555 1555 2.07 LINK SG CYS B 344 FE HEM B 403 1555 1555 2.16 CISPEP 1 PRO A 38 PRO A 39 0 12.21 CISPEP 2 PRO A 88 PRO A 89 0 11.63 CISPEP 3 LEU A 150 GLY A 151 0 11.06 CISPEP 4 ASP A 371 GLY A 372 0 -27.73 CISPEP 5 PRO B 38 PRO B 39 0 2.06 CISPEP 6 PRO B 88 PRO B 89 0 4.56 CISPEP 7 LEU B 150 GLY B 151 0 7.06 CISPEP 8 ASP B 371 GLY B 372 0 -26.13 SITE 1 AC1 8 PHE A 337 TYR A 343 ARG A 351 HOH A 506 SITE 2 AC1 8 HOH A 508 HOH A 509 HOH A 532 ARG B 318 SITE 1 AC2 8 TYR A 82 LEU A 84 ILE A 229 ALA A 233 SITE 2 AC2 8 THR A 237 TYR A 285 HEM A 403 HOH A 578 SITE 1 AC3 19 LEU A 83 LEU A 84 HIS A 91 ARG A 95 SITE 2 AC3 19 PHE A 102 ILE A 146 THR A 237 THR A 238 SITE 3 AC3 19 THR A 284 ARG A 286 LEU A 309 ALA A 336 SITE 4 AC3 19 PHE A 337 GLY A 338 HIS A 342 CYS A 344 SITE 5 AC3 19 GLY A 346 ALA A 350 DAO A 402 SITE 1 AC4 6 ARG A 318 TYR B 343 ARG B 351 GOL B 404 SITE 2 AC4 6 HOH B 505 HOH B 507 SITE 1 AC5 4 LEU B 84 ILE B 229 THR B 237 HOH B 581 SITE 1 AC6 18 LEU B 83 LEU B 84 HIS B 91 ARG B 95 SITE 2 AC6 18 ILE B 146 ALA B 233 GLY B 234 THR B 237 SITE 3 AC6 18 THR B 238 THR B 284 ARG B 286 LEU B 309 SITE 4 AC6 18 ALA B 336 PHE B 337 HIS B 342 CYS B 344 SITE 5 AC6 18 GLY B 346 ALA B 350 SITE 1 AC7 6 GLY A 333 GLN B 332 GLY B 333 HIS B 334 SITE 2 AC7 6 SO4 B 401 HOH B 518 CRYST1 64.080 118.371 66.039 90.00 105.51 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015605 0.000000 0.004330 0.00000 SCALE2 0.000000 0.008448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015715 0.00000