HEADER MEMBRANE PROTEIN 28-JUL-15 5CX8 TITLE STRUCTURE OF RAGB, A MAJOR IMMUNODOMINANT VIRULENCE FACTOR OF TITLE 2 PORPHYROMONAS GINGIVALIS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPROTEIN RAGB; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 21-501; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS (STRAIN ATCC BAA-308 / SOURCE 3 W83); SOURCE 4 ORGANISM_TAXID: 242619; SOURCE 5 STRAIN: ATCC BAA-308 / W83; SOURCE 6 GENE: RAGB, PG_0186; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MAJOR IMMUNODOMINANT VIRULENCE FACTOR, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.GOULAS,I.GARCIA-FERRER,J.A.HUTCHERSON,B.A.POTEMPA,J.POTEMPA, AUTHOR 2 D.A.SCOTT,F.X.GOMIS-RUTH REVDAT 3 29-JUL-20 5CX8 1 COMPND REMARK HETNAM SITE REVDAT 3 2 1 ATOM REVDAT 2 16-NOV-16 5CX8 1 JRNL REVDAT 1 21-OCT-15 5CX8 0 JRNL AUTH T.GOULAS,I.GARCIA-FERRER,J.A.HUTCHERSON,B.A.POTEMPA, JRNL AUTH 2 J.POTEMPA,D.A.SCOTT,F.XAVIER GOMIS-RUTH JRNL TITL STRUCTURE OF RAGB, A MAJOR IMMUNODOMINANT OUTER-MEMBRANE JRNL TITL 2 SURFACE RECEPTOR ANTIGEN OF PORPHYROMONAS GINGIVALIS. JRNL REF MOL ORAL MICROBIOL V. 31 472 2016 JRNL REFN ISSN 2041-1014 JRNL PMID 26441291 JRNL DOI 10.1111/OMI.12140 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 60258 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.460 REMARK 3 FREE R VALUE TEST SET COUNT : 881 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.46 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.99 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4447 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2196 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4381 REMARK 3 BIN R VALUE (WORKING SET) : 0.2191 REMARK 3 BIN FREE R VALUE : 0.2541 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.48 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 66 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7528 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 509 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.82110 REMARK 3 B22 (A**2) : 8.28590 REMARK 3 B33 (A**2) : -18.10690 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.314 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.239 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.184 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.230 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.183 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7773 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10549 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 3572 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 224 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1118 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7773 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 991 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9178 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.24 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.88 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|30 - 501} REMARK 3 ORIGIN FOR THE GROUP (A): 36.7310 22.4782 71.5917 REMARK 3 T TENSOR REMARK 3 T11: -0.1922 T22: -0.0821 REMARK 3 T33: 0.0568 T12: -0.0057 REMARK 3 T13: -0.0111 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.4459 L22: 0.6386 REMARK 3 L33: 0.3780 L12: 0.0936 REMARK 3 L13: -0.1820 L23: -0.0869 REMARK 3 S TENSOR REMARK 3 S11: -0.0465 S12: 0.0233 S13: -0.0902 REMARK 3 S21: -0.0747 S22: 0.0216 S23: -0.0688 REMARK 3 S31: 0.0203 S32: -0.0028 S33: 0.0249 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {B|30 - 501} REMARK 3 ORIGIN FOR THE GROUP (A): 29.0638 37.7540 115.6000 REMARK 3 T TENSOR REMARK 3 T11: 0.4104 T22: 0.0951 REMARK 3 T33: -0.0866 T12: 0.0833 REMARK 3 T13: -0.0401 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 1.1513 L22: 3.4109 REMARK 3 L33: 1.2536 L12: -0.6607 REMARK 3 L13: 0.3105 L23: -0.1890 REMARK 3 S TENSOR REMARK 3 S11: -0.1986 S12: -0.3752 S13: -0.1308 REMARK 3 S21: 1.3019 S22: 0.2142 S23: -0.0346 REMARK 3 S31: -0.1302 S32: -0.0235 S33: -0.0156 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {L|3 - 3} REMARK 3 ORIGIN FOR THE GROUP (A): 34.5651 19.1555 52.2283 REMARK 3 T TENSOR REMARK 3 T11: -0.0926 T22: 0.1320 REMARK 3 T33: 0.0746 T12: 0.0967 REMARK 3 T13: -0.1749 T23: -0.0600 REMARK 3 L TENSOR REMARK 3 L11: 0.0515 L22: 0.0000 REMARK 3 L33: 0.0000 L12: -0.2633 REMARK 3 L13: 0.2800 L23: 0.8018 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: 0.0195 S13: 0.0005 REMARK 3 S21: -0.0413 S22: 0.0015 S23: -0.0193 REMARK 3 S31: 0.0462 S32: 0.0049 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {L|1 - 1} REMARK 3 ORIGIN FOR THE GROUP (A): 28.8283 25.2942 93.3358 REMARK 3 T TENSOR REMARK 3 T11: -0.0517 T22: 0.1614 REMARK 3 T33: -0.0931 T12: 0.0965 REMARK 3 T13: -0.0479 T23: -0.0467 REMARK 3 L TENSOR REMARK 3 L11: 0.4131 L22: 0.0000 REMARK 3 L33: 0.2124 L12: -0.0656 REMARK 3 L13: 0.8124 L23: -0.2442 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: 0.0255 S13: -0.0050 REMARK 3 S21: 0.0038 S22: -0.0045 S23: 0.0209 REMARK 3 S31: -0.0067 S32: 0.0638 S33: 0.0142 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {L|2 - 2} REMARK 3 ORIGIN FOR THE GROUP (A): 19.2541 29.1125 90.1187 REMARK 3 T TENSOR REMARK 3 T11: 0.0545 T22: -0.0578 REMARK 3 T33: 0.0512 T12: 0.0557 REMARK 3 T13: 0.0431 T23: -0.1091 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: -0.0078 REMARK 3 L13: -0.0775 L23: 0.0484 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: 0.0062 S13: -0.0053 REMARK 3 S21: 0.0153 S22: 0.0018 S23: 0.0031 REMARK 3 S31: 0.0088 S32: -0.0006 S33: -0.0014 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CX8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211905. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 2.10.2 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60274 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.15500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : 1.11800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM 2-(N-MORPHOLINO)ETHANESULFONIC REMARK 280 ACID 200MM CALCIUM ACETATE, 20% [W/V] POLYETHYLENE GLYCOL 10,000, REMARK 280 PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 28.32000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 92.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.32000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 92.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 21 REMARK 465 LEU A 22 REMARK 465 ASP A 23 REMARK 465 ARG A 24 REMARK 465 ASP A 25 REMARK 465 PRO A 26 REMARK 465 GLU A 27 REMARK 465 GLY A 28 REMARK 465 LYS A 29 REMARK 465 GLU B 21 REMARK 465 LEU B 22 REMARK 465 ASP B 23 REMARK 465 ARG B 24 REMARK 465 ASP B 25 REMARK 465 PRO B 26 REMARK 465 GLU B 27 REMARK 465 GLY B 28 REMARK 465 LYS B 29 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 98 73.08 -151.05 REMARK 500 THR A 174 -121.61 -96.45 REMARK 500 ASN A 318 78.63 -151.09 REMARK 500 VAL A 340 -64.79 -120.71 REMARK 500 LYS A 348 -63.77 76.49 REMARK 500 ASP A 349 22.99 -154.89 REMARK 500 ALA A 414 78.99 -153.73 REMARK 500 PHE B 31 -160.16 -105.76 REMARK 500 THR B 55 -63.22 -109.94 REMARK 500 SER B 68 -176.41 -69.40 REMARK 500 ALA B 98 73.31 -150.86 REMARK 500 THR B 174 -121.28 -95.97 REMARK 500 LYS B 348 -65.21 76.13 REMARK 500 ASP B 349 23.81 -153.40 REMARK 500 ALA B 414 80.01 -152.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1099 DISTANCE = 6.89 ANGSTROMS DBREF 5CX8 A 21 501 UNP F5H948 F5H948_PORGI 21 501 DBREF 5CX8 B 21 501 UNP F5H948 F5H948_PORGI 21 501 SEQRES 1 A 481 GLU LEU ASP ARG ASP PRO GLU GLY LYS ASP PHE GLN GLN SEQRES 2 A 481 PRO TYR THR SER PHE VAL GLN THR LYS GLN ASN ARG ASP SEQRES 3 A 481 GLY LEU TYR ALA LEU LEU ARG ASN THR GLU ASN PRO ARG SEQRES 4 A 481 MSE HIS PHE TYR GLN GLU LEU GLN SER ASP MSE TYR CYS SEQRES 5 A 481 THR THR ILE THR ASP GLY ASN SER LEU ALA PRO PHE VAL SEQRES 6 A 481 ASN TRP ASP LEU GLY ILE LEU ASN ASP HIS GLY ARG ALA SEQRES 7 A 481 ASP GLU ASP GLU VAL SER GLY ILE ALA GLY TYR TYR PHE SEQRES 8 A 481 VAL TYR ASN ARG LEU ASN GLN GLN ALA ASN ALA PHE VAL SEQRES 9 A 481 ASN ASN THR GLU ALA ALA LEU GLN ASN GLN VAL TYR LYS SEQRES 10 A 481 ASN SER THR GLU ILE ALA ASN ALA LYS SER PHE LEU ALA SEQRES 11 A 481 GLU GLY LYS VAL LEU GLN ALA LEU ALA ILE TRP ARG LEU SEQRES 12 A 481 MSE ASP ARG PHE SER PHE HIS GLU SER VAL THR GLU VAL SEQRES 13 A 481 ASN SER GLY ALA LYS ASP LEU GLY VAL ILE LEU LEU LYS SEQRES 14 A 481 GLU TYR ASN PRO GLY TYR ILE GLY PRO ARG ALA THR LYS SEQRES 15 A 481 ALA GLN CYS TYR ASP TYR ILE LEU SER ARG LEU SER GLU SEQRES 16 A 481 ALA ILE GLU VAL LEU PRO GLU ASN ARG GLU SER VAL LEU SEQRES 17 A 481 TYR VAL SER ARG ASP TYR ALA TYR ALA LEU ARG ALA ARG SEQRES 18 A 481 ILE TYR LEU ALA LEU GLY GLU TYR GLY LYS ALA ALA ALA SEQRES 19 A 481 ASP ALA LYS MSE VAL VAL ASP LYS TYR PRO LEU ILE GLY SEQRES 20 A 481 ALA ALA ASP ALA SER GLU PHE GLU ASN ILE TYR ARG SER SEQRES 21 A 481 ASP ALA ASN ASN PRO GLU ILE ILE PHE ARG GLY PHE ALA SEQRES 22 A 481 SER ALA THR LEU GLY SER PHE THR ALA THR THR LEU ASN SEQRES 23 A 481 GLY ALA ALA PRO ALA GLY LYS ASP ILE LYS TYR ASN PRO SEQRES 24 A 481 SER ALA VAL PRO PHE GLN TRP VAL VAL ASP LEU TYR GLU SEQRES 25 A 481 ASN GLU ASP PHE ARG LYS SER VAL TYR ILE ALA LYS VAL SEQRES 26 A 481 VAL LYS LYS ASP LYS GLY TYR LEU VAL ASN LYS PHE LEU SEQRES 27 A 481 GLU ASP LYS ALA TYR ARG ASP VAL GLN ASP LYS PRO ASN SEQRES 28 A 481 LEU LYS VAL GLY ALA ARG TYR PHE SER VAL ALA GLU VAL SEQRES 29 A 481 TYR LEU ILE LEU VAL GLU SER ALA LEU GLN THR GLY ASP SEQRES 30 A 481 THR PRO THR ALA GLU LYS TYR LEU LYS ALA LEU SER LYS SEQRES 31 A 481 ALA ARG GLY ALA GLU VAL SER VAL VAL ASN MSE GLU ALA SEQRES 32 A 481 LEU GLN ALA GLU ARG THR ARG GLU LEU ILE GLY GLU GLY SEQRES 33 A 481 SER ARG LEU ARG ASP MSE VAL ARG TRP SER ILE PRO ASN SEQRES 34 A 481 ASN HIS ASP ALA PHE GLU THR GLN PRO GLY LEU GLU GLY SEQRES 35 A 481 PHE ALA ASN THR THR PRO LEU LYS ALA GLN ALA PRO VAL SEQRES 36 A 481 GLY PHE TYR ALA TYR THR TRP GLU PHE PRO GLN ARG ASP SEQRES 37 A 481 ARG GLN THR ASN PRO GLN LEU ILE LYS ASN TRP PRO ILE SEQRES 1 B 481 GLU LEU ASP ARG ASP PRO GLU GLY LYS ASP PHE GLN GLN SEQRES 2 B 481 PRO TYR THR SER PHE VAL GLN THR LYS GLN ASN ARG ASP SEQRES 3 B 481 GLY LEU TYR ALA LEU LEU ARG ASN THR GLU ASN PRO ARG SEQRES 4 B 481 MSE HIS PHE TYR GLN GLU LEU GLN SER ASP MSE TYR CYS SEQRES 5 B 481 THR THR ILE THR ASP GLY ASN SER LEU ALA PRO PHE VAL SEQRES 6 B 481 ASN TRP ASP LEU GLY ILE LEU ASN ASP HIS GLY ARG ALA SEQRES 7 B 481 ASP GLU ASP GLU VAL SER GLY ILE ALA GLY TYR TYR PHE SEQRES 8 B 481 VAL TYR ASN ARG LEU ASN GLN GLN ALA ASN ALA PHE VAL SEQRES 9 B 481 ASN ASN THR GLU ALA ALA LEU GLN ASN GLN VAL TYR LYS SEQRES 10 B 481 ASN SER THR GLU ILE ALA ASN ALA LYS SER PHE LEU ALA SEQRES 11 B 481 GLU GLY LYS VAL LEU GLN ALA LEU ALA ILE TRP ARG LEU SEQRES 12 B 481 MSE ASP ARG PHE SER PHE HIS GLU SER VAL THR GLU VAL SEQRES 13 B 481 ASN SER GLY ALA LYS ASP LEU GLY VAL ILE LEU LEU LYS SEQRES 14 B 481 GLU TYR ASN PRO GLY TYR ILE GLY PRO ARG ALA THR LYS SEQRES 15 B 481 ALA GLN CYS TYR ASP TYR ILE LEU SER ARG LEU SER GLU SEQRES 16 B 481 ALA ILE GLU VAL LEU PRO GLU ASN ARG GLU SER VAL LEU SEQRES 17 B 481 TYR VAL SER ARG ASP TYR ALA TYR ALA LEU ARG ALA ARG SEQRES 18 B 481 ILE TYR LEU ALA LEU GLY GLU TYR GLY LYS ALA ALA ALA SEQRES 19 B 481 ASP ALA LYS MSE VAL VAL ASP LYS TYR PRO LEU ILE GLY SEQRES 20 B 481 ALA ALA ASP ALA SER GLU PHE GLU ASN ILE TYR ARG SER SEQRES 21 B 481 ASP ALA ASN ASN PRO GLU ILE ILE PHE ARG GLY PHE ALA SEQRES 22 B 481 SER ALA THR LEU GLY SER PHE THR ALA THR THR LEU ASN SEQRES 23 B 481 GLY ALA ALA PRO ALA GLY LYS ASP ILE LYS TYR ASN PRO SEQRES 24 B 481 SER ALA VAL PRO PHE GLN TRP VAL VAL ASP LEU TYR GLU SEQRES 25 B 481 ASN GLU ASP PHE ARG LYS SER VAL TYR ILE ALA LYS VAL SEQRES 26 B 481 VAL LYS LYS ASP LYS GLY TYR LEU VAL ASN LYS PHE LEU SEQRES 27 B 481 GLU ASP LYS ALA TYR ARG ASP VAL GLN ASP LYS PRO ASN SEQRES 28 B 481 LEU LYS VAL GLY ALA ARG TYR PHE SER VAL ALA GLU VAL SEQRES 29 B 481 TYR LEU ILE LEU VAL GLU SER ALA LEU GLN THR GLY ASP SEQRES 30 B 481 THR PRO THR ALA GLU LYS TYR LEU LYS ALA LEU SER LYS SEQRES 31 B 481 ALA ARG GLY ALA GLU VAL SER VAL VAL ASN MSE GLU ALA SEQRES 32 B 481 LEU GLN ALA GLU ARG THR ARG GLU LEU ILE GLY GLU GLY SEQRES 33 B 481 SER ARG LEU ARG ASP MSE VAL ARG TRP SER ILE PRO ASN SEQRES 34 B 481 ASN HIS ASP ALA PHE GLU THR GLN PRO GLY LEU GLU GLY SEQRES 35 B 481 PHE ALA ASN THR THR PRO LEU LYS ALA GLN ALA PRO VAL SEQRES 36 B 481 GLY PHE TYR ALA TYR THR TRP GLU PHE PRO GLN ARG ASP SEQRES 37 B 481 ARG GLN THR ASN PRO GLN LEU ILE LYS ASN TRP PRO ILE MODRES 5CX8 MSE A 60 MET MODIFIED RESIDUE MODRES 5CX8 MSE A 70 MET MODIFIED RESIDUE MODRES 5CX8 MSE A 164 MET MODIFIED RESIDUE MODRES 5CX8 MSE A 258 MET MODIFIED RESIDUE MODRES 5CX8 MSE A 421 MET MODIFIED RESIDUE MODRES 5CX8 MSE A 442 MET MODIFIED RESIDUE MODRES 5CX8 MSE B 60 MET MODIFIED RESIDUE MODRES 5CX8 MSE B 70 MET MODIFIED RESIDUE MODRES 5CX8 MSE B 164 MET MODIFIED RESIDUE MODRES 5CX8 MSE B 258 MET MODIFIED RESIDUE MODRES 5CX8 MSE B 421 MET MODIFIED RESIDUE MODRES 5CX8 MSE B 442 MET MODIFIED RESIDUE HET MSE A 60 8 HET MSE A 70 8 HET MSE A 164 8 HET MSE A 258 8 HET MSE A 421 8 HET MSE A 442 8 HET MSE B 60 8 HET MSE B 70 8 HET MSE B 164 8 HET MSE B 258 8 HET MSE B 421 8 HET MSE B 442 8 HET 3DO A 601 11 HET TG6 A 602 32 HET GOL A 603 6 HET GOL A 604 6 HET ACT A 605 4 HET ACT A 606 4 HET RP3 B 601 13 HET GOL B 602 6 HETNAM MSE SELENOMETHIONINE HETNAM 3DO 3-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM TG6 6-O-PHOSPHONO-D-TAGATOSE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM RP3 3-DEOXY-5-O-PHOSPHONO-BETA-D-RIBOFURANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 3DO C6 H12 O5 FORMUL 4 TG6 C6 H13 O9 P FORMUL 5 GOL 3(C3 H8 O3) FORMUL 7 ACT 2(C2 H3 O2 1-) FORMUL 9 RP3 C5 H11 O7 P FORMUL 11 HOH *509(H2 O) HELIX 1 AA1 SER A 37 ASN A 54 1 18 HELIX 2 AA2 ASN A 57 MSE A 60 5 4 HELIX 3 AA3 HIS A 61 GLN A 67 1 7 HELIX 4 AA4 LEU A 81 ASN A 86 1 6 HELIX 5 AA5 ASP A 88 ASN A 93 1 6 HELIX 6 AA6 GLY A 105 ASN A 133 1 29 HELIX 7 AA7 ASN A 138 SER A 168 1 31 HELIX 8 AA8 THR A 201 GLU A 218 1 18 HELIX 9 AA9 SER A 231 GLY A 247 1 17 HELIX 10 AB1 GLU A 248 MSE A 258 1 11 HELIX 11 AB2 ASP A 270 ARG A 279 1 10 HELIX 12 AB3 PHE A 324 LEU A 330 1 7 HELIX 13 AB4 ASP A 335 VAL A 340 5 6 HELIX 14 AB5 ASP A 360 ARG A 364 5 5 HELIX 15 AB6 VAL A 381 THR A 395 1 15 HELIX 16 AB7 ASP A 397 ARG A 412 1 16 HELIX 17 AB8 ASN A 420 ILE A 433 1 14 HELIX 18 AB9 SER A 437 TRP A 445 1 9 HELIX 19 AC1 ASN A 450 PHE A 454 5 5 HELIX 20 AC2 GLN A 457 GLU A 461 5 5 HELIX 21 AC3 PHE A 477 THR A 481 5 5 HELIX 22 AC4 PRO A 485 ASN A 492 1 8 HELIX 23 AC5 SER B 37 ASN B 54 1 18 HELIX 24 AC6 ASN B 57 MSE B 60 5 4 HELIX 25 AC7 HIS B 61 GLN B 67 1 7 HELIX 26 AC8 LEU B 81 ASN B 86 1 6 HELIX 27 AC9 ASP B 88 ASN B 93 1 6 HELIX 28 AD1 GLY B 105 ASN B 133 1 29 HELIX 29 AD2 ASN B 138 SER B 168 1 31 HELIX 30 AD3 THR B 201 GLU B 218 1 18 HELIX 31 AD4 SER B 231 GLY B 247 1 17 HELIX 32 AD5 GLU B 248 MSE B 258 1 11 HELIX 33 AD6 ASP B 270 ARG B 279 1 10 HELIX 34 AD7 PHE B 324 ASP B 329 1 6 HELIX 35 AD8 ASP B 335 SER B 339 5 5 HELIX 36 AD9 ASP B 360 ARG B 364 5 5 HELIX 37 AE1 VAL B 381 THR B 395 1 15 HELIX 38 AE2 ASP B 397 ARG B 412 1 16 HELIX 39 AE3 ASN B 420 ILE B 433 1 14 HELIX 40 AE4 SER B 437 TRP B 445 1 9 HELIX 41 AE5 ASN B 450 PHE B 454 5 5 HELIX 42 AE6 GLN B 457 GLU B 461 5 5 HELIX 43 AE7 PHE B 477 THR B 481 5 5 HELIX 44 AE8 PRO B 485 ASN B 492 1 8 SHEET 1 AA1 2 TYR A 71 THR A 73 0 SHEET 2 AA1 2 ALA A 321 PRO A 323 -1 O VAL A 322 N CYS A 72 SHEET 1 AA2 2 ARG A 97 ALA A 98 0 SHEET 2 AA2 2 VAL A 103 SER A 104 -1 O SER A 104 N ARG A 97 SHEET 1 AA3 2 ILE A 287 ARG A 290 0 SHEET 2 AA3 2 ARG A 377 SER A 380 -1 O TYR A 378 N PHE A 289 SHEET 1 AA4 2 PHE A 300 THR A 301 0 SHEET 2 AA4 2 LYS A 373 VAL A 374 -1 O VAL A 374 N PHE A 300 SHEET 1 AA5 2 ALA A 308 ALA A 311 0 SHEET 2 AA5 2 ASP A 314 TYR A 317 -1 O LYS A 316 N ALA A 309 SHEET 1 AA6 2 ILE A 342 VAL A 346 0 SHEET 2 AA6 2 GLY A 351 VAL A 354 -1 O GLY A 351 N VAL A 346 SHEET 1 AA7 2 TYR B 71 THR B 73 0 SHEET 2 AA7 2 ALA B 321 PRO B 323 -1 O VAL B 322 N CYS B 72 SHEET 1 AA8 2 ARG B 97 ALA B 98 0 SHEET 2 AA8 2 VAL B 103 SER B 104 -1 O SER B 104 N ARG B 97 SHEET 1 AA9 2 ILE B 287 ARG B 290 0 SHEET 2 AA9 2 ARG B 377 SER B 380 -1 O TYR B 378 N PHE B 289 SHEET 1 AB1 2 PHE B 300 THR B 301 0 SHEET 2 AB1 2 LYS B 373 VAL B 374 -1 O VAL B 374 N PHE B 300 SHEET 1 AB2 2 ALA B 308 ALA B 311 0 SHEET 2 AB2 2 ASP B 314 TYR B 317 -1 O LYS B 316 N ALA B 309 SHEET 1 AB3 2 ILE B 342 VAL B 346 0 SHEET 2 AB3 2 GLY B 351 VAL B 354 -1 O GLY B 351 N VAL B 346 LINK C ARG A 59 N MSE A 60 1555 1555 1.35 LINK C MSE A 60 N HIS A 61 1555 1555 1.35 LINK C ASP A 69 N MSE A 70 1555 1555 1.34 LINK C MSE A 70 N TYR A 71 1555 1555 1.34 LINK C LEU A 163 N MSE A 164 1555 1555 1.35 LINK C MSE A 164 N ASP A 165 1555 1555 1.32 LINK C LYS A 257 N MSE A 258 1555 1555 1.35 LINK C MSE A 258 N VAL A 259 1555 1555 1.35 LINK C ASN A 420 N MSE A 421 1555 1555 1.34 LINK C MSE A 421 N GLU A 422 1555 1555 1.33 LINK C ASP A 441 N MSE A 442 1555 1555 1.35 LINK C MSE A 442 N VAL A 443 1555 1555 1.35 LINK C ARG B 59 N MSE B 60 1555 1555 1.35 LINK C MSE B 60 N HIS B 61 1555 1555 1.34 LINK C ASP B 69 N MSE B 70 1555 1555 1.35 LINK C MSE B 70 N TYR B 71 1555 1555 1.34 LINK C LEU B 163 N MSE B 164 1555 1555 1.36 LINK C MSE B 164 N ASP B 165 1555 1555 1.33 LINK C LYS B 257 N MSE B 258 1555 1555 1.34 LINK C MSE B 258 N VAL B 259 1555 1555 1.35 LINK C ASN B 420 N MSE B 421 1555 1555 1.36 LINK C MSE B 421 N GLU B 422 1555 1555 1.35 LINK C ASP B 441 N MSE B 442 1555 1555 1.35 LINK C MSE B 442 N VAL B 443 1555 1555 1.35 CRYST1 56.640 184.740 144.310 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017655 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005413 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006930 0.00000