HEADER TRANSFERASE 28-JUL-15 5CX9 TITLE CRYSTAL STRUCTURE OF CK2ALPHA WITH (METHYL 4-((3-(3-CHLORO-4-(PHENYL) TITLE 2 BENZYLAMINO)PROPYL)AMINO)-4-OXOBUTANOATE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASEIN KINASE II SUBUNIT ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-329; COMPND 5 SYNONYM: CK II ALPHA; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSNK2A1, CK2A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHAT4 KEYWDS CK2ALPHA, CK2A, FRAGMENT BASED DRUG DISCOVERY, HIGH CONCENTRATION KEYWDS 2 SCREENING, SELECTIVE ATP COMPETITIVE INHIBITORS, SURFACE ENTROPHY KEYWDS 3 REDUCTION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.BREAR,C.DE FUSCO,K.H.GEORGIOU,D.SPRING,M.HYVONEN REVDAT 4 10-JAN-24 5CX9 1 REMARK REVDAT 3 07-JUN-17 5CX9 1 JRNL REVDAT 2 24-MAY-17 5CX9 1 JRNL REVDAT 1 30-NOV-16 5CX9 0 JRNL AUTH C.DE FUSCO,P.BREAR,J.IEGRE,K.H.GEORGIOU,H.F.SORE,M.HYVONEN, JRNL AUTH 2 D.R.SPRING JRNL TITL A FRAGMENT-BASED APPROACH LEADING TO THE DISCOVERY OF A JRNL TITL 2 NOVEL BINDING SITE AND THE SELECTIVE CK2 INHIBITOR CAM4066. JRNL REF BIOORG. MED. CHEM. V. 25 3471 2017 JRNL REFN ESSN 1464-3391 JRNL PMID 28495381 JRNL DOI 10.1016/J.BMC.2017.04.037 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 77209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3904 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.77 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.36 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5338 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2239 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5070 REMARK 3 BIN R VALUE (WORKING SET) : 0.2232 REMARK 3 BIN FREE R VALUE : 0.2363 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.02 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 268 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5510 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.03180 REMARK 3 B22 (A**2) : -8.27590 REMARK 3 B33 (A**2) : 6.24410 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.245 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.110 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.096 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.110 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.096 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5879 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7958 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2083 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 148 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 926 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5879 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 696 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6898 ; 0.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.38 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.07 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 15.7303 143.0780 356.1810 REMARK 3 T TENSOR REMARK 3 T11: -0.0914 T22: -0.0511 REMARK 3 T33: -0.0413 T12: -0.0329 REMARK 3 T13: 0.0080 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.3699 L22: 0.5525 REMARK 3 L33: 0.8991 L12: 0.0208 REMARK 3 L13: 0.0338 L23: -0.1935 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: -0.0678 S13: -0.0009 REMARK 3 S21: 0.0373 S22: -0.0496 S23: 0.0252 REMARK 3 S31: -0.0398 S32: 0.0242 S33: 0.0016 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -6.1755 154.1480 396.6700 REMARK 3 T TENSOR REMARK 3 T11: -0.0772 T22: 0.1032 REMARK 3 T33: -0.1822 T12: -0.0337 REMARK 3 T13: 0.0369 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.2615 L22: 0.8675 REMARK 3 L33: 2.0688 L12: 0.0932 REMARK 3 L13: 1.2217 L23: -0.4068 REMARK 3 S TENSOR REMARK 3 S11: -0.0500 S12: -0.5268 S13: 0.0237 REMARK 3 S21: -0.2263 S22: 0.0971 S23: -0.0928 REMARK 3 S31: 0.1654 S32: -0.6621 S33: -0.0471 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 10.3028 144.2050 370.9010 REMARK 3 T TENSOR REMARK 3 T11: -0.0008 T22: -0.0117 REMARK 3 T33: 0.0461 T12: -0.0924 REMARK 3 T13: 0.0412 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 1.0570 L12: 0.0124 REMARK 3 L13: -0.5281 L23: 1.4197 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: -0.3746 S13: 0.0694 REMARK 3 S21: 0.3402 S22: -0.0713 S23: -0.0537 REMARK 3 S31: -0.0363 S32: -0.0662 S33: 0.0506 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CX9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9174 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.14 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77304 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.732 REMARK 200 RESOLUTION RANGE LOW (A) : 46.456 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.92600 REMARK 200 R SYM FOR SHELL (I) : 0.92600 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3WAR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 107MM MES PH 6.5, 29% GLYCEROL REMARK 280 ETHOXYLATE, 1 M AMMONIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 167.25600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 167.25600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.34200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.06700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.34200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.06700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 167.25600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.34200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.06700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 167.25600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.34200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 34.06700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 627 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -22 REMARK 465 SER A -21 REMARK 465 MET A -20 REMARK 465 ASP A -19 REMARK 465 ILE A -18 REMARK 465 GLU A -17 REMARK 465 PHE A -16 REMARK 465 ASP A -15 REMARK 465 ASP A -14 REMARK 465 ASP A -13 REMARK 465 ALA A -12 REMARK 465 ASP A -11 REMARK 465 ASP A -10 REMARK 465 ASP A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 SER A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 GLY B -22 REMARK 465 SER B -21 REMARK 465 MET B -20 REMARK 465 ASP B -19 REMARK 465 ILE B -18 REMARK 465 GLU B -17 REMARK 465 PHE B -16 REMARK 465 ASP B -15 REMARK 465 ASP B -14 REMARK 465 ASP B -13 REMARK 465 ALA B -12 REMARK 465 ASP B -11 REMARK 465 ASP B -10 REMARK 465 ASP B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 SER B -5 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 465 VAL B 328 REMARK 465 LYS B 329 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 36 C9 551 B 404 1.61 REMARK 500 NE2 GLN B 36 OD1 ASP B 103 1.65 REMARK 500 OE1 GLN A 36 C10 551 A 406 1.87 REMARK 500 OE1 GLN A 36 C8 551 A 406 1.89 REMARK 500 OE1 GLN B 36 C10 551 B 404 2.00 REMARK 500 NE2 GLN B 36 CB ASP B 103 2.01 REMARK 500 NH2 ARG B 10 OE2 GLU B 317 2.14 REMARK 500 NE2 GLN B 36 CA ASP B 103 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 42 -62.16 -98.25 REMARK 500 ARG A 107 15.23 59.85 REMARK 500 ASP A 156 41.47 -150.03 REMARK 500 ASP A 175 77.69 51.69 REMARK 500 ALA A 193 168.49 62.14 REMARK 500 ALA A 193 168.46 62.14 REMARK 500 MET A 208 53.60 -90.51 REMARK 500 VAL B 42 -60.14 -96.27 REMARK 500 TYR B 125 -5.01 -56.63 REMARK 500 ASP B 156 41.13 -150.42 REMARK 500 ASP B 175 77.17 51.28 REMARK 500 ALA B 193 168.99 62.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS A 18 -13.02 REMARK 500 HIS A 18 -13.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 551 A 406 REMARK 610 551 A 407 REMARK 610 551 B 404 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 551 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 551 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 551 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 551 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 551 B 404 DBREF 5CX9 A 2 329 UNP P68400 CSK21_HUMAN 2 329 DBREF 5CX9 B 2 329 UNP P68400 CSK21_HUMAN 2 329 SEQADV 5CX9 GLY A -22 UNP P68400 EXPRESSION TAG SEQADV 5CX9 SER A -21 UNP P68400 EXPRESSION TAG SEQADV 5CX9 MET A -20 UNP P68400 EXPRESSION TAG SEQADV 5CX9 ASP A -19 UNP P68400 EXPRESSION TAG SEQADV 5CX9 ILE A -18 UNP P68400 EXPRESSION TAG SEQADV 5CX9 GLU A -17 UNP P68400 EXPRESSION TAG SEQADV 5CX9 PHE A -16 UNP P68400 EXPRESSION TAG SEQADV 5CX9 ASP A -15 UNP P68400 EXPRESSION TAG SEQADV 5CX9 ASP A -14 UNP P68400 EXPRESSION TAG SEQADV 5CX9 ASP A -13 UNP P68400 EXPRESSION TAG SEQADV 5CX9 ALA A -12 UNP P68400 EXPRESSION TAG SEQADV 5CX9 ASP A -11 UNP P68400 EXPRESSION TAG SEQADV 5CX9 ASP A -10 UNP P68400 EXPRESSION TAG SEQADV 5CX9 ASP A -9 UNP P68400 EXPRESSION TAG SEQADV 5CX9 GLY A -8 UNP P68400 EXPRESSION TAG SEQADV 5CX9 SER A -7 UNP P68400 EXPRESSION TAG SEQADV 5CX9 GLY A -6 UNP P68400 EXPRESSION TAG SEQADV 5CX9 SER A -5 UNP P68400 EXPRESSION TAG SEQADV 5CX9 GLY A -4 UNP P68400 EXPRESSION TAG SEQADV 5CX9 SER A -3 UNP P68400 EXPRESSION TAG SEQADV 5CX9 GLY A -2 UNP P68400 EXPRESSION TAG SEQADV 5CX9 SER A -1 UNP P68400 EXPRESSION TAG SEQADV 5CX9 GLY A 0 UNP P68400 EXPRESSION TAG SEQADV 5CX9 SER A 1 UNP P68400 EXPRESSION TAG SEQADV 5CX9 SER A 21 UNP P68400 ARG 21 ENGINEERED MUTATION SEQADV 5CX9 GLY B -22 UNP P68400 EXPRESSION TAG SEQADV 5CX9 SER B -21 UNP P68400 EXPRESSION TAG SEQADV 5CX9 MET B -20 UNP P68400 EXPRESSION TAG SEQADV 5CX9 ASP B -19 UNP P68400 EXPRESSION TAG SEQADV 5CX9 ILE B -18 UNP P68400 EXPRESSION TAG SEQADV 5CX9 GLU B -17 UNP P68400 EXPRESSION TAG SEQADV 5CX9 PHE B -16 UNP P68400 EXPRESSION TAG SEQADV 5CX9 ASP B -15 UNP P68400 EXPRESSION TAG SEQADV 5CX9 ASP B -14 UNP P68400 EXPRESSION TAG SEQADV 5CX9 ASP B -13 UNP P68400 EXPRESSION TAG SEQADV 5CX9 ALA B -12 UNP P68400 EXPRESSION TAG SEQADV 5CX9 ASP B -11 UNP P68400 EXPRESSION TAG SEQADV 5CX9 ASP B -10 UNP P68400 EXPRESSION TAG SEQADV 5CX9 ASP B -9 UNP P68400 EXPRESSION TAG SEQADV 5CX9 GLY B -8 UNP P68400 EXPRESSION TAG SEQADV 5CX9 SER B -7 UNP P68400 EXPRESSION TAG SEQADV 5CX9 GLY B -6 UNP P68400 EXPRESSION TAG SEQADV 5CX9 SER B -5 UNP P68400 EXPRESSION TAG SEQADV 5CX9 GLY B -4 UNP P68400 EXPRESSION TAG SEQADV 5CX9 SER B -3 UNP P68400 EXPRESSION TAG SEQADV 5CX9 GLY B -2 UNP P68400 EXPRESSION TAG SEQADV 5CX9 SER B -1 UNP P68400 EXPRESSION TAG SEQADV 5CX9 GLY B 0 UNP P68400 EXPRESSION TAG SEQADV 5CX9 SER B 1 UNP P68400 EXPRESSION TAG SEQADV 5CX9 SER B 21 UNP P68400 ARG 21 ENGINEERED MUTATION SEQRES 1 A 352 GLY SER MET ASP ILE GLU PHE ASP ASP ASP ALA ASP ASP SEQRES 2 A 352 ASP GLY SER GLY SER GLY SER GLY SER GLY SER SER GLY SEQRES 3 A 352 PRO VAL PRO SER ARG ALA ARG VAL TYR THR ASP VAL ASN SEQRES 4 A 352 THR HIS ARG PRO SER GLU TYR TRP ASP TYR GLU SER HIS SEQRES 5 A 352 VAL VAL GLU TRP GLY ASN GLN ASP ASP TYR GLN LEU VAL SEQRES 6 A 352 ARG LYS LEU GLY ARG GLY LYS TYR SER GLU VAL PHE GLU SEQRES 7 A 352 ALA ILE ASN ILE THR ASN ASN GLU LYS VAL VAL VAL LYS SEQRES 8 A 352 ILE LEU LYS PRO VAL LYS LYS LYS LYS ILE LYS ARG GLU SEQRES 9 A 352 ILE LYS ILE LEU GLU ASN LEU ARG GLY GLY PRO ASN ILE SEQRES 10 A 352 ILE THR LEU ALA ASP ILE VAL LYS ASP PRO VAL SER ARG SEQRES 11 A 352 THR PRO ALA LEU VAL PHE GLU HIS VAL ASN ASN THR ASP SEQRES 12 A 352 PHE LYS GLN LEU TYR GLN THR LEU THR ASP TYR ASP ILE SEQRES 13 A 352 ARG PHE TYR MET TYR GLU ILE LEU LYS ALA LEU ASP TYR SEQRES 14 A 352 CYS HIS SER MET GLY ILE MET HIS ARG ASP VAL LYS PRO SEQRES 15 A 352 HIS ASN VAL MET ILE ASP HIS GLU HIS ARG LYS LEU ARG SEQRES 16 A 352 LEU ILE ASP TRP GLY LEU ALA GLU PHE TYR HIS PRO GLY SEQRES 17 A 352 GLN GLU TYR ASN VAL ARG VAL ALA SER ARG TYR PHE LYS SEQRES 18 A 352 GLY PRO GLU LEU LEU VAL ASP TYR GLN MET TYR ASP TYR SEQRES 19 A 352 SER LEU ASP MET TRP SER LEU GLY CYS MET LEU ALA SER SEQRES 20 A 352 MET ILE PHE ARG LYS GLU PRO PHE PHE HIS GLY HIS ASP SEQRES 21 A 352 ASN TYR ASP GLN LEU VAL ARG ILE ALA LYS VAL LEU GLY SEQRES 22 A 352 THR GLU ASP LEU TYR ASP TYR ILE ASP LYS TYR ASN ILE SEQRES 23 A 352 GLU LEU ASP PRO ARG PHE ASN ASP ILE LEU GLY ARG HIS SEQRES 24 A 352 SER ARG LYS ARG TRP GLU ARG PHE VAL HIS SER GLU ASN SEQRES 25 A 352 GLN HIS LEU VAL SER PRO GLU ALA LEU ASP PHE LEU ASP SEQRES 26 A 352 LYS LEU LEU ARG TYR ASP HIS GLN SER ARG LEU THR ALA SEQRES 27 A 352 ARG GLU ALA MET GLU HIS PRO TYR PHE TYR THR VAL VAL SEQRES 28 A 352 LYS SEQRES 1 B 352 GLY SER MET ASP ILE GLU PHE ASP ASP ASP ALA ASP ASP SEQRES 2 B 352 ASP GLY SER GLY SER GLY SER GLY SER GLY SER SER GLY SEQRES 3 B 352 PRO VAL PRO SER ARG ALA ARG VAL TYR THR ASP VAL ASN SEQRES 4 B 352 THR HIS ARG PRO SER GLU TYR TRP ASP TYR GLU SER HIS SEQRES 5 B 352 VAL VAL GLU TRP GLY ASN GLN ASP ASP TYR GLN LEU VAL SEQRES 6 B 352 ARG LYS LEU GLY ARG GLY LYS TYR SER GLU VAL PHE GLU SEQRES 7 B 352 ALA ILE ASN ILE THR ASN ASN GLU LYS VAL VAL VAL LYS SEQRES 8 B 352 ILE LEU LYS PRO VAL LYS LYS LYS LYS ILE LYS ARG GLU SEQRES 9 B 352 ILE LYS ILE LEU GLU ASN LEU ARG GLY GLY PRO ASN ILE SEQRES 10 B 352 ILE THR LEU ALA ASP ILE VAL LYS ASP PRO VAL SER ARG SEQRES 11 B 352 THR PRO ALA LEU VAL PHE GLU HIS VAL ASN ASN THR ASP SEQRES 12 B 352 PHE LYS GLN LEU TYR GLN THR LEU THR ASP TYR ASP ILE SEQRES 13 B 352 ARG PHE TYR MET TYR GLU ILE LEU LYS ALA LEU ASP TYR SEQRES 14 B 352 CYS HIS SER MET GLY ILE MET HIS ARG ASP VAL LYS PRO SEQRES 15 B 352 HIS ASN VAL MET ILE ASP HIS GLU HIS ARG LYS LEU ARG SEQRES 16 B 352 LEU ILE ASP TRP GLY LEU ALA GLU PHE TYR HIS PRO GLY SEQRES 17 B 352 GLN GLU TYR ASN VAL ARG VAL ALA SER ARG TYR PHE LYS SEQRES 18 B 352 GLY PRO GLU LEU LEU VAL ASP TYR GLN MET TYR ASP TYR SEQRES 19 B 352 SER LEU ASP MET TRP SER LEU GLY CYS MET LEU ALA SER SEQRES 20 B 352 MET ILE PHE ARG LYS GLU PRO PHE PHE HIS GLY HIS ASP SEQRES 21 B 352 ASN TYR ASP GLN LEU VAL ARG ILE ALA LYS VAL LEU GLY SEQRES 22 B 352 THR GLU ASP LEU TYR ASP TYR ILE ASP LYS TYR ASN ILE SEQRES 23 B 352 GLU LEU ASP PRO ARG PHE ASN ASP ILE LEU GLY ARG HIS SEQRES 24 B 352 SER ARG LYS ARG TRP GLU ARG PHE VAL HIS SER GLU ASN SEQRES 25 B 352 GLN HIS LEU VAL SER PRO GLU ALA LEU ASP PHE LEU ASP SEQRES 26 B 352 LYS LEU LEU ARG TYR ASP HIS GLN SER ARG LEU THR ALA SEQRES 27 B 352 ARG GLU ALA MET GLU HIS PRO TYR PHE TYR THR VAL VAL SEQRES 28 B 352 LYS HET ACT A 401 4 HET ACT A 402 4 HET ACT A 403 4 HET ACT A 404 4 HET 551 A 405 26 HET 551 A 406 15 HET 551 A 407 15 HET PO4 A 408 5 HET ACT B 401 4 HET ACT B 402 4 HET 551 B 403 26 HET 551 B 404 15 HETNAM ACT ACETATE ION HETNAM 551 METHYL 3-[(3-{[(2-CHLOROBIPHENYL-4-YL) HETNAM 2 551 METHYL]AMINO}PROPYL)AMINO]-3-OXOPROPANOATE HETNAM PO4 PHOSPHATE ION FORMUL 3 ACT 6(C2 H3 O2 1-) FORMUL 7 551 5(C20 H23 CL N2 O3) FORMUL 10 PO4 O4 P 3- FORMUL 15 HOH *313(H2 O) HELIX 1 AA1 PRO A 20 ASP A 25 1 6 HELIX 2 AA2 TYR A 26 HIS A 29 5 4 HELIX 3 AA3 LYS A 74 ARG A 89 1 16 HELIX 4 AA4 THR A 129 MET A 150 1 22 HELIX 5 AA5 LYS A 158 HIS A 160 5 3 HELIX 6 AA6 ASP A 175 ALA A 179 5 5 HELIX 7 AA7 SER A 194 LYS A 198 5 5 HELIX 8 AA8 GLY A 199 VAL A 204 1 6 HELIX 9 AA9 TYR A 211 ARG A 228 1 18 HELIX 10 AB1 ASP A 237 GLY A 250 1 14 HELIX 11 AB2 GLY A 250 TYR A 261 1 12 HELIX 12 AB3 ASP A 266 ASN A 270 5 5 HELIX 13 AB4 ARG A 280 VAL A 285 5 6 HELIX 14 AB5 ASN A 289 VAL A 293 5 5 HELIX 15 AB6 SER A 294 LEU A 305 1 12 HELIX 16 AB7 ASP A 308 ARG A 312 5 5 HELIX 17 AB8 THR A 314 GLU A 320 1 7 HELIX 18 AB9 HIS A 321 TYR A 325 5 5 HELIX 19 AC1 PRO B 20 ASP B 25 1 6 HELIX 20 AC2 TYR B 26 HIS B 29 5 4 HELIX 21 AC3 ASN B 35 ASP B 37 5 3 HELIX 22 AC4 LYS B 74 ARG B 89 1 16 HELIX 23 AC5 ASP B 120 LEU B 128 1 9 HELIX 24 AC6 THR B 129 MET B 150 1 22 HELIX 25 AC7 LYS B 158 HIS B 160 5 3 HELIX 26 AC8 HIS B 166 ARG B 169 5 4 HELIX 27 AC9 ASP B 175 ALA B 179 5 5 HELIX 28 AD1 SER B 194 LYS B 198 5 5 HELIX 29 AD2 GLY B 199 VAL B 204 1 6 HELIX 30 AD3 TYR B 211 ARG B 228 1 18 HELIX 31 AD4 ASP B 237 GLY B 250 1 14 HELIX 32 AD5 GLY B 250 TYR B 261 1 12 HELIX 33 AD6 ASP B 266 ASN B 270 5 5 HELIX 34 AD7 ARG B 280 VAL B 285 5 6 HELIX 35 AD8 ASN B 289 VAL B 293 5 5 HELIX 36 AD9 SER B 294 LEU B 305 1 12 HELIX 37 AE1 ASP B 308 ARG B 312 5 5 HELIX 38 AE2 THR B 314 GLU B 320 1 7 HELIX 39 AE3 HIS B 321 TYR B 325 5 5 SHEET 1 AA1 6 GLY A 34 ASN A 35 0 SHEET 2 AA1 6 LEU A 97 LYS A 102 1 O ILE A 100 N GLY A 34 SHEET 3 AA1 6 PRO A 109 GLU A 114 -1 O VAL A 112 N ALA A 98 SHEET 4 AA1 6 GLU A 63 LEU A 70 -1 N VAL A 66 O PHE A 113 SHEET 5 AA1 6 SER A 51 ASN A 58 -1 N ASN A 58 O GLU A 63 SHEET 6 AA1 6 TYR A 39 GLY A 48 -1 N GLY A 48 O SER A 51 SHEET 1 AA2 2 ILE A 152 MET A 153 0 SHEET 2 AA2 2 GLU A 180 PHE A 181 -1 O GLU A 180 N MET A 153 SHEET 1 AA3 2 VAL A 162 ASP A 165 0 SHEET 2 AA3 2 LYS A 170 LEU A 173 -1 O LYS A 170 N ASP A 165 SHEET 1 AA4 5 TYR B 39 ARG B 47 0 SHEET 2 AA4 5 SER B 51 ASN B 58 -1 O VAL B 53 N LEU B 45 SHEET 3 AA4 5 LYS B 64 LEU B 70 -1 O ILE B 69 N GLU B 52 SHEET 4 AA4 5 PRO B 109 GLU B 114 -1 O PHE B 113 N VAL B 66 SHEET 5 AA4 5 LEU B 97 LYS B 102 -1 N ALA B 98 O VAL B 112 SHEET 1 AA5 2 ILE B 152 MET B 153 0 SHEET 2 AA5 2 GLU B 180 PHE B 181 -1 O GLU B 180 N MET B 153 SHEET 1 AA6 2 VAL B 162 ASP B 165 0 SHEET 2 AA6 2 LYS B 170 LEU B 173 -1 O ARG B 172 N MET B 163 LINK OE1 GLN A 36 C9 551 A 406 1555 1555 1.19 CISPEP 1 GLU A 230 PRO A 231 0 -4.68 CISPEP 2 GLU B 230 PRO B 231 0 -4.11 SITE 1 AC1 5 LYS A 68 ILE A 174 ASP A 175 HOH A 577 SITE 2 AC1 5 HOH A 624 SITE 1 AC2 3 ARG A 80 ARG A 155 HOH A 655 SITE 1 AC3 4 HIS A 276 SER A 277 LYS A 279 HOH A 511 SITE 1 AC4 2 ARG A 8 ALA A 9 SITE 1 AC5 9 ASN A 118 TYR A 125 MET A 137 PRO A 159 SITE 2 AC5 9 HIS A 160 VAL A 162 ILE A 174 MET A 221 SITE 3 AC5 9 MET A 225 SITE 1 AC6 7 GLN A 36 TYR A 39 ASP A 103 THR A 108 SITE 2 AC6 7 ALA A 110 HOH A 609 HOH A 641 SITE 1 AC7 5 TRP A 24 LEU A 41 VAL A 42 HIS A 183 SITE 2 AC7 5 GLN A 186 SITE 1 AC8 5 ARG A 195 TYR A 196 HIS A 234 GLY A 235 SITE 2 AC8 5 HOH A 510 SITE 1 AC9 4 ARG B 80 ARG B 155 VAL B 192 HOH B 539 SITE 1 AD1 6 LYS B 68 PHE B 113 ILE B 174 ASP B 175 SITE 2 AD1 6 HOH B 525 HOH B 555 SITE 1 AD2 11 LEU B 45 PHE B 121 TYR B 136 MET B 137 SITE 2 AD2 11 ILE B 140 PRO B 159 HIS B 160 VAL B 162 SITE 3 AD2 11 ILE B 174 MET B 221 MET B 225 SITE 1 AD3 6 GLN B 36 TYR B 39 ILE B 69 ASP B 103 SITE 2 AD3 6 THR B 108 ALA B 110 CRYST1 64.684 68.134 334.512 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015460 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014677 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002989 0.00000