HEADER DE NOVO PROTEIN 30-JUL-15 5CY5 TITLE CRYSTAL STRUCTURE OF THE T33-51H DESIGNED SELF-ASSEMBLING PROTEIN TITLE 2 TETRAHEDRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: T33-51H-B; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: T33-51H-A; COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM; SOURCE 3 ORGANISM_TAXID: 2303; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET29B; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 10 ORGANISM_TAXID: 53953; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET29B KEYWDS BIONANOTECHNOLOGY, SYMMETRY, BIOMATERIALS, DE NOVO PROTEIN, KEYWDS 2 TETRAHEDRAL, COMPUTATIONAL DESIGN, ROSETTA, SELF-ASSEMBLY, KEYWDS 3 NANOMATERIAL, SOLUBILITY EXPDTA X-RAY DIFFRACTION AUTHOR K.A.CANNON,D.CASCIO,R.PARK,S.BOYKEN,N.KING,T.O.YEATES REVDAT 3 27-SEP-23 5CY5 1 REMARK REVDAT 2 02-SEP-20 5CY5 1 JRNL REMARK REVDAT 1 10-AUG-16 5CY5 0 JRNL AUTH K.A.CANNON,R.U.PARK,S.E.BOYKEN,U.NATTERMANN,S.YI,D.BAKER, JRNL AUTH 2 N.P.KING,T.O.YEATES JRNL TITL DESIGN AND STRUCTURE OF TWO NEW PROTEIN CAGES ILLUSTRATE JRNL TITL 2 SUCCESSES AND ONGOING CHALLENGES IN PROTEIN ENGINEERING. JRNL REF PROTEIN SCI. V. 29 919 2020 JRNL REFN ESSN 1469-896X JRNL PMID 31840320 JRNL DOI 10.1002/PRO.3802 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 5825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.6134 - 5.3931 0.90 1362 152 0.1499 0.1956 REMARK 3 2 5.3931 - 4.2810 0.90 1304 145 0.1572 0.2021 REMARK 3 3 4.2810 - 3.7399 0.90 1287 143 0.1571 0.1909 REMARK 3 4 3.7399 - 3.4000 0.90 1288 143 0.1784 0.2304 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2281 REMARK 3 ANGLE : 0.995 3069 REMARK 3 CHIRALITY : 0.034 361 REMARK 3 PLANARITY : 0.003 388 REMARK 3 DIHEDRAL : 16.521 871 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 24:166 ) OR ( CHAIN B AND RESID REMARK 3 23:171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.276 -31.569 -0.238 REMARK 3 T TENSOR REMARK 3 T11: 0.4085 T22: 0.6370 REMARK 3 T33: 0.6128 T12: 0.0804 REMARK 3 T13: -0.0451 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: -0.1938 L22: 0.6057 REMARK 3 L33: 7.6424 L12: 0.4041 REMARK 3 L13: -0.6200 L23: 0.0164 REMARK 3 S TENSOR REMARK 3 S11: 0.0420 S12: 0.0467 S13: -0.0169 REMARK 3 S21: -0.1152 S22: -0.1144 S23: 0.0578 REMARK 3 S31: 0.0580 S32: 0.3352 S33: -0.0459 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CY5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212357. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5827 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 75.448 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.35900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1NOG, 1WY1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 8.8 AND 15 % PEG 3350, REMARK 280 EVAPORATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 24-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 24-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 53000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 135130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -266.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 9 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 12 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 THR B 3 REMARK 465 ARG B 4 REMARK 465 ARG B 5 REMARK 465 GLY B 6 REMARK 465 ASP B 7 REMARK 465 GLN B 8 REMARK 465 GLY B 9 REMARK 465 GLU B 10 REMARK 465 THR B 11 REMARK 465 ASP B 12 REMARK 465 LEU B 13 REMARK 465 ALA B 14 REMARK 465 ASN B 15 REMARK 465 ARG B 16 REMARK 465 ALA B 17 REMARK 465 ARG B 18 REMARK 465 VAL B 19 REMARK 465 GLY B 20 REMARK 465 LYS B 21 REMARK 465 ASP B 22 REMARK 465 SER B 172 REMARK 465 ILE B 173 REMARK 465 HIS B 174 REMARK 465 ARG B 175 REMARK 465 VAL B 176 REMARK 465 SER B 177 REMARK 465 LEU B 178 REMARK 465 GLU B 179 REMARK 465 HIS B 180 REMARK 465 HIS B 181 REMARK 465 HIS B 182 REMARK 465 HIS B 183 REMARK 465 HIS B 184 REMARK 465 HIS B 185 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ILE A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 LYS A 6 REMARK 465 VAL A 7 REMARK 465 GLY A 8 REMARK 465 ASP A 9 REMARK 465 LYS A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 THR A 13 REMARK 465 ARG A 14 REMARK 465 LEU A 15 REMARK 465 PHE A 16 REMARK 465 GLY A 17 REMARK 465 GLY A 18 REMARK 465 GLU A 19 REMARK 465 GLU A 20 REMARK 465 VAL A 21 REMARK 465 TRP A 22 REMARK 465 LYS A 23 REMARK 465 VAL A 97A REMARK 465 ASN A 97B REMARK 465 LYS A 97C REMARK 465 LEU A 97D REMARK 465 SER A 97E REMARK 465 PHE A 97F REMARK 465 VAL A 97G REMARK 465 LYS A 167 REMARK 465 GLU A 168 REMARK 465 VAL A 169 REMARK 465 ARG A 170 REMARK 465 SER A 171 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 23 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 122 OG SER B 150 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 24 -74.60 -65.03 REMARK 500 PHE B 103 71.82 67.00 REMARK 500 LYS A 73 15.79 53.95 REMARK 500 PHE A 135 -57.12 -120.27 REMARK 500 REMARK 500 REMARK: NULL DBREF 5CY5 B 1 185 PDB 5CY5 5CY5 1 185 DBREF 5CY5 A 1 171 PDB 5CY5 5CY5 1 171 SEQRES 1 B 185 MET PHE THR ARG ARG GLY ASP GLN GLY GLU THR ASP LEU SEQRES 2 B 185 ALA ASN ARG ALA ARG VAL GLY LYS ASP SER PRO VAL VAL SEQRES 3 B 185 GLU VAL GLN GLY THR ILE ASP GLU LEU ASN SER PHE ILE SEQRES 4 B 185 GLY TYR ALA LEU VAL LEU SER ARG TRP ASP ASP ILE ARG SEQRES 5 B 185 ASN ASP LEU PHE ARG ILE GLN ASN ASP LEU PHE VAL LEU SEQRES 6 B 185 GLY GLU ASP VAL SER THR GLY GLY LYS GLY ARG THR VAL SEQRES 7 B 185 THR MET ASP MET ILE ILE TYR LEU ILE LYS ARG SER VAL SEQRES 8 B 185 GLU MET LYS ALA GLU ILE GLY LYS ILE GLU LEU PHE VAL SEQRES 9 B 185 VAL PRO GLY GLY SER VAL GLU SER ALA SER LEU HIS MET SEQRES 10 B 185 ALA ARG ALA VAL SER ARG ARG LEU GLU ARG ARG ILE LYS SEQRES 11 B 185 ALA ALA SER GLU LEU THR GLU ILE ASN ALA ASN VAL LEU SEQRES 12 B 185 LEU TYR ALA ASN MET LEU SER ASN ILE LEU PHE MET HIS SEQRES 13 B 185 ALA LEU ILE SER ASN LYS ARG LEU ASN ILE PRO GLU LYS SEQRES 14 B 185 ILE TRP SER ILE HIS ARG VAL SER LEU GLU HIS HIS HIS SEQRES 15 B 185 HIS HIS HIS SEQRES 1 A 172 MET ARG ILE THR THR LYS VAL GLY ASP LYS GLY SER THR SEQRES 2 A 172 ARG LEU PHE GLY GLY GLU GLU VAL TRP LYS ASP ASP PRO SEQRES 3 A 172 ILE ILE GLU ALA ASN GLY THR LEU ASP GLU LEU THR SER SEQRES 4 A 172 PHE ILE GLY GLU ALA LYS HIS TYR VAL ASP GLU GLU MET SEQRES 5 A 172 LYS GLY ILE LEU GLU GLU ILE GLN ASN ASP ILE TYR LYS SEQRES 6 A 172 ILE MET GLY GLU ILE GLY SER LYS GLY LYS ILE GLU GLY SEQRES 7 A 172 ILE SER GLU GLU ARG ILE LYS TRP LEU ALA GLY LEU ILE SEQRES 8 A 172 GLU ARG TYR SER GLU MET VAL ASN LYS LEU SER PHE VAL SEQRES 9 A 172 LEU PRO GLY GLY THR LEU GLU SER ALA LYS LEU ASP VAL SEQRES 10 A 172 CYS ARG THR ILE ALA ARG ARG ALA GLU ARG LYS VAL ALA SEQRES 11 A 172 THR VAL LEU ARG GLU PHE GLY ILE GLY THR LEU ALA ALA SEQRES 12 A 172 ILE TYR LEU ALA LEU LEU SER ARG LEU LEU PHE LEU LEU SEQRES 13 A 172 ALA ARG VAL ILE GLU ILE GLU LYS ASN LYS LEU LYS GLU SEQRES 14 A 172 VAL ARG SER HELIX 1 AA1 SER B 23 SER B 46 1 24 HELIX 2 AA2 TRP B 48 THR B 71 1 24 HELIX 3 AA3 THR B 79 GLY B 98 1 20 HELIX 4 AA4 SER B 109 GLU B 134 1 26 HELIX 5 AA5 ASN B 139 LEU B 164 1 26 HELIX 6 AA6 ASP A 25 LYS A 45 1 21 HELIX 7 AA7 ASP A 49 SER A 72 1 24 HELIX 8 AA8 SER A 80 GLU A 96 1 17 HELIX 9 AA9 THR A 108 PHE A 135 1 28 HELIX 10 AB1 GLY A 138 LYS A 165 1 28 SHEET 1 AA1 2 VAL B 104 VAL B 105 0 SHEET 2 AA1 2 LYS B 169 ILE B 170 -1 O LYS B 169 N VAL B 105 CRYST1 106.700 106.700 106.700 90.00 90.00 90.00 P 2 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009372 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009372 0.00000