HEADER MEMBRANE PROTEIN 30-JUL-15 5CYU TITLE STRUCTURE OF THE SOLUBLE DOMAIN OF ECCB1 FROM THE MYCOBACTERIUM TITLE 2 SMEGMATIS ESX-1 SECRETION SYSTEM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED MEMBRANE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 73-479; COMPND 5 SYNONYM: UNCHARACTERIZED PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS (STRAIN ATCC 700084 / SOURCE 3 MC(2)155); SOURCE 4 ORGANISM_TAXID: 246196; SOURCE 5 STRAIN: ATCC 700084 / MC(2)155; SOURCE 6 ATCC: 700084; SOURCE 7 GENE: MSMEG_0060, MSMEI_0061; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PMAPLE4 KEYWDS MEMBRANE PROTEIN, VIRULENCE, PROTEIN SECRETION, MYCOBACTERIA, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, TB KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, TBSGC EXPDTA X-RAY DIFFRACTION AUTHOR M.A.ARBING,S.CHAN,S.KAHNG,J.KIM,D.S.EISENBERG,TB STRUCTURAL GENOMICS AUTHOR 2 CONSORTIUM (TBSGC) REVDAT 7 27-SEP-23 5CYU 1 REMARK REVDAT 6 30-MAR-22 5CYU 1 REMARK REVDAT 5 11-DEC-19 5CYU 1 REMARK REVDAT 4 13-SEP-17 5CYU 1 REMARK REVDAT 3 27-JUL-16 5CYU 1 REMARK REVDAT 2 23-MAR-16 5CYU 1 JRNL REVDAT 1 12-AUG-15 5CYU 0 JRNL AUTH J.M.WAGNER,S.CHAN,T.J.EVANS,S.KAHNG,J.KIM,M.A.ARBING, JRNL AUTH 2 D.EISENBERG,K.V.KOROTKOV JRNL TITL STRUCTURES OF ECCB1 AND ECCD1 FROM THE CORE COMPLEX OF THE JRNL TITL 2 MYCOBACTERIAL ESX-1 TYPE VII SECRETION SYSTEM. JRNL REF BMC STRUCT.BIOL. V. 16 5 2016 JRNL REFN ESSN 1472-6807 JRNL PMID 26922638 JRNL DOI 10.1186/S12900-016-0056-6 REMARK 2 REMARK 2 RESOLUTION. 3.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.1 REMARK 3 NUMBER OF REFLECTIONS : 7954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.120 REMARK 3 FREE R VALUE TEST SET COUNT : 805 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.07 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.43 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.14 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1619 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2711 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1448 REMARK 3 BIN R VALUE (WORKING SET) : 0.2623 REMARK 3 BIN FREE R VALUE : 0.3517 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.56 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 171 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 113.7 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.87840 REMARK 3 B22 (A**2) : -3.87840 REMARK 3 B33 (A**2) : 7.75680 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.860 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.565 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.885 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.863 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5200 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9435 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1401 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 58 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 791 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5200 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 385 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5645 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.93 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.71 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 8.6166 53.8013 140.1910 REMARK 3 T TENSOR REMARK 3 T11: -0.3090 T22: -0.0021 REMARK 3 T33: 0.0701 T12: -0.2187 REMARK 3 T13: -0.1573 T23: 0.1831 REMARK 3 L TENSOR REMARK 3 L11: 1.6909 L22: 1.7304 REMARK 3 L33: 6.6260 L12: 0.4145 REMARK 3 L13: -1.6347 L23: -0.9778 REMARK 3 S TENSOR REMARK 3 S11: 0.3150 S12: -0.0693 S13: -0.1195 REMARK 3 S21: -0.5278 S22: 0.3906 S23: 0.0599 REMARK 3 S31: 0.6715 S32: -0.8692 S33: -0.7056 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8748 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.070 REMARK 200 RESOLUTION RANGE LOW (A) : 64.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 2.22300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KK7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN STORAGE BUFFER: 20 MM TRIS, PH REMARK 280 8.0, 300 MM NACL, 10% GLYCEROL RESERVOIR SOLUTION: 14% PEG 8000, REMARK 280 200 MM NACL, 100 MM PO4-CITRATE PH 4.2 CRYOPROTECTANT: RESERVOIR REMARK 280 SOLUTION WITH 20% PROPYLENE GLYCOL., VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.53333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 187.06667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 140.30000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 233.83333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.76667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.53333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 187.06667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 233.83333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 140.30000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.76667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 72 REMARK 465 SER A 73 REMARK 465 ASP A 74 REMARK 465 GLY A 91 REMARK 465 SER A 92 REMARK 465 ASN A 93 REMARK 465 GLN A 94 REMARK 465 LEU A 95 REMARK 465 LYS A 118 REMARK 465 THR A 274 REMARK 465 GLU A 275 REMARK 465 GLU A 461 REMARK 465 HIS A 462 REMARK 465 ASP A 463 REMARK 465 THR A 464 REMARK 465 LEU A 465 REMARK 465 PRO A 466 REMARK 465 ALA A 467 REMARK 465 ASP A 468 REMARK 465 PRO A 469 REMARK 465 ASN A 470 REMARK 465 PRO A 471 REMARK 465 ARG A 472 REMARK 465 LYS A 473 REMARK 465 VAL A 474 REMARK 465 ALA A 475 REMARK 465 SER A 476 REMARK 465 GLY A 477 REMARK 465 GLU A 478 REMARK 465 GLY A 479 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 75 CG CD OE1 NE2 REMARK 470 LEU A 76 CG CD1 CD2 REMARK 470 VAL A 78 CG1 CG2 REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 96 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 SER A 112 OG REMARK 470 ASN A 113 CG OD1 ND2 REMARK 470 VAL A 115 CG1 CG2 REMARK 470 VAL A 117 CG1 CG2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 LEU A 122 CG CD1 CD2 REMARK 470 ASN A 123 CG OD1 ND2 REMARK 470 ARG A 124 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 125 CB CG1 CG2 CD1 REMARK 470 SER A 126 OG REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 SER A 161 OG REMARK 470 SER A 168 OG REMARK 470 SER A 192 OG REMARK 470 SER A 207 OG REMARK 470 SER A 217 OG REMARK 470 VAL A 223 CG1 CG2 REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 SER A 231 OG REMARK 470 PRO A 255 CG CD REMARK 470 ASN A 256 CG OD1 ND2 REMARK 470 SER A 257 OG REMARK 470 LEU A 260 CG CD1 CD2 REMARK 470 ASN A 263 CG OD1 ND2 REMARK 470 PHE A 270 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 271 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 277 CG OD1 OD2 REMARK 470 ARG A 300 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 307 CG CD1 CD2 REMARK 470 MET A 308 CG SD CE REMARK 470 VAL A 313 CG1 CG2 REMARK 470 SER A 316 OG REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 LEU A 339 CG CD1 CD2 REMARK 470 GLN A 341 CG CD OE1 NE2 REMARK 470 ILE A 383 CG1 CG2 CD1 REMARK 470 ASP A 386 CG OD1 OD2 REMARK 470 ARG A 405 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 418 CG1 CG2 REMARK 470 ASP A 426 CG OD1 OD2 REMARK 470 LYS A 429 CG CD CE NZ REMARK 470 LYS A 455 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H CYS A 347 O ILE A 364 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 140 67.90 -115.92 REMARK 500 ILE A 171 63.79 -107.18 REMARK 500 TRP A 244 74.39 -101.73 REMARK 500 ALA A 251 49.32 -97.89 REMARK 500 ASN A 303 -53.10 -131.23 REMARK 500 SER A 304 -58.90 67.10 REMARK 500 GLN A 309 144.98 69.73 REMARK 500 ASP A 332 -74.64 -74.48 REMARK 500 SER A 343 78.24 -111.42 REMARK 500 TYR A 390 75.37 -113.68 REMARK 500 REMARK 500 REMARK: NULL DBREF 5CYU A 73 479 UNP A0QNJ0 A0QNJ0_MYCS2 73 479 SEQADV 5CYU SER A 72 UNP A0QNJ0 EXPRESSION TAG SEQRES 1 A 408 SER SER ASP GLN LEU LEU VAL ASP ARG THR THR ASN GLN SEQRES 2 A 408 LEU TYR VAL MET LEU PRO GLY SER ASN GLN LEU ARG PRO SEQRES 3 A 408 VAL TYR ASN LEU THR SER ALA ARG LEU VAL LEU GLY ASN SEQRES 4 A 408 ALA SER ASN PRO VAL ALA VAL LYS SER GLU GLU LEU ASN SEQRES 5 A 408 ARG ILE SER LYS GLY GLN SER ILE GLY ILE PRO GLY ALA SEQRES 6 A 408 PRO TYR ALA THR PRO THR GLY THR PRO ALA SER GLN TRP SEQRES 7 A 408 THR LEU CYS ASP THR VAL ALA LYS PRO ASP SER SER ALA SEQRES 8 A 408 PRO LYS VAL GLU THR SER ILE LEU ILE ARG THR LEU ALA SEQRES 9 A 408 ILE ASP SER GLY VAL GLY PRO ILE ARG ALA ASP GLN GLY SEQRES 10 A 408 MET LEU VAL SER TYR GLU GLY ALA ASN TRP LEU ILE THR SEQRES 11 A 408 GLU GLY GLY ARG HIS SER ILE ASP LEU ALA ASP ARG ALA SEQRES 12 A 408 VAL THR SER ALA VAL GLY ILE PRO VAL THR ALA LYS PRO SEQRES 13 A 408 THR PRO ILE SER GLN GLY LEU PHE ASN ALA LEU PRO ASN SEQRES 14 A 408 ARG GLY PRO TRP GLN LEU PRO GLN ILE PRO ALA ALA GLY SEQRES 15 A 408 ALA PRO ASN SER VAL GLY LEU PRO GLU ASN LEU VAL ILE SEQRES 16 A 408 GLY SER VAL PHE ARG THR ALA THR GLU SER ASP PRO GLN SEQRES 17 A 408 HIS TYR VAL VAL LEU PRO ASP GLY VAL ALA ARG VAL ASN SEQRES 18 A 408 ASN THR THR ALA ALA ALA LEU ARG ALA THR ASN SER TYR SEQRES 19 A 408 GLY LEU MET GLN PRO PRO ALA VAL GLU ALA SER VAL VAL SEQRES 20 A 408 ALA LYS ILE PRO GLU GLN VAL TYR VAL SER PRO LEU PRO SEQRES 21 A 408 ASP GLN PRO LEU ASP VAL LEU LEU ARG GLN ASP SER PRO SEQRES 22 A 408 VAL LEU CYS TRP SER TRP GLN ARG GLU PRO GLY ASP GLN SEQRES 23 A 408 ALA PRO LYS THR THR VAL ILE ALA GLY ARG ARG LEU PRO SEQRES 24 A 408 LEU PRO ALA ASN ALA ILE GLY THR GLY ILE ASP GLN ILE SEQRES 25 A 408 GLY GLY ASP SER THR VAL TYR ILE GLU GLY GLY GLN PHE SEQRES 26 A 408 VAL ARG LEU GLN SER PRO ASP PRO ARG VAL GLY GLU SER SEQRES 27 A 408 MET TYR TYR ILE ASP PRO GLN GLY VAL ARG TYR GLY ILE SEQRES 28 A 408 ALA ASN ASP ASP ALA ALA LYS ASN LEU GLY LEU ALA GLY SEQRES 29 A 408 PRO VAL ASN ALA PRO TRP GLN VAL VAL GLY LEU LEU VAL SEQRES 30 A 408 ASP GLY PRO VAL LEU SER LYS GLU ALA ALA LEU ILE GLU SEQRES 31 A 408 HIS ASP THR LEU PRO ALA ASP PRO ASN PRO ARG LYS VAL SEQRES 32 A 408 ALA SER GLY GLU GLY FORMUL 2 HOH *10(H2 O) HELIX 1 AA1 ASN A 100 LEU A 108 1 9 HELIX 2 AA2 GLU A 120 ARG A 124 1 5 HELIX 3 AA3 ASP A 212 GLY A 220 1 9 HELIX 4 AA4 SER A 231 LEU A 238 1 8 HELIX 5 AA5 ASN A 292 ASN A 303 1 12 HELIX 6 AA6 SER A 316 ILE A 321 1 6 HELIX 7 AA7 PRO A 372 ILE A 376 5 5 HELIX 8 AA8 ASN A 424 LEU A 431 1 8 HELIX 9 AA9 PRO A 440 GLY A 445 1 6 SHEET 1 AA1 3 LEU A 76 VAL A 78 0 SHEET 2 AA1 3 LEU A 85 VAL A 87 -1 O TYR A 86 N LEU A 77 SHEET 3 AA1 3 PRO A 97 VAL A 98 -1 O VAL A 98 N LEU A 85 SHEET 1 AA2 7 VAL A 180 PRO A 182 0 SHEET 2 AA2 7 LYS A 360 GLY A 366 -1 O ALA A 365 N GLY A 181 SHEET 3 AA2 7 VAL A 345 GLN A 351 -1 N CYS A 347 O ILE A 364 SHEET 4 AA2 7 GLN A 148 THR A 154 -1 N TRP A 149 O TRP A 350 SHEET 5 AA2 7 GLU A 166 ILE A 171 -1 O SER A 168 N CYS A 152 SHEET 6 AA2 7 SER A 387 ILE A 391 1 O THR A 388 N THR A 167 SHEET 7 AA2 7 ILE A 380 ASP A 381 -1 N ILE A 380 O VAL A 389 SHEET 1 AA3 4 GLY A 204 SER A 207 0 SHEET 2 AA3 4 ASN A 197 THR A 201 -1 N LEU A 199 O HIS A 206 SHEET 3 AA3 4 GLN A 187 SER A 192 -1 N VAL A 191 O TRP A 198 SHEET 4 AA3 4 THR A 228 PRO A 229 1 O THR A 228 N SER A 192 SHEET 1 AA4 4 GLY A 204 SER A 207 0 SHEET 2 AA4 4 ASN A 197 THR A 201 -1 N LEU A 199 O HIS A 206 SHEET 3 AA4 4 GLN A 187 SER A 192 -1 N VAL A 191 O TRP A 198 SHEET 4 AA4 4 ASP A 336 LEU A 338 1 O LEU A 338 N GLY A 188 SHEET 1 AA5 4 GLY A 287 VAL A 291 0 SHEET 2 AA5 4 HIS A 280 LEU A 284 -1 N VAL A 282 O ALA A 289 SHEET 3 AA5 4 VAL A 269 THR A 272 -1 N PHE A 270 O TYR A 281 SHEET 4 AA5 4 ALA A 312 VAL A 313 1 O VAL A 313 N ARG A 271 SHEET 1 AA6 5 VAL A 437 ASN A 438 0 SHEET 2 AA6 5 GLN A 395 GLN A 400 1 N ARG A 398 O VAL A 437 SHEET 3 AA6 5 GLU A 408 ILE A 413 -1 O ILE A 413 N GLN A 395 SHEET 4 AA6 5 VAL A 418 ILE A 422 -1 O TYR A 420 N TYR A 412 SHEET 5 AA6 5 VAL A 448 LEU A 453 1 O GLY A 450 N ARG A 419 SSBOND 1 CYS A 152 CYS A 347 1555 1555 2.06 CRYST1 74.410 74.410 280.600 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013439 0.007759 0.000000 0.00000 SCALE2 0.000000 0.015518 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003564 0.00000