HEADER VIRAL PROTEIN 30-JUL-15 5CYW TITLE CRYSTAL STRUCTURE OF VACCINIA VIRUS C7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON ANTAGONIST C7; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: C7L, HOST RANGE PROTEIN 2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS (STRAIN ANKARA); SOURCE 3 ORGANISM_COMMON: VACV; SOURCE 4 ORGANISM_TAXID: 126794; SOURCE 5 STRAIN: ANKARA; SOURCE 6 GENE: MVA018L, ACAM3000_MVA_018, C7L; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS HOST-RANGE, BETA-SANDWICH, POXVIRUS, VACCINIA, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.E.KRUMM,X.MENG,Y.LI,Y.XIANG,J.DENG REVDAT 6 06-MAR-24 5CYW 1 REMARK REVDAT 5 11-DEC-19 5CYW 1 REMARK REVDAT 4 13-SEP-17 5CYW 1 JRNL REMARK REVDAT 3 16-DEC-15 5CYW 1 JRNL REVDAT 2 02-DEC-15 5CYW 1 JRNL REVDAT 1 18-NOV-15 5CYW 0 JRNL AUTH X.MENG,B.KRUMM,Y.LI,J.DENG,Y.XIANG JRNL TITL STRUCTURAL BASIS FOR ANTAGONIZING A HOST RESTRICTION FACTOR JRNL TITL 2 BY C7 FAMILY OF POXVIRUS HOST-RANGE PROTEINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 14858 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26578811 JRNL DOI 10.1073/PNAS.1515354112 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 22941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0248 - 3.9990 1.00 2860 173 0.1451 0.1735 REMARK 3 2 3.9990 - 3.1744 1.00 2778 147 0.1332 0.1437 REMARK 3 3 3.1744 - 2.7732 1.00 2758 155 0.1646 0.2079 REMARK 3 4 2.7732 - 2.5196 1.00 2749 138 0.1579 0.1841 REMARK 3 5 2.5196 - 2.3391 1.00 2739 134 0.1636 0.2150 REMARK 3 6 2.3391 - 2.2012 1.00 2736 146 0.1565 0.1953 REMARK 3 7 2.2012 - 2.0909 1.00 2716 152 0.1814 0.2289 REMARK 3 8 2.0909 - 1.9999 0.89 2437 123 0.2297 0.2614 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 1310 REMARK 3 ANGLE : 1.656 1766 REMARK 3 CHIRALITY : 0.110 184 REMARK 3 PLANARITY : 0.009 221 REMARK 3 DIHEDRAL : 15.014 494 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 3:22) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6079 -23.7597 -5.6159 REMARK 3 T TENSOR REMARK 3 T11: 0.2480 T22: 0.2511 REMARK 3 T33: 0.2490 T12: 0.0428 REMARK 3 T13: 0.0067 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 7.3649 L22: 4.4784 REMARK 3 L33: 3.6316 L12: 1.2837 REMARK 3 L13: 0.9122 L23: 0.7890 REMARK 3 S TENSOR REMARK 3 S11: -0.2077 S12: 0.0963 S13: -0.3119 REMARK 3 S21: 0.2710 S22: 0.1912 S23: -0.3877 REMARK 3 S31: 0.2156 S32: 0.2076 S33: -0.0399 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 23:38) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6616 -18.8721 0.7796 REMARK 3 T TENSOR REMARK 3 T11: 0.3194 T22: 0.3136 REMARK 3 T33: 0.2953 T12: 0.0197 REMARK 3 T13: -0.0000 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 4.2565 L22: 8.8172 REMARK 3 L33: 4.4605 L12: 3.2412 REMARK 3 L13: 2.1236 L23: 3.9076 REMARK 3 S TENSOR REMARK 3 S11: -0.1586 S12: -0.2422 S13: -0.0219 REMARK 3 S21: 0.4013 S22: -0.0304 S23: -0.2329 REMARK 3 S31: 0.0250 S32: 0.0780 S33: 0.1487 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 39:56) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0754 -20.6934 -10.4305 REMARK 3 T TENSOR REMARK 3 T11: 0.1889 T22: 0.2729 REMARK 3 T33: 0.2191 T12: 0.0333 REMARK 3 T13: 0.0101 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.7914 L22: 9.1217 REMARK 3 L33: 3.3933 L12: 0.7757 REMARK 3 L13: -0.2638 L23: 1.4380 REMARK 3 S TENSOR REMARK 3 S11: -0.0497 S12: 0.0724 S13: -0.0970 REMARK 3 S21: -0.1385 S22: -0.0394 S23: -0.2442 REMARK 3 S31: 0.1853 S32: -0.0148 S33: 0.0112 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 57:72) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9380 -13.7357 -6.2555 REMARK 3 T TENSOR REMARK 3 T11: 0.1941 T22: 0.2642 REMARK 3 T33: 0.2123 T12: 0.0104 REMARK 3 T13: 0.0118 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.7210 L22: 6.5258 REMARK 3 L33: 2.3418 L12: -2.6105 REMARK 3 L13: -1.9551 L23: 2.3552 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: 0.1577 S13: -0.0529 REMARK 3 S21: 0.0103 S22: -0.1499 S23: 0.5267 REMARK 3 S31: -0.0041 S32: -0.1822 S33: 0.1664 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 73:100) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1156 -14.5052 -8.2786 REMARK 3 T TENSOR REMARK 3 T11: 0.1876 T22: 0.2614 REMARK 3 T33: 0.2370 T12: 0.0221 REMARK 3 T13: -0.0034 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.8156 L22: 4.6849 REMARK 3 L33: 1.8707 L12: -0.5782 REMARK 3 L13: -0.4792 L23: 1.1459 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: 0.1092 S13: -0.0428 REMARK 3 S21: 0.0281 S22: 0.0153 S23: -0.1618 REMARK 3 S31: 0.0094 S32: 0.1173 S33: 0.0207 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 101:110) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2056 -24.3608 2.5292 REMARK 3 T TENSOR REMARK 3 T11: 0.4760 T22: 0.4983 REMARK 3 T33: 0.5447 T12: -0.0053 REMARK 3 T13: 0.1275 T23: 0.0606 REMARK 3 L TENSOR REMARK 3 L11: 2.5027 L22: 1.2061 REMARK 3 L33: 8.3554 L12: 1.0734 REMARK 3 L13: -1.7099 L23: -0.3390 REMARK 3 S TENSOR REMARK 3 S11: 0.0608 S12: -0.4746 S13: -0.0909 REMARK 3 S21: 0.4123 S22: 0.1680 S23: 1.2695 REMARK 3 S31: 0.4192 S32: -1.4436 S33: -0.0686 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 111:129) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1822 -18.2202 6.0100 REMARK 3 T TENSOR REMARK 3 T11: 0.4090 T22: 0.3670 REMARK 3 T33: 0.2905 T12: 0.0826 REMARK 3 T13: -0.0464 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 8.0540 L22: 4.3256 REMARK 3 L33: 2.6863 L12: 3.4078 REMARK 3 L13: 2.7032 L23: 2.0777 REMARK 3 S TENSOR REMARK 3 S11: -0.1860 S12: -0.6043 S13: -0.0810 REMARK 3 S21: 0.6473 S22: 0.1029 S23: -0.2670 REMARK 3 S31: 0.2431 S32: 0.2103 S33: 0.0034 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 130:149) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3821 -23.2234 -6.1593 REMARK 3 T TENSOR REMARK 3 T11: 0.2813 T22: 0.2859 REMARK 3 T33: 0.3482 T12: 0.0616 REMARK 3 T13: 0.0028 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 6.1324 L22: 1.7238 REMARK 3 L33: 3.8086 L12: -0.0997 REMARK 3 L13: 0.2938 L23: 0.8309 REMARK 3 S TENSOR REMARK 3 S11: -0.1184 S12: 0.3579 S13: 0.1009 REMARK 3 S21: 0.0200 S22: 0.0894 S23: -0.3197 REMARK 3 S31: -0.1131 S32: 0.5049 S33: -0.0902 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212289. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97948 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22967 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 19.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 50.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.54500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5, 3.5 M SODIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 50.32650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.32650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.32650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.32650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.32650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.32650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 50.32650 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 50.32650 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 50.32650 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 50.32650 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 50.32650 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 50.32650 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 50.32650 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 50.32650 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 50.32650 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 50.32650 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 50.32650 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 50.32650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -50.32650 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 -50.32650 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 50.32650 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 -50.32650 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 ASP B 150 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET B 1 CB CG SD CE REMARK 480 LYS B 24 CE NZ REMARK 480 LYS B 40 CB CG CD CE NZ REMARK 480 LYS B 43 CD CE NZ REMARK 480 LYS B 94 CE NZ REMARK 480 GLU B 106 CG CD OE1 OE2 REMARK 480 LYS B 109 CE NZ REMARK 480 LYS B 122 NZ REMARK 480 LYS B 123 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 130 -128.10 43.01 REMARK 500 TYR B 131 48.98 -96.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 459 DISTANCE = 8.56 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CZ3 RELATED DB: PDB DBREF 5CYW B 1 150 UNP P68598 C7_VACCA 1 150 SEQADV 5CYW GLY B -1 UNP P68598 EXPRESSION TAG SEQADV 5CYW HIS B 0 UNP P68598 EXPRESSION TAG SEQRES 1 B 152 GLY HIS MET GLY ILE GLN HIS GLU PHE ASP ILE ILE ILE SEQRES 2 B 152 ASN GLY ASP ILE ALA LEU ARG ASN LEU GLN LEU HIS LYS SEQRES 3 B 152 GLY ASP ASN TYR GLY CYS LYS LEU LYS ILE ILE SER ASN SEQRES 4 B 152 ASP TYR LYS LYS LEU LYS PHE ARG PHE ILE ILE ARG PRO SEQRES 5 B 152 ASP TRP SER GLU ILE ASP GLU VAL LYS GLY LEU THR VAL SEQRES 6 B 152 PHE ALA ASN ASN TYR ALA VAL LYS VAL ASN LYS VAL ASP SEQRES 7 B 152 ASP THR PHE TYR TYR VAL ILE TYR GLU ALA VAL ILE HIS SEQRES 8 B 152 LEU TYR ASN LYS LYS THR GLU ILE LEU ILE TYR SER ASP SEQRES 9 B 152 ASP GLU ASN GLU LEU PHE LYS HIS TYR TYR PRO TYR ILE SEQRES 10 B 152 SER LEU ASN MET ILE SER LYS LYS TYR LYS VAL LYS GLU SEQRES 11 B 152 GLU ASN TYR SER SER PRO TYR ILE GLU HIS PRO LEU ILE SEQRES 12 B 152 PRO TYR ARG ASP TYR GLU SER MET ASP HET GOL B 201 6 HET GOL B 202 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 HOH *159(H2 O) HELIX 1 AA1 GLU B 106 TYR B 111 1 6 HELIX 2 AA2 ARG B 144 SER B 148 5 5 SHEET 1 AA1 6 ASN B 73 ASP B 77 0 SHEET 2 AA1 6 VAL B 82 HIS B 89 -1 O ILE B 83 N VAL B 75 SHEET 3 AA1 6 LYS B 41 ARG B 49 -1 N PHE B 46 O TYR B 84 SHEET 4 AA1 6 GLU B 6 ILE B 11 -1 N ILE B 10 O ARG B 45 SHEET 5 AA1 6 ILE B 15 ARG B 18 -1 O LEU B 17 N ILE B 9 SHEET 6 AA1 6 TYR B 135 GLU B 137 -1 O GLU B 137 N ALA B 16 SHEET 1 AA2 6 TYR B 68 ALA B 69 0 SHEET 2 AA2 6 THR B 62 ALA B 65 -1 N ALA B 65 O TYR B 68 SHEET 3 AA2 6 LYS B 94 TYR B 100 -1 O TYR B 100 N THR B 62 SHEET 4 AA2 6 GLY B 29 ILE B 35 -1 N LEU B 32 O ILE B 97 SHEET 5 AA2 6 TYR B 114 ASN B 118 1 O LEU B 117 N LYS B 33 SHEET 6 AA2 6 LYS B 123 GLU B 128 -1 O LYS B 125 N SER B 116 CISPEP 1 HIS B 138 PRO B 139 0 -3.10 SITE 1 AC1 7 SER B 36 ASN B 37 TYR B 39 LEU B 90 SITE 2 AC1 7 TYR B 91 ASN B 92 LYS B 93 SITE 1 AC2 3 TYR B 80 TYR B 143 HOH B 353 CRYST1 100.653 100.653 100.653 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009935 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009935 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009935 0.00000